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Analysis of the network constructed by dosage balanced genes in yeast

Research Project

Project/Area Number 23310140
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field System genome science
Research InstitutionOkayama University

Principal Investigator

MORIYA Hisao  岡山大学, その他部局等, 准教授 (60500808)

Co-Investigator(Kenkyū-buntansha) MAKINO Takashi  東北大学, 大学院・生命科学研究科, 准教授 (20443442)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,150,000 (Direct Cost: ¥15,500,000、Indirect Cost: ¥4,650,000)
Fiscal Year 2013: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2012: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2011: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Keywords遺伝子ネットワーク / タンパク質ネットワーク / 量感受性遺伝子 / 量的均衡遺伝子 / 酵母 / ゲノム / 過剰発現 / 遺伝子量不均衡
Research Abstract

Dosage balanced gene (DBG) is a gene whose expression is balanced against more than two genes, and the perturbation of the balance causes cellular dysfunction. Using a genetic method designated "genetic tug-of-war", we have been trying to identify "dosage sensitive genes" whose minor overexpression cause cellular dysfunction. In this study, we proceeded this analysis, and identified 115 dosage sensitive genes in the budding yeast genome. We further identified 13 dosage-balanced interactions. This study is the first example for the systematic identification of dosage sensitive genes in a organism's genome, and for the identification of multiple dosage balanced genes at a time.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (43 results)

All 2014 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (27 results) Remarks (7 results)

  • [Journal Article] Evaluation of the lower protein limit in the budding yeast Saccharomyces cerevisiae using TIPI-gTOW2014

    • Author(s)
      Sasabe M, Shintani S, Kintaka R, Kaizu K, Makanae K, Moriya H
    • Journal Title

      BMC Syst Biol

      Volume: 8(1) Issue: 1 Pages: 2-2

    • DOI

      10.1186/1752-0509-8-2

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Spiro-carbon formation by different chemistry involving pathway crosstalk.2013

    • Author(s)
      石川格靖, 他8名
    • Journal Title

      Nature Chemical Biology

      Volume: 9 Issue: 12 Pages: 818-825

    • DOI

      10.1038/nchembio.1366

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Relationships between Cell Cycle Regulator Gene Copy Numbers and Protein Expression Levels in Schizosaccharomyces pombe2013

    • Author(s)
      Chino A, Makanae K, Moriya H.
    • Journal Title

      PLoS One

      Volume: 8(9) Issue: 9 Pages: e73319-e73319

    • DOI

      10.1371/journal.pone.0073319

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Genome-Wide Activity Assessment of Terminator Regions in Saccharomyces cerevisiae Provides a "Terminatome″Toolbox2013

    • Author(s)
      Yamanishi M, Ito Y, Kintaka R, Imamura C, Katahira S, Ikeuchi A, Moriya H, Matsuyama T
    • Journal Title

      ACS Synth Biol

      Volume: 2 Issue: 6 Pages: 337-347

    • DOI

      10.1021/sb300116y

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Parallel Real-Time PCR on a Chip for Genetic Tug-of-War (gTOW) Method2013

    • Author(s)
      Naito T, Yatsuhashi A, Kaji N, Ando T, Sato K, Moriya H, Kitano H, Yasui T, Tokeshi M, Baba Y
    • Journal Title

      Anal Sci

      Volume: 29(3) Pages: 367-71

    • NAID

      10031165324

    • URL

      https://www.jstage.jst.go.jp/article/analsci/29/3/29_367/_article

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method2013

    • Author(s)
      Koji Makanae, Reiko Kintaka, Takashi Makino, Hiroaki Kitano and Hisao Moriya
    • Journal Title

      Genome Research

      Volume: 23 Issue: 2 Pages: 300-311

    • DOI

      10.1101/gr.146662.112

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Robustness analysis of cellular systems using the genetic tug-of-war method2012

    • Author(s)
      Moriya H, Makanae K, Watanabe K, Chino A, Shimizu-Yoshida Y
    • Journal Title

      Mol Biosyst

      Volume: 8(10) Issue: 10 Pages: 2513-22

    • DOI

      10.1039/c2mb25100k

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishing a New Methodology for Genome Mining and Biosynthesis of Polyketides and Peptides through Yeast Molecular Genetics2012

    • Author(s)
      石内勘一郎、佐藤道大, 他9名
    • Journal Title

      Chembiochem

      Volume: 13 Issue: 6 Pages: 846-854

    • DOI

      10.1002/cbic.201100798

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico2011

    • Author(s)
      Moriya H, Chino A, Kapuy O, Csikasz-Nagy A, Novak B
    • Journal Title

      Molecular Systems Biology

      Volume: 7 Issue: 1 Pages: 556-556

    • DOI

      10.1038/msb.2011.91

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] 酵母だから測れる(?),過剰発現のコピー数限界2013

    • Author(s)
      守屋央朗
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2013-12-03
    • Related Report
      2013 Final Research Report
  • [Presentation] TIPI-gTOW 法によるタンパク質発現の下限限定の試み2013

    • Author(s)
      雀部正毅, 進谷紗弓, 守屋央朗
    • Organizer
      酵母遺伝学フォーラム第46回研究報告会
    • Place of Presentation
      仙台市青葉区
    • Year and Date
      2013-09-08
    • Related Report
      2013 Final Research Report
  • [Presentation] 出芽酵母におけるmisfoldedGFP の過剰発現による細胞毒性の発揮メカニズムの解析2013

    • Author(s)
      蒔苗浩志, 守屋央朗
    • Organizer
      酵母遺伝学フォーラム第46回研究報告会
    • Place of Presentation
      仙台市青葉区
    • Year and Date
      2013-09-08
    • Related Report
      2013 Final Research Report
  • [Presentation] 酵母だから測れる(?)、過剰発現のコピー数限界2013

    • Author(s)
      守屋央朗
    • Organizer
      日本分子生物学会 第36回年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] 酵母の量感受性遺伝子の多コピーサプレッサーによる解析2013

    • Author(s)
      金高令子、守屋央朗
    • Organizer
      日本分子生物学会 第36回年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] ミトコンドリア関連の量感受性遺伝子(DSG)とPPH3 の遺伝的相互作用2012

    • Author(s)
      金高令子, 蒔苗浩司, 守屋央朗
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2012-12-12
    • Related Report
      2013 Final Research Report
  • [Presentation] タンパク質の過剰発現が引き起こす細胞毒性の定量2012

    • Author(s)
      蒔苗浩司, 守屋央朗
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2012-12-12
    • Related Report
      2013 Final Research Report
  • [Presentation] 出芽酵母がもつすべての遺伝子の限界発現量を測る2012

    • Author(s)
      蒔苗浩司, 金高令子, 牧野能士, 守屋央朗
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2012-12-12
    • Related Report
      2013 Final Research Report
  • [Presentation] 分裂酵母の細胞周期に存在するフィードバックの解明2012

    • Author(s)
      茅野文子, 守屋央朗
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2012-09-05
    • Related Report
      2013 Final Research Report
  • [Presentation] ミトコンドリア関連の量感受性遺伝子(DSG)とPPH3 の遺伝的相互作用2012

    • Author(s)
      金高令子, 蒔苗浩司, 守屋央朗
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2012-09-05
    • Related Report
      2013 Final Research Report
  • [Presentation] タンパク質の過剰に対して,細胞の各プロセスは異なった頑健性を持っている2012

    • Author(s)
      守屋央朗, 蒔苗浩司
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      京都府宇治市
    • Year and Date
      2012-09-04
    • Related Report
      2013 Final Research Report
  • [Presentation] Development of a method for measuring the lower limit of gene expression2012

    • Author(s)
      Masataka Sasabe, Sayumi Shintani, Koji Makanae, Hisao Moriya
    • Organizer
      2012 Yeast Genetics and Molecular Biology Meeting
    • Place of Presentation
      アメリカ,ニュージャージー州)
    • Year and Date
      2012-08-01
    • Related Report
      2013 Final Research Report
  • [Presentation] Identification of genes in balance with dosage sensitive genes2012

    • Author(s)
      Reiko Kintaka, Koji Makanae, Hisao Moriya
    • Organizer
      2012 Yeast Genetics and Molecular Biology Meeting
    • Place of Presentation
      アメリカ,ニュージャージー州
    • Year and Date
      2012-08-01
    • Related Report
      2013 Final Research Report
  • [Presentation] ミトコンドリア関連の量感受性遺伝子(DSG)とPPH3の遺伝的相互作用2012

    • Author(s)
      金高令子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2012 Annual Research Report
  • [Presentation] タンパク質の過剰発現が引き起こす細胞毒性の定量2012

    • Author(s)
      蒔苗浩司
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 出芽酵母がもつすべての遺伝子の限界発現量を測る2012

    • Author(s)
      守屋央朗
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2012 Annual Research Report
  • [Presentation] ミトコンドリア関連の量感受性遺伝子(DSG)とPPH3の遺伝的相互作用2012

    • Author(s)
      金高令子
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      京都府宇治市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Identification of genes in balance with dosage sensitive genes2012

    • Author(s)
      Reiko Kintaka
    • Organizer
      2012 Yeast Genetics and Molecular Biology Meeting
    • Place of Presentation
      アメリカ、ニュージャージー州
    • Related Report
      2012 Annual Research Report
  • [Presentation] Dosage sensitive geneと均衡関係にある遺伝子の同定2011

    • Author(s)
      金高令子、守屋央朗
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 遺伝子発現の下限測定法の開発2011

    • Author(s)
      進谷紗弓 ,蒔苗浩司, 守屋央朗
    • Organizer
      イーストワークショップ
    • Place of Presentation
      香川県さぬき市
    • Year and Date
      2011-11-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Dosage sensitive gene と均衡関係にある遺伝子の同定2011

    • Author(s)
      金高令子, 守屋央朗
    • Organizer
      イーストワークショップ
    • Place of Presentation
      香川県さぬき市
    • Year and Date
      2011-11-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Dosage sensitive geneと均衡関係にある遺伝子の同定2011

    • Author(s)
      金高令子、守屋央朗
    • Organizer
      イーストワークショップ
    • Place of Presentation
      香川県さぬき市
    • Year and Date
      2011-11-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] 出芽酵母の遺伝子量感受性遺伝子2011

    • Author(s)
      守屋央朗
    • Organizer
      第7回真菌分子細胞研究会
    • Place of Presentation
      香川県さぬき市(招待講演)
    • Year and Date
      2011-11-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] 酵母細胞システムのロバストネス解析2011

    • Author(s)
      守屋央朗
    • Organizer
      生物物理学会第49回年会
    • Place of Presentation
      姫路市書写
    • Year and Date
      2011-09-16
    • Related Report
      2013 Final Research Report
  • [Presentation] 酵母細胞システムのロバストネス解析2011

    • Author(s)
      守屋央朗
    • Organizer
      第49会日本生物物理学会年会
    • Place of Presentation
      兵庫県姫路市
    • Year and Date
      2011-09-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Dosage sensitive geneのパートナー分子の同定2011

    • Author(s)
      金高令子、守屋央朗
    • Organizer
      酵母遺伝学フォーラム第44回年会
    • Place of Presentation
      福岡県博多市
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Identification of dosage sensitive genes on the budding yeast genome2011

    • Author(s)
      守屋央朗
    • Organizer
      Young Researchers Conference on Evolutionary Genomics
    • Place of Presentation
      東京(招待講演)
    • Year and Date
      2011-08-01
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://tenure5.vbl.okayama-u.ac.jp/Hmlab/

    • Related Report
      2013 Final Research Report
  • [Remarks] 雑誌論文⑥のプレスリリースが,山陽新聞(2012.12.29),日本経済新聞(2013.1.7)に掲載された.マイナビニュース(2012.12.28)で紹介された.

    • Related Report
      2013 Final Research Report
  • [Remarks] 雑誌論文⑨のプレスリリースが,山陽新聞(2011.12.7)に掲載された.NHK 岡山放送(2011.12.8)のニュースで紹介された

    • Related Report
      2013 Final Research Report
  • [Remarks] 岡山大学異分野融合先端研究コア システム細胞学研究室

    • URL

      http://tenure5.vbl.okayama-u.ac.jp/HMlab/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 岡山大学守屋研究室

    • URL

      http://tenure5.vbl.okayama-u.ac.jp/HMlab/

    • Related Report
      2012 Annual Research Report
  • [Remarks] HM's webpage

    • URL

      http://tenure5.vbl.okayama-u.ac.jp/~hisaom/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://tenure5.vbl.okayama-u.ac.jp/HMlab/

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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