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Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA

Research Project

Project/Area Number 23300112
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

HORTON Paul  独立行政法人産業技術総合研究所, ゲノム情報研究センター, 研究センター長 (00371071)

Co-Investigator(Kenkyū-buntansha) MITSUYAMA Toutai  独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究チーム長 (20415673)
FRITH Martin  独立行政法人産業技術総合研究所, 生命情報工学研究センター, 主任研究員 (40462832)
TOMII Kentaro  独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究チーム長 (40357570)
IMAI Kenichiro  独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究員 (80442573)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,020,000 (Direct Cost: ¥15,400,000、Indirect Cost: ¥4,620,000)
Fiscal Year 2013: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2012: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2011: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
KeywordsmRNA局在 / ミトコンドリア / mRNA配列解析 / タンパク質局在
Research Abstract

Mitochondria dysfunction has been implicated in Alzheimer's and other diseases, but the cellular mechanisms used to maintain mitochondria are only partially understood. Thus we investigated the transport of proteins into the mitochondria and quantitatively showed that a particular region of those proteins evolves faster than other proteins (Fukasawa et al. BMC Genomics 2014). In addition we investigated the localization of mRNA molecules in the vicinity of mitochondria. We did this by integrative statistical analysis of several published datasets. Based on the results of our analysis we propose a novel hypothesis -- that the longer it takes for proteins to be made (translation initiation), the more likely it is that they localize to the periphery of the mitochondria. By providing insights into the mechanisms responsible for maintenance of mitochondrial, in the future our results may contribute to advances in the prevention or treatment of mitochondria related disease.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (9 results)

All 2014 2013 2012 2011

All Journal Article (2 results) (of which Peer Reviewed: 1 results) Presentation (7 results) (of which Invited: 2 results)

  • [Journal Article] Plusc a change - evolutionary sequence divergence predicts protein subcellular localization signals2014

    • Author(s)
      Yoshinori Fukasawa, Ross KK Leung, Stephen KW Tsui & Paul Horton
    • Journal Title

      BMC Genomics

      Volume: 15 Pages: 46-46

    • Related Report
      2013 Final Research Report
  • [Journal Article] Plus ça change- evolutionary sequence divergence predicts protein subcellular localization signals2014

    • Author(s)
      Yoshinori Fukasawa, et al.
    • Journal Title

      BMC Genomics

      Volume: 15 Issue: 1 Pages: 1-15

    • DOI

      10.1186/1471-2164-15-46

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Advances in Predictiing Protein Sub-cellular Localization Signals2013

    • Author(s)
      Paul Horton
    • Organizer
      InCoB 2013
    • Place of Presentation
      Taicang, China
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Recent Advances in Understanding Protein Sub-cellular Localization Signals2013

    • Author(s)
      Paul Horton
    • Organizer
      UQ Winter School in Mathematical & Computational Biology
    • Place of Presentation
      Brisbane, Australia
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] What is determinant of mitochondrial localizing mRNA ?2012

    • Author(s)
      今井 賢一郎
    • Organizer
      Biwo2012
    • Place of Presentation
      東京・江東区
    • Related Report
      2012 Annual Research Report
  • [Presentation] Utilizing probabilistic dependencies in low-complexity regions when detecting homologous regions of biological sequences.2012

    • Author(s)
      Poulsen Thomas
    • Organizer
      ISCB-ASIA
    • Place of Presentation
      Shenzhen, China
    • Related Report
      2012 Annual Research Report
  • [Presentation] Utilizing probabilistic dependencies in low-complexity regions when detecting homologous regions of biological sequences.(ポスター発表)2012

    • Author(s)
      Poulsen Thomas
    • Organizer
      Biwo2012
    • Place of Presentation
      東京・江東区
    • Related Report
      2012 Annual Research Report
  • [Presentation] Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA2011

    • Author(s)
      崎山 則征, 今井 賢一郎, 富井 健太郎
    • Organizer
      第34回日本分子生物学会 2011年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2013 Final Research Report
  • [Presentation] Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA2011

    • Author(s)
      Horton Paul
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神奈川県横浜市パシフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2021-04-07  

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