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Lineage potential regulated by high order chromatin structure

Research Project

Project/Area Number 23310134
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genome biology
Research InstitutionKyushu University

Principal Investigator

OHKAWA Yasuyuki  九州大学, 医学研究院, 准教授 (80448430)

Co-Investigator(Kenkyū-buntansha) OKADA Seiji  九州大学, 医学(系)研究科(研究院), 准教授 (30448435)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,540,000 (Direct Cost: ¥15,800,000、Indirect Cost: ¥4,740,000)
Fiscal Year 2013: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2012: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2011: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywordsクロマチン / 骨格筋分化 / 次世代シークエンサー / ジーンクラスタリング
Research Abstract

Lineage potential is triggered by lineage-specific transcription factor expression in association with structural chromatin changes. Histone H3.3 variant is a critical chromatin component that regulates lineage potential, but the function of each H3 variant remains unclear. Here, we found that forced incorporation of H3.1 (canonical H3 variant) into lineage-specific genes diminished trimethylation on H3K4 (H3K4me3) and increased trimethylation on H3K27 (H3K27me3), resulting in loss of lineage potential. In mouse embryos, bivalent modifications of H3K4me3 and H3K27me3 were equivalently formed on the H3.3-incorporated region before embryonic skeletal muscle differentiation at myogenic loci. These results suggest that lineage potential is established through selective H3.3 incorporation into chromatin and is defined by a quantitative balance among histone modifications.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (98 results)

All 2014 2013 2012 2011 Other

All Journal Article (23 results) (of which Peer Reviewed: 21 results) Presentation (60 results) (of which Invited: 11 results) Book (9 results) Remarks (6 results)

  • [Journal Article] Generation of a Monoclonal Antibody for INI1/hSNF5/BAF47.2014

    • Author(s)
      Harada A, Hayashi M, Kuniyoshi Y, Semba Y, Sugahara S, Tachibana T, Ohkawa Y, Fujita M.
    • Journal Title

      Monoclonal Antibodies Immunodiagnosis and Immunotherapy

      Volume: 33 Issue: 1 Pages: 49-51

    • DOI

      10.1089/mab.2013.0065

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Production of a Monoclonal Antibody for C/EBPB : The Subnuclear Localization of C/EBPB in Mouse L929 Cells.2014

    • Author(s)
      Harada A, Okazaki E, Okada S, Tachibana T, Ohkawa Y.
    • Journal Title

      Monoclonal Antibodies Immunodiagnosis and Immunotherapy

      Volume: 33 Issue: 1 Pages: 34-37

    • DOI

      10.1089/mab.2013.0069

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The PPARγ locus makes long-range chromatin interactions with selected tissue-specific gene loci during adipocyte differentiation in a protein kinase A dependent manner2014

    • Author(s)
      LeBlanc SE, Wu Q, Barutcu AR, Xiao H, Ohkawa Y, Imbalzano AN
    • Journal Title

      PLoS One

      Volume: 9(1) Issue: 1 Pages: e86140-e86140

    • DOI

      10.1371/journal.pone.0086140

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I2013

    • Author(s)
      Katahira J, Okuzaki D, Inoue H, Yoneda Y, Maehara K, Ohkawa Y
    • Journal Title

      Nucleic Acids Res

      Volume: 41(14) Issue: 14 Pages: 7060-72

    • DOI

      10.1093/nar/gkt414

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The therapeutic activities of engrafted neural stem/precursor cells are not dormant in the chronically injured spinal cord2013

    • Author(s)
      Kumamaru H, Kobayakawa K, Saiwai H, Kubota K, Yokota K, Ohkawa Y, Shiba K, Iwamoto Y, Okada S
    • Journal Title

      Stem Cells

      Volume: 31(8) Issue: 8 Pages: 1535-47

    • DOI

      10.1002/stem.1404

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples2013

    • Author(s)
      Maehara K, Odawara J, Harada A, Yoshimi T, Nagao K, Obuse C, Akashi K, Tachibana T, Sakata T, and Ohkawa Y
    • Journal Title

      Nucleic Acids Res

      Volume: 41 Issue: 1 Pages: 54-62

    • DOI

      10.1093/nar/gks1010

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima, Oki, Ohkawa, Sumi, Meno
    • Journal Title

      Dev Biol

      Volume: 380 Issue: 2 Pages: 222-32

    • DOI

      10.1016/j.ydbio.2013.05.011

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ly6C+ Ly6G- Myeloid-derived suppressor cells play a critical role in the resolution of acute inflammation and the subsequent tissue repair process after spinal cord injury.2013

    • Author(s)
      Saiwai H, Kumamaru H, Ohkawa Y, Kubota K, Kobayakawa K, Yamada H, Yokomizo T, Iwamoto Y, Okada S.
    • Journal Title

      J Neurochem.

      Volume: 125 Issue: 1 Pages: 74-88

    • DOI

      10.1111/jnc.12135

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A panel of specific monoclonal antibodies directed against various phosphorylated histones H3.2013

    • Author(s)
      Yoshimi T, Ohkawa Y, Azuma M, Tachibana T.
    • Journal Title

      Monoclon Antib Immunodiagn Immunother.

      Volume: 32 Issue: 2 Pages: 119-124

    • DOI

      10.1089/mab.2012.0105

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] β-Catenin signaling regulates Foxa2 expression during endometrial hyperplasia formation2013

    • Author(s)
      Villacorte M, Suzuki K, Hirasawa A, Ohkawa Y, Suyama M, Maruyama T, Aoki D, Ogino Y, Miyagawa S, Terabayashi T, Tomooka Y, Nakagata N, Yamada G
    • Journal Title

      Oncogene

      Volume: 32 Issue: 29 Pages: 3477-3482

    • DOI

      10.1038/onc.2012.376

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chd2 interacts with H3.3 to determine myogenic cell fate2012

    • Author(s)
      Harada A, Okada S, Konno D, Odawara J, Yoshimi T, Yoshimura S, Kumamaru H, Saiwai H, Tsubota T, Kurumizaka H, Akashi K, Tachibana T, Imbalzano AN, Ohkawa Y
    • Journal Title

      EMBO J

      Volume: 31 Issue: 13 Pages: 2994-3007

    • DOI

      10.1038/emboj.2012.136

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Age-related differences in the cellular and molecular profiles of inflammatory responses after spinal cord injury2012

    • Author(s)
      Kumamaru H, Saiwai H, Ohkawa Y, Yamada H, Iwamoto Y, Okada S
    • Journal Title

      Journal of Cellular Physiology

      Volume: 227 Issue: 4 Pages: 1335-46

    • DOI

      10.1002/jcp.22845

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct isolation and RNA-Seq reveal environment-dependent properties of engrafted neural stem/progenitor cells2012

    • Author(s)
      Kumamaru H, Ohkawa Y, Saiwai H, Yamada H, Kubota K, Kobayakawa K, Akashi K, Okano H, Iwamoto Y, Okada S
    • Journal Title

      Nat Commun

      Volume: 3 Issue: 1 Pages: 1140-1140

    • DOI

      10.1038/ncomms2132

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Surf4 modulates STIM1-dependent calcium entry.2012

    • Author(s)
      Fujii, Y. et al
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 422 Issue: 4 Pages: 615-620

    • DOI

      10.1016/j.bbrc.2012.05.037

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays2012

    • Author(s)
      Ohkawa Y, Mallappa C, et al
    • Journal Title

      Methods Mol Biol

      Volume: 798 Pages: 517-30

    • Related Report
      2011 Annual Research Report
  • [Journal Article] An improved restriction enzyme accessibility assay for analyzing changes in chromatin structure in samples of limited cell number2012

    • Author(s)
      Ohkawa Y, Mallappa C, et al
    • Journal Title

      Methods Mol Biol

      Volume: 798 Pages: 531-42

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Myeloperoxidase Exacerbates Secondary Injury by Generating Highly Reactive Oxygen Species and Mediating Neutrophil Recruitment in Experimental Spinal Cord Injury2012

    • Author(s)
      Kubota K, Saiwai H, Kumamaru H, Maeda T, Ohkawa Y, et al
    • Journal Title

      Spine

      Volume: (In press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on geneome-wide approach2011

    • Author(s)
      Odawara J, Harada A, Yoshimi T, Maehara K, Tachbana T, Okada S, Akashi K, Ohkawa Y
    • Journal Title

      BMC Genomics

      Volume: 12 Issue: 1 Pages: 516-516

    • DOI

      10.1186/1471-2164-12-516

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for HSP722011

    • Author(s)
      Tanaka K, Shiota M, Okada S, Harada A, Odawara J, Mun S, Iwao H, Ohkawa Y
    • Journal Title

      Hybridoma

      Volume: 30 Issue: 4 Pages: 397-400

    • DOI

      10.1089/hyb.2011.0015

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Chromatin accessibility and transcription factor binding at the PPARγ2 promoter during adipogenesis is protein kinase A-dependent2011

    • Author(s)
      Xiao H, Leblanc SE, et al., Ohkawa Y, Imbalzano AN
    • Journal Title

      J Cell Physiol

      Volume: 1 Pages: 86-93

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flow cytometric sorting of neuronal and glial nuclei from central nervous system tissue2011

    • Author(s)
      Okada S, Saiwai H, et al., Ohkawa Y
    • Journal Title

      J Cell Physiol

      Volume: 2 Pages: 552-8

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of a rat monoclonal antibody specific for hsp722011

    • Author(s)
      Tanaka M, Shiota M, et al., Ohkawa Y
    • Journal Title

      Hybridoma

      Volume: 4 Pages: 397-400

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach2011

    • Author(s)
      Odawara J, Harada A, et al., Ohkawa Y
    • Journal Title

      BMC Genomics

      Volume: 12(web)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] The balance of histone H3 variants around transcription start sites dictates cell differential potential2014

    • Author(s)
      Akihito Harada, Kazumitsu Maehara, Yasuyuki Ohkawa
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe Community Convention Center (USA)
    • Year and Date
      2014-02-06
    • Related Report
      2013 Final Research Report
  • [Presentation] The formation of nucleosome positioning patterns flanked by transcription factor binding site2014

    • Author(s)
      Kazumitsu Maehara, Yasuyuki Ohkaw
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe Community Convention Center (USA)
    • Year and Date
      2014-02-06
    • Related Report
      2013 Final Research Report
  • [Presentation] 骨格筋分化運命を決定するゲノムマーキング機構2014

    • Author(s)
      大川 恭行
    • Organizer
      IGER seminar
    • Place of Presentation
      名古屋大学理学E館 131号室(名古屋)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] The formation of nucleosome positioning patterns flanked by transcription factor binding site2014

    • Author(s)
      Kazumitsu Maehara, Yasuyuki Ohkawa
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe Community Convention Center(USA)
    • Related Report
      2013 Annual Research Report
  • [Presentation] The balance of histone H3 variants around transcription start sites dictates cell differential potential2014

    • Author(s)
      Akihito Harada, Kazumitsu Maehara, Yasuyuki Ohkawa
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Santa Fe Community Convention Center(USA)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンH3 バリアントの選択的取り込みは骨格筋分化能を支配する2013

    • Author(s)
      原田哲仁 ,前原一満 ,佐藤優子, 今野大治郎, 立花太郎, 木村宏, 大川恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Year and Date
      2013-12-05
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンH3 バリアントは骨格筋分化能を決定する2013

    • Author(s)
      大川恭行, 原田哲仁, 前原一満
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Year and Date
      2013-12-05
    • Related Report
      2013 Final Research Report
  • [Presentation] 単一のChIP-Seq データを使った細胞分化におけるヌクレオソーム配置と転写因子結合の一体的解析2013

    • Author(s)
      前原一満, 大川恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Year and Date
      2013-12-05
    • Related Report
      2013 Final Research Report
  • [Presentation] マウス胚性幹細胞においてChromodomain Helicase DNA binding protein (Chd5)はOct3/4 と共役して未分化性の維持に寄与する2013

    • Author(s)
      林正康, 小田原淳, 原田哲仁, 前原一満, 吉見智彦, 立花太郎, 赤司浩一, 大川恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Year and Date
      2013-12-04
    • Related Report
      2013 Final Research Report
  • [Presentation] Epigenomic approach unveils cell fate decision2013

    • Author(s)
      大川恭行
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶応大学日吉キャンパス(神奈川)
    • Year and Date
      2013-09-21
    • Related Report
      2013 Final Research Report
  • [Presentation] High order chromatin regulation in skeletal muscle differentiation2013

    • Author(s)
      Yasuyuki Ohkawa, Hitoshi Kurumizaka, Hiroshi Kimura
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2013-09-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Histone bariants determine the lineage potential of skeletal muscle2013

    • Author(s)
      大川恭行
    • Organizer
      Fukuoka Internasional Symposium on Genomics & Epigenomics 2013
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2013-09-10
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンバリアントH3.3 による細胞運命決定2013

    • Author(s)
      大川恭行
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウィンクあいち(名古屋)
    • Year and Date
      2013-06-20
    • Related Report
      2013 Final Research Report
  • [Presentation] 共局在性を評価する回帰モデルとENCODE データセットを用いたChlP-seq データの複数サンプル比較解析法2013

    • Author(s)
      前原一満, 小田原淳, 原田哲仁, 大川恭行
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウィンクあいち(名古屋)
    • Year and Date
      2013-06-19
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンバリアントによる骨格筋運命決定2013

    • Author(s)
      大川恭行, 原田哲仁
    • Organizer
      第7回日本エピジェネティクス研究会年会
    • Place of Presentation
      奈良県新公会堂
    • Year and Date
      2013-05-31
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 次世代シークエンサーによる細胞分化運命決定メカニズムの解明2013

    • Author(s)
      大川恭行
    • Organizer
      第56回日本腎臓学会学術総会
    • Place of Presentation
      東京国際フォーラム
    • Year and Date
      2013-05-11
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] A novel approach to identify mutations responsible for leukemogenesis based on epigenetic inforimation2013

    • Author(s)
      小田原 淳, Kohta Miyawaki ,Junichiro Yuda,林 正康,前原 一満,Kentaro Kohno ,Takahiro Shima , Masao Nagasaki,大川 恭行, Koichi Akashi
    • Organizer
      第11回幹細胞シンポジウム
    • Place of Presentation
      伊藤国際学術研究センター(東京)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンバリアントH3.3による細胞運命決定2013

    • Author(s)
      大川 恭行
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウィンクあいち(愛知)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 共局在性を評価する回帰モデルとENCODEデータセットを用いたChlP-seqデータの複数サンプル比較解析法2013

    • Author(s)
      前原 一満、小田原 淳、原田 哲仁、大川 恭行
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウィンクあいち(愛知)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 細胞分化における高次クロマチン構造制御機構2013

    • Author(s)
      大川 恭行
    • Organizer
      千里ライフサイエンスセミナー「エピジェネティクス制御からの生命活動の理解とその展望」
    • Place of Presentation
      千里ライフサイエンスセンタービル(大阪)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 生命を形作る道の暗号を解読する2013

    • Author(s)
      大川 恭行
    • Organizer
      一般公開シンポジウム「DNAをあやつる生物のしくみ」
    • Place of Presentation
      千里ライフサイエンスセンタービル(大阪)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Histone bariants determine the lineage potential of skeletal muscle2013

    • Author(s)
      大川 恭行
    • Organizer
      Fukuoka Internasional Symposium on Genomics & Epigenomics 2013
    • Place of Presentation
      九州大学 総合研究棟(福岡)
    • Related Report
      2013 Annual Research Report
  • [Presentation] High order chromatin regulation in skeletal muscle differentiation2013

    • Author(s)
      Yasuyuki Ohkawa, Hitoshi Kurumizaka, Hiroshi Kimura
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンバリアントによる細胞運命制御2013

    • Author(s)
      大川 恭行
    • Organizer
      セミナー
    • Place of Presentation
      (独)国立成育研究医療センター(東京)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Epigenomic approach unveils cell fate decision2013

    • Author(s)
      大川 恭行
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      慶応大学 日吉キャンパス(神奈川)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 骨格筋分化運命決定のメカニズムを追う~クロマチン構造からみる筋形成~2013

    • Author(s)
      大川 恭行
    • Organizer
      第一回若手による骨格筋研究会
    • Place of Presentation
      京都大学 iPS細胞研究所(京都)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 単一のChIP-Seqデータを使った細胞分化におけるヌクレオソーム配置と転写因子結合の一体的解析2013

    • Author(s)
      前原 一満, 大川 恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Related Report
      2013 Annual Research Report
  • [Presentation] RNA polymerase IIのC末端ドメイン構造の非リン酸化修飾の網羅的解読2013

    • Author(s)
      小田原 淳, 前原 一満, 成相 直樹,原田 哲仁,林 正康,植野 和子,吉見 智彦,立花 太郎, 長崎 正朗, 赤司 浩一,大川 恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Related Report
      2013 Annual Research Report
  • [Presentation] マウス胚性幹細胞においてChromodomain Helicase DNA binding protein (Chd5)はOct3/4と共役して未分化性の維持に寄与する2013

    • Author(s)
      林 正康, 小田原 淳,原田 哲仁,前原 一満, 吉見 智彦,立花 太郎,赤司 浩一,大川 恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンH3バリアントは骨格筋分化能を決定する2013

    • Author(s)
      大川 恭行,原田 哲仁, 前原 一満
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヒストンH3バリアントの選択的取り込みは骨格筋分化能を支配する2013

    • Author(s)
      原田 哲仁,前原 一満,佐藤 優子,今野 大治郎,立花 太郎,木村 宏,大川 恭行
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 共局在回帰モデルとENCODE データセットを介したChIP-seq データの多サンプル比較解析2012

    • Author(s)
      前原一満, 小田原淳, 原田哲仁, 吉見智彦, 長尾恒治, 小布施力史, 立花太郎, 坂田年男, 大川恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      第35 回日本分子生物学会年会
    • Year and Date
      2012-12-14
    • Related Report
      2013 Final Research Report
  • [Presentation] 高次クロマチン構造制御による骨格筋分化制御2012

    • Author(s)
      大川恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Chd2 依存的なH3.3 マーキングが筋発生における骨格筋遺伝子のbivalent geneの形成に必要である2012

    • Author(s)
      原田哲仁, 小田原淳, 前原一満, 立花太郎, 木村宏, 大川恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-11
    • Related Report
      2013 Final Research Report
  • [Presentation] 高次クロマチン構造における細胞分化運命決定2012

    • Author(s)
      大川恭行
    • Organizer
      第33回日本炎症・再生医学会
    • Place of Presentation
      ホテル日航福岡
    • Year and Date
      2012-07-05
    • Related Report
      2013 Final Research Report
  • [Presentation] ヒストンバリアントH3.3 取り込みによる骨格筋分化運命決定2012

    • Author(s)
      大川恭行
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター(東京)
    • Year and Date
      2012-05-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Control of gene expression through the phosphorylation of Ser2 and Ser5 of RNAPII : A combined analysis for ChIPseq and RNAseq2012

    • Author(s)
      Jun Odawara, Akihito Harada, Yasuyuki Ohkawa
    • Organizer
      KEYSTONE SYMPOSIA
    • Place of Presentation
      Keystone Resort (USA)
    • Year and Date
      2012-01-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Chd-2 dependent deposition of H3.3 is required for myogenic cell fate2012

    • Author(s)
      Akihito Harada, Anthony N. Imbalzano, Yasuyuki Ohkawa
    • Organizer
      KEYSTONE SYMPOSIA
    • Place of Presentation
      Keystone Resort (USA)
    • Year and Date
      2012-01-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Chd-2 dependent deposition of H3.3 is required for myogenic cell fate2012

    • Author(s)
      大川恭行
    • Organizer
      KEYSTONE SYMPOSIA
    • Place of Presentation
      KEYSTONE RESORT, USA
    • Year and Date
      2012-01-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] Control of gene expression through the phosphorylation of Ser2 and Ser5 of RNAP II : A combined analysis for ChIPseq and RNAseq2012

    • Author(s)
      原田哲仁, 大川恭行
    • Organizer
      KEYSTONE SYMPOSIA
    • Place of Presentation
      KEYSTONE RESORT, USA
    • Year and Date
      2012-01-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] The deposition of histone varients is the basis of chromatin structual changes in cell fate decision2011

    • Author(s)
      Yasuyuki Ohkawa, Jun Odawara, Akihito Harada
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2011-12-16
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] Chd-2 dependent deposition of H3.3 is crucial for Brg1 recruitment in myogenesis2011

    • Author(s)
      Akihito Harada, Jun Odawara, Kazumitu Maehara, Tomohiko Yoshimi, Saori Yoshimura, Taro Tachibana, Hitoshi Kurumizaka, Hiroshi Kimura, Yasuyuki Ohkawa
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2011-12-16
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] Visualization for nuclear distribution of PPARδ in myoblast2011

    • Author(s)
      澤野祥子, 大川恭行
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] Control of gene expression through the phosphorylation of Ser2 and Ser5 of RNAPII : A combined analysis for ChIPseq and RNAseq2011

    • Author(s)
      Kazumitu Maehara, Jun Odawara, Akihito Harada, Tomohiko Yoshimi, Taro Tachibana, Yasuyuki Ohkawa
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2011-12-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Control of gene expression through the phosphorylation of Ser2 and Ser5 of RNAP II : A combined analysis for ChIPseq and RNAseq2011

    • Author(s)
      前原一満, 大川恭行
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒストンバリアントH3.3取り込みによる骨格筋分化運命決定

    • Author(s)
      大川 恭行
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 高次クロマチン構造における細胞分化運命決定

    • Author(s)
      大川 恭行
    • Organizer
      第33回日本炎症・再生医学会
    • Place of Presentation
      ホテル日航福岡(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 遺伝子をすべて見る研究への挑戦

    • Author(s)
      大川 恭行
    • Organizer
      「京」シンポジウム:新生命科学分野開拓とスーパーコンピュータ「京」
    • Place of Presentation
      九州大学医学部百年講堂(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 遺伝子をすべて見る研究への試み-多様化するエピゲノム解析-

    • Author(s)
      大川 恭行
    • Organizer
      HPCIワークショップ2012(日本バイオインフォマティクス学会 創薬インフォマティクス研究会)
    • Place of Presentation
      産総研臨海副都心センター(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ヒストンバリアントH3.3取り込みによる骨格筋分化運命決定

    • Author(s)
      大川 恭行
    • Organizer
      平成24年度遺伝研研究会「染色体ドメインの形成と機能発現機構」
    • Place of Presentation
      国立遺伝学研究所(静岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Chd2 incorporates H3.3 to mark myogenic genes.

    • Author(s)
      大川 恭行
    • Organizer
      新学術領域「ゲノム支援」国際シンポジウム”Expanding Frontiers of Genome Science”
    • Place of Presentation
      東京大学 伊藤国際学術研究センター(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] The deposition of histone variant H3.3 mediated by transcription factors determines hematopoietic cell fate.

    • Author(s)
      Jun Odawara, Kohta Miyawaki, Kentaro Kohno, Takahiro Shima, Masao Nagasaki, Yasuyuki Ohkawa, Koichi Akashi.
    • Organizer
      第10回幹細胞シンポジウム
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 骨格筋分化における高次クロマチン構造制御機構の解明

    • Author(s)
      大川 恭行
    • Organizer
      新学術領域「遺伝情報収納・発現・継承の時空間場」・第5回班会議
    • Place of Presentation
      ルスツリゾート(北海道)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 高次クロマチン構造制御による骨格筋分化制御

    • Author(s)
      大川 恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Chd2依存的なH3.3マーキングが筋発生における骨格筋遺伝子のbivalent geneの形成に必要である

    • Author(s)
      原田 哲仁, 小田原 淳, 前原 一満, 立花 太郎, 木村 宏, 大川 恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] CHD5(Chromodomain helicase DNA binding protein 5)はマウスの胚性幹細胞においてH3.1と結合して遺伝子発現を抑制しうる

    • Author(s)
      林 正康, 小田原 淳, 原田 哲仁, 前原 一満, 立花 太郎, 赤司 浩一, 大川 恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 共局在回帰モデルとENCODEデータセットを介したChIP-seqデータの多サンプル比較解析

    • Author(s)
      前原 一満, 小田原 淳, 原田 哲仁, 吉見 智彦, 長尾 恒治, 小布施 力史, 立花 太郎, 坂田 年男, 大川 恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] モノクローナル抗体を用いたリン酸化ヒストンH3の解析

    • Author(s)
      吉見 智彦, 大川 恭行, 東 雅之, 立花 太郎
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 選択的なヒストンバリアントH3.3の取り込みによる造血細胞分化運命決定機構の解明

    • Author(s)
      小田原 淳, 植野 和子, 成相 直樹, 林 正康, 前原 一満, 原田 哲仁, 宮脇 恒太, 河野 健太郎, 島 隆宏, 吉見 智彦, 立花 太郎, 赤司 浩一, 長崎 正朗, 大川 恭行
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒストンバリアントによる骨格筋分化制御機構

    • Author(s)
      大川 恭行
    • Organizer
      第1回ヒストンバリアント研究会
    • Place of Presentation
      九州大学総合研究棟(福岡)
    • Related Report
      2012 Annual Research Report
  • [Book] エピジェネティクスで解く細胞運命制御,クロマチン構造から理解する細胞運命決, 実験医学2013

    • Author(s)
      大川恭行, 原田哲仁
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report
  • [Book] ChIP-seq のためのクロマチン免疫沈降法, 実験医学2013

    • Author(s)
      大川恭行, 小田原淳, 原田哲仁
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report
  • [Book] 実験医学2013

    • Author(s)
      大川 恭行, 原田 哲仁
    • Publisher
      羊土社
    • Related Report
      2013 Annual Research Report
  • [Book] 実験医学 Vol.31 No.42013

    • Author(s)
      大川恭行, 小田原淳, 原田哲仁
    • Publisher
      羊土社
    • Related Report
      2012 Annual Research Report
  • [Book] 骨格筋分化における高次クロマチン構造解析, 細胞工学2012

    • Author(s)
      原田哲仁, 大川恭行
    • Publisher
      学研メディカル秀潤社
    • Related Report
      2013 Final Research Report
  • [Book] An improved restriction enzyme accessibility assay for analyzing changes in chromatin structure in samples of limited cell number. Springer2012

    • Author(s)
      Ohkawa Y, Mallappa C, Vallaster CS, Imbalzano AN
    • Publisher
      Methods Mol Biol
    • Related Report
      2013 Final Research Report
  • [Book] Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays. Springer2012

    • Author(s)
      Ohkawa Y, Mallappa C, Vallaster CS, Imbalzano AN.
    • Publisher
      Methods Mol Biol
    • Related Report
      2013 Final Research Report
  • [Book] Methods Mol Biol.2012

    • Author(s)
      Ohkawa Y, Mallappa C, Vallaster CS, Imbalzano AN.
    • Publisher
      Springer社
    • Related Report
      2012 Annual Research Report
  • [Book] 細胞工学 Vol.31 No.82012

    • Author(s)
      原田哲仁, 大川恭行
    • Publisher
      秀潤社
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://chromatin.med.kyushu-u.ac.jp/

    • Related Report
      2013 Final Research Report
  • [Remarks] 九州大学医学研究院先端医療医学部門エピジェネティクス分野/大川研究室

    • Related Report
      2013 Final Research Report
  • [Remarks] エピジェネティクス分野 / 大川研究室 (九州大学 医学研究院 先端医療医学部門)

    • URL

      http://chromatin.med.kyushu-u.ac.jp/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 平成25年~29年度 新学術領域研究 「動的クロマチン構造と機能」

    • URL

      http://nucleosome.kyushu-u.ac.jp/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 九州大学 医学研究院 先端医療医学部門 エピジェネティクス分野 / 大川研究室

    • URL

      http://chromatin.med.kyushu-u.ac.jp/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://chromatin.med.kyushu-u.ac.jp/

    • Related Report
      2011 Annual Research Report

URL: 

Published: 2011-04-06   Modified: 2020-04-17  

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