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Viral RNA factory formation and activation of antiviral innate immunity

Research Project

Project/Area Number 23249023
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Virology
Research InstitutionKyoto University

Principal Investigator

FUJITA Takashi  京都大学, ウイルス研究所, 教授 (10156870)

Co-Investigator(Renkei-kenkyūsha) KATO Hiroki  京都大学, ウイルス研究所, 准教授 (10597173)
TAKAHASI Kiyohiro  京都大学, ウイルス研究所, 助教 (90399965)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥49,530,000 (Direct Cost: ¥38,100,000、Indirect Cost: ¥11,430,000)
Fiscal Year 2013: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2012: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2011: ¥30,810,000 (Direct Cost: ¥23,700,000、Indirect Cost: ¥7,110,000)
Keywordsストレス / 感染症 / 免疫学 / ウイルス / インターフェロン / 自然免疫
Research Abstract

Invading viral RNA is sensed by RIG-I-like receptor (RLR) in the cytoplasm and antiviral innate immunity, including production of interferon, is induced. It was unclear where RLR senses viral RNA. We found that viral infection induces RNA-protein aggregates, in which RLR is recruited and acts as a platform for viral RNS sensing. We termed this aggregate as antiviral stress granule (avSG). We also found that several viruses actively inhibit avSG to facilitate their replication. Our findings also include that the double-stranded RNA sensors, PKR and DHX36 play critical roles in the formation of avSG.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (52 results)

All 2014 2013 2012 2011 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results,  Open Access: 1 results) Presentation (32 results) (of which Invited: 4 results) Book (4 results) Remarks (1 results)

  • [Journal Article] DHX36 Enhances RIG-I Signaling by Facilitating PKR-Mediated Antiviral Stress Granule Formation2014

    • Author(s)
      Yoo, J-S., Takahasi, K., Ng, CS., Ouda, R., Onomoto, K., Yoneyama, M., Lai, J-C., Lattmann, S., Nagamine, Y., Matsui, T., Iwabuchi, K., Kato, H. Fujita, T.
    • Journal Title

      PLoS Pathog

      Volume: 10(3) Issue: 3 Pages: 1-18

    • DOI

      10.1371/journal.ppat.1004012

    • NAID

      120005466661

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Autoimmune Disorders Associated with Gain of Function of the Intracellular Sensor MDA52014

    • Author(s)
      Funabiki M, Kato H, Miyachi M, Toki H, Motegi H, Inoue M, Minowa O, Yoshida A, Deguchi K, Sato H, Ito S, Shiroishi T, Takeyasu K, Noda T and Fujita T
    • Journal Title

      Immunity

      Volume: 40 Pages: 199-212

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional characterization of domains of IPS-1 using an inducible oligomerization system2013

    • Author(s)
      Takamatsu S,Onoguchi K, Onomoto K, Narita R, Takahasi K, Ishidate F, Fujiwara TK, Yoneyama M, Kato H, Fujita T
    • Journal Title

      PLoS One

      Volume: 8 Issue: 1 Pages: 1-9

    • DOI

      10.1371/journal.pone.0053578

    • NAID

      120005241348

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Encephalomyocarditis Virus Disrupts Stress Granules, the Critical Platform for Triggering Antiviral Innate Immune Responses2013

    • Author(s)
      Ng C-S, Jogi M, Yoo J-S, Onomoto K, Koike S, Iwasaki T, Yoneyama M, Kato H, Fujita T
    • Journal Title

      Journal of Virology

      Volume: 87 Pages: 9511-9522

    • NAID

      120005327032

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Production of a Dominant-Negative Fragment Due to G3BP1 Cleavage Contributes to the Disruption of Mitochondria-Associated Protective Stress Granules during CVB3 Infection2013

    • Author(s)
      Fung G, Ng C-S, Zhang J, Shi J, Wong J, Piesik P, Han L, Chu F, Jagdeo J, Jan E, Fujita T, Luo H
    • Journal Title

      PLoS ONE

      Volume: 8(11) Issue: 11 Pages: 1-15

    • DOI

      10.1371/journal.pone.0079546

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Virus-induced expression of retinoic acid inducible gene-I and melanoma differentiation-associated gene 5 in the cochlear sensory epithelium2013

    • Author(s)
      Hayashi Y, Onomoto K, Narita R, Yoneyama, M, Kato H, Nakagawa T, Ito J, Taura A, Fujita T
    • Journal Title

      Microbes and Infection

      Volume: 15 Pages: 592-598

    • NAID

      120005312147

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Critical Role of an Antiviral Stress Granule Containing RIG-I and PKR in Viral Detection and Innate Immunity2012

    • Author(s)
      Onomoto K, Jogi M, Yoo J-S, Narita R, Morimoto S, Takemura A, Sambhara S, Kawaguchi A, Osari S, Nagata K, Matsumiya T, Namiki H, Yoneyama M, Fujita T
    • Journal Title

      PLoS One

      Volume: 7 Issue: 8 Pages: 1-15

    • DOI

      10.1371/journal.pone.0043031

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recognition of viruses in the cytoplasm by RLRs and other helicases-how conformational changes, mitochondrial dynamics and ubiquitination control innate immune responses2012

    • Author(s)
      Ng C-S., Kato H. and Fujita T.
    • Journal Title

      International Immunology

      Volume: 24 Pages: 739-749

    • NAID

      120005395231

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Retinoic Acid-inducible Gene I-inducible miR-23b Inhibits Infections by Minor Group Rhinoviruses through Downregulation of the Very Low Density Lipoprotein Receptor2011

    • Author(s)
      Ouda, R., Onomoto, K., Takahasi, K., Edwards, M.R., Kato, H., Yoneyama, M. and Fujita, T.
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 26210-219

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] RIG-I-like receptors : cytoplasmic sensors for non-self RNA2011

    • Author(s)
      Kato, H., Takahasi, K. and Fujita, T.
    • Journal Title

      Immunological Reviews

      Volume: 243 Pages: 91-98

    • NAID

      120005587805

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dysregulation of IFN System Can Lead to Poor Response to Pegylated Interfere2011

    • Author(s)
      Onomoto, K., et al
    • Journal Title

      PLoS One

      Volume: 6

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retinoic Acid-inducible Gene I-inducible miR-23b Inhibits Infections by Minor Group Rhinoyiruses through Downregulation2011

    • Author(s)
      Ouda, R., et al
    • Journal Title

      J.Biol.Chem.

      Volume: 286 Pages: 26210-26219

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 55 Amino acid linker between helicase and carboxyl terminal domains of RIG-I2011

    • Author(s)
      Kageyama, M., et al
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 415 Pages: 75-81

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PAMPer and tRIGer : ligand-induced activation of RIG-I2011

    • Author(s)
      Bowzard, JB., Et al
    • Journal Title

      Trends Biochem Sci

      Volume: 36 Pages: 314-319

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retinoic Acid-Inducible Gene-I-Like Receptors2011

    • Author(s)
      Onoguchi, K., et al
    • Journal Title

      J.Interferon Cytokine Res

      Volume: 31 Pages: 27-31

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Regulation of antiviral innate immunity by RIG-I-like receptors2014

    • Author(s)
      Fujita T.
    • Organizer
      The NF-kB system in health and disease, Keystone Symposia
    • Place of Presentation
      Keystone USA
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Size-dependent sensing of viral RNA during antiviral responses2013

    • Author(s)
      Fujita T.
    • Organizer
      Positive strand RNA Viruses Keystone Symposia
    • Place of Presentation
      Boston USA
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] ウイルス感染によるストレス応答と抗ウイルス自然免疫応答の活性化2013

    • Author(s)
      藤田 尚志
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] DHX36 regulates innate immunity by mediating of PKR-RIG-I axis signaling pathway2012

    • Author(s)
      Yoo J-S, Kato H, Nagamine Y, Fujita T.
    • Organizer
      第77回日本インターフェロン・サイトカイン学会学術集会
    • Year and Date
      2012-06-21
    • Related Report
      2013 Final Research Report
  • [Presentation] 抗ウイルス自然免疫応答におけるアダプター分子 IPS-1のシグナル伝達機構の解析2012

    • Author(s)
      高松詩穂里、尾野本浩司、小野口和英、米山光俊、加藤博己、藤田尚志
    • Organizer
      第77回日本インターフェロン・サイトカイン学会学術集会
    • Year and Date
      2012-06-21
    • Related Report
      2013 Final Research Report
  • [Presentation] ウイルス NPによる顆粒形成の機構と生理的機能の解析2012

    • Author(s)
      呉成旭、尾野本浩司、高橋清大、石館文善、加藤博己、藤田尚志
    • Organizer
      第77回日本インターフェロン・サイトカイン学会学術集会
    • Year and Date
      2012-06-21
    • Related Report
      2013 Final Research Report
  • [Presentation] Antiviral Innate Immunity : Control of Interferon Production2012

    • Author(s)
      Fujita, T
    • Organizer
      NF-kappaB Signaling and Biology: From Bench to Bedside, Keystone Symposia
    • Place of Presentation
      Whistler, British Columbia, Canada
    • Year and Date
      2012-03-20
    • Related Report
      2013 Final Research Report
  • [Presentation] Antiviral Innate Immunity : Control of Interferon Production2012

    • Author(s)
      Fujita T.
    • Organizer
      NF-kappaB Signaling and Biology : From Bench to Bedsid
    • Place of Presentation
      Whistler, British Columbia
    • Year and Date
      2012-03-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sensing Viral RNA in Cytoplasm and Activation of Antiviral Innate Immunity2012

    • Author(s)
      Fujita, T.
    • Organizer
      Innate Immunity: Sensing the Microbes and Damage Signals, Keystone Symposia
    • Place of Presentation
      Keystone Colorado, USA
    • Year and Date
      2012-03-05
    • Related Report
      2013 Final Research Report
  • [Presentation] Sensing Viral RNA in Cytoplasm and Activation of Antiviral Innate Immunity2012

    • Author(s)
      Fujita T.
    • Organizer
      Innate Immunity : Sensing the Microbes and Damage Sig
    • Place of Presentation
      Keystone Colorado, USA
    • Year and Date
      2012-03-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] Recognition of Green Pepper dsRNA by Viral RNA Sensor2012

    • Author(s)
      Watanabe T, Miyata N, Kato H, Fujita T.
    • Organizer
      10th NTU-KU Joint Symposium on Molecular and Cell Biology
    • Place of Presentation
      Taipei, Taiwan
    • Related Report
      2013 Final Research Report
  • [Presentation] Cytoplasmic sensing of viral RNA by RIG-I-like receptors2012

    • Author(s)
      Fujita T.
    • Organizer
      Non-self RNA sensing in virus infected cells and activation of antiviral immunity
    • Place of Presentation
      Les Treilles, France
    • Related Report
      2013 Final Research Report
  • [Presentation] Mechanism and Physiological Role of Granules Formed by Viral Nucleocapsid Protein2012

    • Author(s)
      Go S, Onomoto K, Ishidate F, Kato H, Fujita T.
    • Organizer
      The 11th Awaji International Forum on Infection and Immunity
    • Place of Presentation
      Awaji
    • Related Report
      2013 Final Research Report
  • [Presentation] The anti-tumor agent DMXAA induces IFN-β response via STING2012

    • Author(s)
      Vo DN, Kato H, Fujita T.
    • Organizer
      The 11th Awaji International Forum on Infection and Immunity
    • Place of Presentation
      Awaji
    • Related Report
      2013 Final Research Report
  • [Presentation] Inhibition of virus-induced interferon gene activation through modulation of cytoplasmic stress granules by a viral protease2012

    • Author(s)
      Ng C-S, Kato H, FujitaT.
    • Organizer
      The 34th Naito Conference on Infection, Immunity and their Control for Health: Mucosal Barrier, Pathogen and Vaccine
    • Place of Presentation
      Sapporo
    • Related Report
      2013 Final Research Report
  • [Presentation] Detection of cytoplasmic non-self RNA and activation of antiviral innate immunity2012

    • Author(s)
      Fujita T.
    • Organizer
      International Endotoxin and Innate Immunity Society Meeting 2012
    • Place of Presentation
      Tokyo
    • Related Report
      2013 Final Research Report
  • [Presentation] Sensing viral RNA in cytoplasm and activation of the interferon system2012

    • Author(s)
      Fujita T
    • Organizer
      CGEB Workshop "Human RNA Viruses"
    • Place of Presentation
      Buenos Aires, Argentina
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Cytoplasmic sensing of viral RNA by RIG-I-like receptors2012

    • Author(s)
      Fujita T
    • Organizer
      Non-self RNA sensing in virus infected cells and activation of antiviral immunity
    • Place of Presentation
      Le Treilles, France
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Detection of cytoplasmic non-self RNA and activation of antiviral innate immunity2012

    • Author(s)
      Fujita T
    • Organizer
      International Endotoxin and Innate Immunity Society Meeting 2012
    • Place of Presentation
      Tokyo Japan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Viral replication and its detection by RIG-I-Like Receptors : Formation of RIG-I granules and signal transduction through mitochondrion2011

    • Author(s)
      Fujita T.
    • Organizer
      International Union of Microbiological Societies Congresses 2011
    • Place of Presentation
      Sapporo, Japan
    • Year and Date
      2011-09-13
    • Related Report
      2013 Final Research Report
  • [Presentation] Viral replication and its detection by RIG-I-Like Receptors : Formation of R2011

    • Author(s)
      Fujita T.
    • Organizer
      IUMS 2011
    • Place of Presentation
      Sapporo, Japan
    • Year and Date
      2011-09-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Antiviral Innate Immunity Induced by RIG-I-Like Receptors2011

    • Author(s)
      Fujita T.
    • Organizer
      Inter-University Biochemistry Postgraduate Symposium in Hong Kong
    • Place of Presentation
      Hong Kong
    • Year and Date
      2011-06-11
    • Related Report
      2013 Final Research Report
  • [Presentation] Antiviral Innate Immunity Induced by RIG-I-Like Receptors2011

    • Author(s)
      Fujita T.
    • Organizer
      Inter-University Biochemistry Postgraduate Symposium
    • Place of Presentation
      Hong Kong
    • Year and Date
      2011-06-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] Activation of an antiviral program through the cytoplasmic recogntition of n2011

    • Author(s)
      Fujita T.
    • Organizer
      9th Kyoto University and National Taiwan University
    • Place of Presentation
      Kyoto Japan
    • Year and Date
      2011-06-04
    • Related Report
      2011 Annual Research Report
  • [Presentation] Antiviral Innate Immunity : Sensing Viral RNA and Signal Transduction2011

    • Author(s)
      Fujita T.
    • Organizer
      JSICR-MMCB 2011
    • Place of Presentation
      Kyoto Japan
    • Year and Date
      2011-05-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] Non-self RNA Sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses2011

    • Author(s)
      Fujita T.
    • Organizer
      CSH Asia Conferences Infection and Immunity
    • Place of Presentation
      Suzhou, China
    • Related Report
      2013 Final Research Report
  • [Presentation] Viral replication and its detection by RIG-I-Like Receptors : Formation of RIG-I granules and signal transduction through mitochondrion2011

    • Author(s)
      Fujita, T.
    • Organizer
      2011 International Symposium on Infectious Disease and Signal Transduction
    • Place of Presentation
      Tainan, Taiwan
    • Related Report
      2013 Final Research Report
  • [Presentation] Viral replication and its detection by RIG-I-Like Receptors : Formation of R2011

    • Author(s)
      Fujita T.
    • Organizer
      The Uehara Memorial Foundation Symposium-2011
    • Place of Presentation
      Tokyo Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Non-self RNA Sensing Mechanism of RIG-I Helicase and Activation of Antiviral2011

    • Author(s)
      Fujita T.
    • Organizer
      CSH Asia Conferences Infection and Immunity
    • Place of Presentation
      Suzhou, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] Viral replication and its detection by RIG-I-Like Receptors : Formation of R2011

    • Author(s)
      Fujita T.
    • Organizer
      2011 International Symposium on Infectious Disease a
    • Place of Presentation
      Tainan, Taiwan
    • Related Report
      2011 Annual Research Report
  • [Presentation] RIG-I-inducible miR-23b inhibits infections by minor group rhinoviruses thre2011

    • Author(s)
      Ouda, R., et al
    • Organizer
      The 18th East Asia Joint Symposium on Biomedical Rese
    • Place of Presentation
      Shanghai, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sensing viral RNA in cytoplasm and activation of the interferon system

    • Author(s)
      Fujita, T
    • Organizer
      ICGEB Workshop "Human RNA Viruses"
    • Place of Presentation
      Buenos Aires, Argentina
    • Related Report
      2013 Final Research Report
  • [Book] Intracellular Viral RNA Sensors: RIG.I Like Receptors in Nucleic Acid Sensors and Antiviral Immunity2011

    • Author(s)
      Seiji P. Yamamoto, Ryo Narita, Seigyoku Go, Kiyohiro Takahasi, Hiroki Kato and Takashi Fujita(Ed. Suryaprakash Sambhara and Takashi Fujita)
    • Related Report
      2013 Final Research Report
  • [Book] Innate Immune Regulation and Cancer Immunotherapy2011

    • Author(s)
      Yoneyama, H., Fujita, T.
    • Publisher
      Springer
    • Related Report
      2011 Annual Research Report
  • [Book] Nucleic Acid Sensors and Antiviral Immunity2011

    • Author(s)
      Yamamoto, SP., et al
    • Publisher
      Landes Bioscience
    • Related Report
      2011 Annual Research Report
  • [Book] seriesモデル動物利用マニュアル2011

    • Author(s)
      船曳正英、藤田尚志
    • Publisher
      株エル・アイ・シー
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/bunshiiden2012/Japanese/index.html

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-04-06   Modified: 2023-03-16  

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