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Construction of Gene network for panicle development based on trait and expression QTL anaylisis.

Research Project

Project/Area Number 23248002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionNagoya University

Principal Investigator

MATSUOKA Makoto  名古屋大学, 生物機能開発利用研究センター, 教授 (00270992)

Co-Investigator(Renkei-kenkyūsha) AYA Kouichirou  名古屋大学, 高等研究院 (10594054)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥51,090,000 (Direct Cost: ¥39,300,000、Indirect Cost: ¥11,790,000)
Fiscal Year 2013: ¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2012: ¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2011: ¥21,970,000 (Direct Cost: ¥16,900,000、Indirect Cost: ¥5,070,000)
Keywords育種学 / 遺伝学 / 遺伝子 / 植物
Research Abstract

We investigated the molecular mechanism of rice panicle development by using 83 BILs crossed between an indica variety, Habataki, and Japonica, Koshihikari. For QTL analysis, we evaluated 34 traits, such as panicle number per panicle, the length of panicle, , etc (traitQTL). We also analyzed the expression level of all rice genes by microarray analysis for performing expression QTL analysis (eQTL). By the results of trait QTL, we identified 83 QTLs involved in determining the panicle structure. Farther, we suggested a validity of comparative analyses between trait-QTL and eQTL data for prediction of candidate genes of QTL. We first focused on OsCKX2/Gn1a, which is involved in increasing the secondary rachis number per panicle and already isolated by a positional cloning previously, and succeeded to predict the most feasible candidate of the Gn1a locus. Using the same method, we succeeded to predict several candidates for qPBL-6, qPBL-7 and pUPB-8.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (27 results)

All 2014 2013 2012 2011

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 1 results) Presentation (14 results) (of which Invited: 3 results)

  • [Journal Article] A Novel AP2-type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway2014

    • Author(s)
      Aya, K., Hobo, T., Sato-Izawa, K., Ueguchi-Tanaka, M., Kitano, H., Matsuoka,M.
    • Journal Title

      Plantand Cell Physiology

      Volume: (accepted)

    • NAID

      40020302118

    • URL

      http://pcp.oxfordjournals.org/content/early/2014/03/03/pcp.pcu023.full.pdf+html

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Expression and purification of a GRAS domain of SLR1, the rice DELLAprotein2014

    • Author(s)
      Sato, T., Miyanoiri, Y., Takeda, M., Naoe, Y., Mitani, R., Hirano, K., Takehara, S., Kainosho, M., Matsuoka, M., Ueguchi-Tanaka, M., Kato, H.
    • Journal Title

      Protein Expr. Purif.

      Volume: N/A Pages: 248-254

    • DOI

      10.1016/j.pep.2014.01.006

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Novel AP2-type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.2014

    • Author(s)
      Aya, K
    • Journal Title

      Plant and Cell Physiology

      Volume: N/A

    • NAID

      40020302118

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Survey of genes involved in rice secondary cell wall formation through a co-expression network.2013

    • Author(s)
      Hirano K
    • Journal Title

      Plant Cell Physiology

      Volume: 54 Issue: 11 Pages: 1803-1821

    • DOI

      10.1093/pcp/pct121

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of transcription factors involved in rice secondary cell wall formation.2013

    • Author(s)
      Hirano K
    • Journal Title

      Plant Cell Physiology

      Volume: 54 Issue: 11 Pages: 1791-1802

    • DOI

      10.1093/pcp/pct122

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genes offering the potential for designing yield-related traits in rice2013

    • Author(s)
      Ikeda, M., Miura, K., Aya, K., Kitano, H., Matsuoka, M.
    • Journal Title

      Cur. Opin. in Plant Biology

      Volume: 16, (2) Issue: 2 Pages: 213-220

    • DOI

      10.1016/j.pbi.2013.02.002

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation2012

    • Author(s)
      Inukai, Y., Sakamoto, T., Morinaka, Y., Miwa, M., Kojima, M., Tanimoto, E., Yamamoto, H.,Sato, K., Katayama, Y., Matsuoka,M., Kitano,H.
    • Journal Title

      J. Plant GrowthReg.

      Volume: 31, (3) Issue: 3 Pages: 373-381

    • DOI

      10.1007/s00344-011-9247-3

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice2012

    • Author(s)
      Abe, A., Takagi, H., Fujibe, T., Aya, K., Kojima, M., Sakakibara, H., Uemura, A., Matsuoka, M., Terauchi, R.
    • Journal Title

      Theor. Appl. Genet.

      Volume: 125, (4) Issue: 4 Pages: 647-657

    • DOI

      10.1007/s00122-012-1857-z

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficacy of microarray profiling data combined with QTL mapping for the identification of a QTL gene controlling the initial growth rate in rice2012

    • Author(s)
      Yano, K., Takashi, T., Nagamatsu, S., Kojima, M., Sakakibara, H., Kitano, H., Matsuoka, M., Aya, K.
    • Journal Title

      Plant Cell Physiol.

      Volume: 53, (4) Issue: 4 Pages: 729-739

    • DOI

      10.1093/pcp/pcs027

    • NAID

      10030653614

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ROOT GROWTH INHIBITING, a Rice Endo-1,4-β-d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation.2012

    • Author(s)
      Inukai Y
    • Journal Title

      Journal of Plant Growth Regulation.

      Volume: 31 Pages: 373-381

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of QTLs in the breeding of high-yielding rice2011

    • Author(s)
      Miura K, Ashikari M, Matsuoka M.
    • Journal Title

      Trends Plant Sci.

      Volume: 16, (6) Issue: 6 Pages: 319-326

    • DOI

      10.1016/j.tplants.2011.02.009

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Artificial selection for a green revolution gene during japonica rice domestication2011

    • Author(s)
      Asano, K., Yamasaki, M., Taku, S., Miur,a K., Katagir,i S., Ito, T., Do, K., Wu, J., Ebana, K., Matsumoto, T., Innan, H., Kitano, H., Ashikari, M., Matsuoka, M.
    • Journal Title

      Proc. Natl .Acad. Sci. U S A

      Volume: 108, (27) Issue: 27 Pages: 11034-11039

    • DOI

      10.1073/pnas.1019490108

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm2011

    • Author(s)
      Hirano, K., Aya, K., Kondo, M., Okuno, A., Morinaka, Y., Matsuoka, M.
    • Journal Title

      Plant Cell Rep.

      Volume: 31,(1) Issue: 1 Pages: 91-101

    • DOI

      10.1007/s00299-011-1142-7

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Is there alternative receptor(s) for gibberellin in ricealeurone cells?2014

    • Author(s)
      矢野憲司
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山
    • Year and Date
      2014-03-18
    • Related Report
      2013 Final Research Report
  • [Presentation] Is there alternative receptor(s) for gibberellin in rice aleurone cells?2014

    • Author(s)
      矢野憲司
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山県
    • Related Report
      2013 Annual Research Report
  • [Presentation] Gibberellin signaling via the GID1-DELLA perception system and its modification during the course of plant evolution2013

    • Author(s)
      Matsuoka, M.
    • Organizer
      International Conference on Plant GrowthSubstances 2013
    • Place of Presentation
      上海,China
    • Year and Date
      2013-06-18
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 超多粒系統,NP-6における1穂穎花数増加に関与するQTLの集積がシンクおよびソース器官に与える影響2013

    • Author(s)
      池田真由子
    • Organizer
      日本育種学会第123回講演会
    • Place of Presentation
      東京
    • Year and Date
      2013-03-28
    • Related Report
      2013 Final Research Report
  • [Presentation] Gibberellin signaling via the GID1-DELLA perception system and its modification during the course of plant evolution. The 21st Conference of the International Plant Growth Substances Association2013

    • Author(s)
      松岡信
    • Organizer
      IPGSA2013
    • Place of Presentation
      上海
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 超多粒系統,NP-6 における1 穂穎花数増加に関与するQTL の集積がシンクおよびソース器官に与える影響2013

    • Author(s)
      池田真由子
    • Organizer
      日本育種学会第123回講演会
    • Place of Presentation
      東京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] 多収イネ、ハバタキの穂の着粒構造形成に関わるGn1およびQTLの集積系統が茎葉および収量関連形質に与える影響2012

    • Author(s)
      池田真由子
    • Organizer
      第20回育種学会中部地区談話会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-12-08
    • Related Report
      2013 Final Research Report
  • [Presentation] マイクロアレイとQTLマッピングを組み合わせたイネの初期成長性に関するQTLの同定2012

    • Author(s)
      矢野憲司
    • Organizer
      日本育種学会第121回講演会
    • Place of Presentation
      宇都宮
    • Year and Date
      2012-03-29
    • Related Report
      2013 Final Research Report
  • [Presentation] マイクロアレイとQTLマッピングを組み合わせたイネの初期成長性に関するQTLの同定2012

    • Author(s)
      矢野憲司
    • Organizer
      日本育種学会第121回講演会
    • Place of Presentation
      宇都宮大学(茨城県)
    • Year and Date
      2012-03-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] 多収イネ、ハバタキの穂の着粒構造形成に関わるGn1 およびQTLの集積系統が茎葉および収量関連形質に与える影響2012

    • Author(s)
      池田真由子
    • Organizer
      第20回育種学会中部地区談話会
    • Place of Presentation
      愛知県
    • Related Report
      2012 Annual Research Report
  • [Presentation] 長穂性イネ系統を用いた穂形質に関するQTL解析2011

    • Author(s)
      安藤考紀
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井
    • Year and Date
      2011-09-24
    • Related Report
      2013 Final Research Report
  • [Presentation] 長穂性イネ系統を用いた穂形質に関するQTL解析2011

    • Author(s)
      安藤考紀
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井県立大学(福井県)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] New approach for enhancing the lodging resistance-beyond the sd1 mutation-2011

    • Author(s)
      Matsuoka M
    • Organizer
      2th GCCI 2011
    • Place of Presentation
      華中農業大学(Wuhan, CHINA)(招待講演)
    • Year and Date
      2011-07-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] New approach for enhancing the lodging resistance-beyond the sd1 mutation-2011

    • Author(s)
      Matsuoka, M.
    • Organizer
      The Second International Symposium on Genomics and Corp Genetic Improvement, 2th GCCI 2011
    • Place of Presentation
      Wuhan, CHINA
    • Related Report
      2013 Final Research Report
    • Invited

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Published: 2011-04-06   Modified: 2019-07-29  

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