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Targeting of the nuclease-resistant functional oligonucleotides

Research Project

Project/Area Number 23249008
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionHokkaido University

Principal Investigator

MATSUDA Akira  北海道大学, 薬学研究科(研究院), その他 (90157313)

Co-Investigator(Renkei-kenkyūsha) SATO Kosuke  北海道大学, 大学院薬学研究院, 助教 (70415686)
SATO Yusuke  北海道大学, 大学院薬学研究院, 特任助教 (10735624)
Project Period (FY) 2011-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥47,840,000 (Direct Cost: ¥36,800,000、Indirect Cost: ¥11,040,000)
Fiscal Year 2014: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2013: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2012: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Fiscal Year 2011: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Keywords核酸医薬 / 組織標的化 / PSMA / オリゴヌクレオチド / ヌクレアーゼ抵抗性 / SPAAC / DNMT1 / stat3 / 核酸創薬 / 2'-OMe-4'-チオリポヌクレオシド / アンチマイクロRNA / shRNA / ホスホロチオエート結合 / ホスホジエステル結合
Outline of Final Research Achievements

(1) MicroRNA (miR)-122 is highly expressed in liver and controls cholesterol metabolism. We prepared antisense molecules (AMO) against miR-122 using nuclease resistant 2’-OMe-4’-thioribonucleosides. YSK05-liposome was prepared with the pH-sensitive cationic lipid, and the AMO was encapsulated. Systemic administration of the liposome induced knockdown of miR-122 and increase in target genes in the liver, and a subsequent reduction in plasma cholesterol at a dose of 1mg AMO/kg with persisting for over 2 weeks. (2) Prostate-specific membrane antigen (PSMA) ligand (GL) was attached to a dumbbell-type of the cyclic oligonucleotide (fCpG-dmDNA), which contained 5-formylCpG, giving GL-fCpG-dmDNA. fCpG-dmDNA inhibited the methylation of CpG-oligonucleotides. fCpG-dmDNA showed cytotoxicity against HeLa cells (PSMA-negative) with an IC50 value of 41 nM. On the other hand, GL-fCpG-dmDNA showed cytotoxicity against only PSMA-positive cell line such as LNCaP prostate tumor cells.

Report

(5 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (30 results)

All 2015 2014 2013 2012 2011 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (10 results) (of which Invited: 8 results) Book (4 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Transcription of 4’-thioDNA templates to natural RNA in vitro and in mammalian cells.2015

    • Author(s)
      Maruyama, H.; Furukawa, K.; Kamiya, H.; Minakawa, N.; Matsuda, A.
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 37 Pages: 7887-7890

    • DOI

      10.1039/c4cc08862j

    • NAID

      120005714777

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The systemic administration of an anti-miRNA oligonucleotide encapsulaed pH-sensitive liposome results in reduced level of hepatic microRNA-122 in mice2014

    • Author(s)
      Hiroto Hatakeyama, Manami Murata, Yusuke Sato, Mayumi Takahashi, Noriyuki Minakawa, Akira Matsuda, Hideyoshi Harashima
    • Journal Title

      J. Control. Release

      Volume: 173 Pages: 43-50

    • DOI

      10.1016/j.jconrel.2013.10.023

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An intracellular buildup reaction of active siRNA species from short RNA fragments.2014

    • Author(s)
      Maruyama, H.; Nakashima, Y.; Shuto, S.; Matsuda, A.; Itoh, Y.; Abe, H.
    • Journal Title

      Chem. Commun.

      Volume: 50 Issue: 11 Pages: 1284-1287

    • DOI

      10.1039/c3cc47529h

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] First synthesis of fully modified 4'-selenoRNA and 2'-OMe-4'-selenoRNA based on the mechanistic considerations of an unexpected strand break.2014

    • Author(s)
      Tarashima, N.; Hayashi, K.; Terasaki, M.; Tanike, H.; Inagaki, Y.; Fukuda, Y.; Furukawa, K.; Matsuda, A.; Minakawa,
    • Journal Title

      Org. Lett.

      Volume: 16 Issue: 18 Pages: 4710-4713

    • DOI

      10.1021/ol502077h

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chemistry, Properties, and in Vitro and in Vivo Applications of 2'-O-Methoxyethyl-4'-thioRNA, a Novel Hybrid Type of Chemically Modified RNA2014

    • Author(s)
      Saito, Y.; Hashimoto, Y.; Arai, M.; Tarashima, N.; Miyazawa, T.; Miki, K.; Takahashi, M.; Furukawa, K.; Yamazaki, N.; Matsuda, A.; Ishida,T.; Minakawa, N.
    • Journal Title

      ChemBioChem

      Volume: 15 Issue: 17 Pages: 2535-2540

    • DOI

      10.1002/cbic.201402398

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Selective transcription of an unnatural naphthyridine:imidazopyrimidine base pair containing four hydrogen bonds by using T7 RNA polymerase.2014

    • Author(s)
      Nomura, Y.; Kashiwagi, S.; Sato, K.; Matsuda, A.
    • Journal Title

      Angew. Chem. Int. Ed. Engl.

      Volume: 53 Issue: 47 Pages: 12844-12848

    • DOI

      10.1002/anie.201406402

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] PCR Amplification of 4'-ThioDNA Using 2'-Deoxy-4'-thionucleoside 5'-Triphosphates.2013

    • Author(s)
      Kojima, T. ; Furukawa, K. ; Maruyama, H. ; Inoue, N. ; Tarashima, N. ; Matsuda, A. ; Minakawa, N.
    • Journal Title

      ACS Synth. Biol.

      Volume: 2 Issue: 9 Pages: 529-536

    • DOI

      10.1021/sb400074w

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intracellular stability of 2'-OMe-4'-thioribonucleoside modified siRNA leads to long-term RNAi effect2012

    • Author(s)
      Mayumi Takahashi
    • Journal Title

      Nucleic Acids Research

      Volume: (in press) Issue: 12 Pages: 5787-5793

    • DOI

      10.1093/nar/gks204

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Double-stranded oligonucleotides containing 5-aminomethyl-2’-deoxyuridine form thermostable anti-parallel triplexes with single-stranded DNA or RNA.2012

    • Author(s)
      Shibata, A.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 22 Issue: 8 Pages: 2681-2683

    • DOI

      10.1016/j.bmcl.2012.03.024

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescence properties of 5-(5,6-dimethoxybenzothiazol-2-yl)-2'-deoxyuridine (btdU) and oligodeoxyribonucleotides containing btdU2011

    • Author(s)
      Hirose, W
    • Journal Title

      Eur.J.Org.Chem.

      Volume: 2011 Issue: 31 Pages: 6206-6217

    • DOI

      10.1002/ejoc.201100818

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Fluorescent 5-(5,6-Dimethoxybenzothiazol-2-yl)-2'-Deoxyuridine 5'-Triphosphate as an Efficient Substrate for DNA Polymerases2011

    • Author(s)
      Sato, K.
    • Journal Title

      ChemBioChem

      Volume: 12 Issue: 15 Pages: 2341-2346

    • DOI

      10.1002/cbic.201100452

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New imidazopyridopyrimidine : naphthyridine base-pairing motif, ImNN:NaOO, consisting of a DAAD:ADDA hydrogen bonding pattern, markedly stabilize DNA duplexes2011

    • Author(s)
      Kuramoto, K.
    • Journal Title

      Chem.Commun.

      Volume: 47 Issue: 38 Pages: 10818-10820

    • DOI

      10.1039/c1cc13805g

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly efficient enzymatic synthesis of 3'deoxyapionucleic acid(apioNA) having the four natural nucleobases2011

    • Author(s)
      Kataoka, M.
    • Journal Title

      Chem.Commun.

      Volume: 47 Issue: 30 Pages: 8700-8702

    • DOI

      10.1039/c1cc12980e

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Feature of DNA Recognized by HMGB12011

    • Author(s)
      Furuita, Kyoko ; Murata, Shunpei ; Jee, Jun Goo ; Ichikawa, Satoshi ; Matsuda, Akira ; Kojima, Chojiro
    • Journal Title

      J. Am. Chem. Soc

      Volume: 133 Issue: 15 Pages: 5788-5790

    • DOI

      10.1021/ja2013399

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 四本の水素結合対を持つ塩基対の酵素的取込みー第三の塩基対創出を目指してー2015

    • Author(s)
      松田 彰
    • Organizer
      日本薬学会第135年会、一般シンポジウム「アカデミア創薬に向けた核酸化学の新たな取り組み」
    • Place of Presentation
      神戸学院大学・兵庫
    • Year and Date
      2015-03-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 核酸医薬の組織標的化2015

    • Author(s)
      松田 彰
    • Organizer
      抗体医薬・核酸医薬開発コンソーシアムシンポジウム(医薬基盤研)
    • Place of Presentation
      コクヨホール・東京
    • Year and Date
      2015-01-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 核酸医薬の組織標的化2014

    • Author(s)
      松田 彰
    • Organizer
      アンチセンスDNA/RNA研究会・特別シンポジウム「核酸医薬の過去・現在・未来」
    • Place of Presentation
      東京ガーデンパレス・東京
    • Year and Date
      2014-09-07
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] バイオ創薬のススメ2014

    • Author(s)
      松田 彰
    • Organizer
      理研シンポジウム、第9回有機合成化学のフロンティア
    • Place of Presentation
      理化学研究所、埼玉
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ヌクレアーゼ抵抗性4'-チオ核酸誘導体を用いる核酸医薬の創製を目指して2011

    • Author(s)
      松田彰
    • Organizer
      第6回分子複合医薬研究会
    • Place of Presentation
      産業技術総合研究所関西センター(大阪府)(招待講演)
    • Year and Date
      2011-05-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] バイオ創薬のすすめ

    • Author(s)
      松田 彰
    • Organizer
      創薬懇話会2013
    • Place of Presentation
      定山渓ビューホテル(札幌市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] バイオ創薬のすすめ

    • Author(s)
      松田 彰
    • Organizer
      第3回CSJ化学フェスタ2013
    • Place of Presentation
      タワーホール船堀(東京都江戸川区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] バイオ創薬のススメ

    • Author(s)
      松田 彰
    • Organizer
      第32回白金シンポジウム-創薬研究の最前線-
    • Place of Presentation
      北里大学薬学部コンベンションホール(東京都港区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 2’-O-Me-4’-thioRNA as a Potential Use for Oligonucleotide Therapeutics

    • Author(s)
      Akira Matsuda
    • Organizer
      8th Annual Meeting of the Oligonucleotide therapeutics Society
    • Place of Presentation
      The Conference Center at the Harvard Medical School(USA)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Development of Sugar-modified Cytosine Nucleosides as Antitumor Agents,Old Stories for Future Success

    • Author(s)
      Akira Matsuda
    • Organizer
      20th International Roundtable for Nucleosides, Nucleotides & Nucleic Acids
    • Place of Presentation
      McGill University(Canada)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] Curr. Protoc. Nuceic Acid Chem.2014

    • Author(s)
      Minakawa, N.; Matsuda, A.
    • Total Pages
      15
    • Publisher
      Wiley
    • Related Report
      2014 Annual Research Report
  • [Book] Chemical Biology of Nucleic Acids, RNA Technologies,2014

    • Author(s)
      Minakawa, N.; Matsuda, A.
    • Total Pages
      599
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] 次世代がん戦略研究update がん基盤生物学―革新的シーズ育成に向けて-2013

    • Author(s)
      松田彰、清木元治、秋山徹、石川冬木、内海潤、近藤豊、中山敬一、平尾敦
    • Total Pages
      336
    • Publisher
      南山堂
    • Related Report
      2013 Annual Research Report
  • [Book] 核酸創薬:CSJカレントレビュー06,核酸化学のニュートレンド2011

    • Author(s)
      松田彰
    • Total Pages
      218
    • Publisher
      化学同人
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.pharm.hokudai.ac.jp/yakka/Matsuda_Lab/Matsuda_Lab_Home.html

    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] オリゴヌクレオチド誘導体、並びにオリゴヌクレオチド誘導体を含む治療用医薬組成物及び診断用医薬組成物2011

    • Inventor(s)
      松田彰, 高橋真由美
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Number
      2011-125734
    • Filing Date
      2011-06-03
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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