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Activation mechanisms of G-protein-coupled receptors based on the structural dynamics

Research Project

Project/Area Number 23370070
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

IMAMOTO Yasushi  京都大学, 理学(系)研究科(研究院), 准教授 (80263200)

Co-Investigator(Kenkyū-buntansha) SHICHIDA Yoshinori  京都大学, 大学院・理学研究科, 教授 (60127090)
YAMASHITA Takahiro  京都大学, 大学院・理学研究科, 助教 (50378535)
SAKO Yasushi  理化学研究所, 主任研究員 (20215700)
Co-Investigator(Renkei-kenkyūsha) OKA Toshihiko  静岡大学, 大学院・理学研究科, 講師 (60344389)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Fiscal Year 2013: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2011: ¥10,660,000 (Direct Cost: ¥8,200,000、Indirect Cost: ¥2,460,000)
Keywords平衡 / 一分子計測 / X線高角散乱 / 赤外分光 / 構造変化 / アゴニスト / 構成的活性変異 / ロドプシン / X線散乱 / X線散乱
Research Abstract

The activation process of G protein-coupled receptors was investigated based on the structural dynamics using rhodopsin. The effect of the ligand on the structure and equilibrium of the active state was analyzed by high-angle solution X-ray scattering, single-molecule fluorometry, and Fourier-transform infrared spectroscopy. Our results demonstrated that G protein-coupled receptors are in the equilibrium between active and inactive conformations, and the inverse-agonist and agonist bias the equilibrium toward inactive and active conformations, respectively, to regulate the activity.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (26 results)

All 2014 2013 2012 2011 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (11 results) (of which Invited: 3 results) Remarks (2 results)

  • [Journal Article] Mapping of the local environmental changes in proteins by cysteine scanning2014

    • Author(s)
      Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
    • Journal Title

      BIOPHYSICS

      Volume: 10 Issue: 0 Pages: 1-7

    • DOI

      10.2142/biophysics.10.1

    • NAID

      130003392785

    • ISSN
      1349-2942
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ligand-induced population shift leads to the activation of rhodopsin, a G-protein coupled receptor2014

    • Author(s)
      Maeda, R., Hiroshima, M., Yamashita, T., Wada, A., Nishimura, S., Sako, Y., Shichida, Y., and Imamoto, Y
    • Journal Title

      Biophys. J

      Volume: 106 (4) Issue: 4 Pages: 915-924

    • DOI

      10.1016/j.bpj.2014.01.020

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rod visual pigment optimizes active state to achieve efficient G protein activation as compared to cone visual pigments2014

    • Author(s)
      Kojima, K., Imamoto, Y., Maeda, R., Yamashita, T., and Shichida, Y
    • Journal Title

      J. Biol. Chem

      Volume: 289 (8) Issue: 8 Pages: 5061-5073

    • DOI

      10.1074/jbc.m113.508507

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Intramolecular interactions that induce helical rearrangement upon rhodopsin activation: Light-induced structural changes in metarhodopsin IIa probed by cysteine S-H stretching vibrations2014

    • Author(s)
      Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto*
    • Journal Title

      J. Biol. Chem

      Volume: 289 Issue: 20 Pages: 13792-13800

    • DOI

      10.1074/jbc.m113.527606

    • NAID

      120005741087

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of mammalian opn5 as a specialized UV-absorbing pigment by a single amino acid mutation2014

    • Author(s)
      Yamashita, T., Ono, K., Ohuchi, H., Yumoto, A., Gotoh, H., Tomonari, S., Sakai, K., Fujita, H., Imamoto, Y., Noji, S., Nakamura, K., and Shichida, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 7 Pages: 3991-4000

    • DOI

      10.1074/jbc.m113.514075

    • NAID

      120005690203

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficiencies of activation of transducin by cone and rod visual pigments2013

    • Author(s)
      Imamoto, Y., Seki, I., Yamashita, T., and Shichida, Y
    • Journal Title

      Biochemistry

      Volume: 52 (17) Issue: 17 Pages: 3010-3018

    • DOI

      10.1021/bi3015967

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast carbonyl motion of the photoactive yellow protein chromophore probed by femtosecond circular dichroism2013

    • Author(s)
      Mendonca, L., Hache, F., Changenet-Barret, P., Plaza, P., Chosrowjan, H., Taniguchi, S., and Imamoto, Y.
    • Journal Title

      J. Am. Chem. Soc. 135,

      Volume: 135 Issue: 39 Pages: 14637-14643

    • DOI

      10.1021/ja404503q

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast time-resolved pump-probe spectroscopy of PYP by a sub-8fs pulse laser at 400 nm2013

    • Author(s)
      Liu, J., Yabushita, A., Taniguchi, S., Chosrowjan, H., Imamoto, Y., Sueda, K., Miyanaga, N., and Kobayashi, T.
    • Journal Title

      J. Phys. Chem. B

      Volume: 117 Issue: 17 Pages: 4818-4826

    • DOI

      10.1021/jp4001016

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The C-Terminus of the G Protein α Subunit Controls the Affinity of Nucleotides2012

    • Author(s)
      Naoki Kimata, Takahiro Yamashita, Take Matsuyama, Yasushi Imamoto, Yoshinori Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 13 Pages: 2768-2774

    • DOI

      10.1021/bi201702d

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment2012

    • Author(s)
      K. Sato, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 21 Pages: 4300-8

    • DOI

      10.1021/bi3000885

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photochemical nature of parietopsin.2012

    • Author(s)
      K. Sakai, Y. Imamoto, C.Y. Su, H. Tsukamoto, T. Yamashita, A. Terakita, K.W. Yau and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 9 Pages: 1933-41

    • DOI

      10.1021/bi2018283

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photochemical properties of mammalian melanopsin.2012

    • Author(s)
      T. Matsuyama, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 27 Pages: 5454-62

    • DOI

      10.1021/bi3004999

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments2011

    • Author(s)
      Keita Sato, Takahiro Yamashita, Hideyo Ohuchi, Yoshinori
    • Journal Title

      Biochemistry

      Volume: 50 Issue: 48 Pages: 10484-10490

    • DOI

      10.1021/bi201212z

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] ロドプシン研究の故きを温ねて新しきを知る2013

    • Author(s)
      今元泰, 前田亮, 廣島通夫, 佐甲靖志, 七田芳則
    • Organizer
      「構造ダイナミクスからみたロドプシンの活性化機構」分子研研究会
    • Place of Presentation
      自然科学研究機構・岡崎コンファレンスセンター大会議室
    • Year and Date
      2013-11-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Characterization of visual pigments in membrane environment using nanodiscs2013

    • Author(s)
      Imamoto, Y., Kojima, K., Maeda, R., Oka, T., Yamashita, T., and Shichida, Y
    • Organizer
      The 6th Asia & Oceania Conference on Photobiology
    • Place of Presentation
      Novotel Sydney Central, Sydney, Australia
    • Year and Date
      2013-11-11
    • Related Report
      2013 Final Research Report
  • [Presentation] Lightinduced structural changes of rhodopsin probed by cysteine S-H stretching vibrations2012

    • Author(s)
      Imamoto, Y., Yamazaki, Y., Nagata, T., Terakita, A., Kandori, H., and Shichida, Y
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Monte Verità, Ascona, Switzerland
    • Year and Date
      2012-10-01
    • Related Report
      2013 Final Research Report
  • [Presentation] Light-induced structural changes of rhodopsin probed by cysteine S-H stretching vibrations2012

    • Author(s)
      Imamoto, Y.
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Ascona, Switzerland
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 膜タンパク質の構造変化を研究するための新しい実験ツール2011

    • Author(s)
      今元泰
    • Organizer
      「ロドプシン活性化の一分子計測」第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス
    • Year and Date
      2011-09-17
    • Related Report
      2013 Final Research Report
  • [Presentation] ロドプシン活性化の一分子計測2011

    • Author(s)
      今元泰
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(兵庫県)(招待講演)
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Activation mechanism of visual transduction studied by fluorescence spectroscopy2011

    • Author(s)
      Imamoto, Y
    • Organizer
      Symposium "Chemical Approaches to Photobiology" in 5th Asia and Oceania Conference for Photobiology
    • Place of Presentation
      Nara Prefectural New Public Hall, Nara, Japan
    • Year and Date
      2011-07-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Activation mechanism of visual transduction studied by fluorescence spectroscopy2011

    • Author(s)
      Imamoto, Y.
    • Organizer
      5th Asia and Oceania Conference for Photobiology
    • Place of Presentation
      Nara Prefectural New Public Hall(奈良県)(招待講演)
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Helical rearrangement of photoactivated rhodopsin probed by high-angle X-ray scattering

    • Author(s)
      Imamoto, Y., Oka, T., Kojima, K., Maeda, R., Shichida, Y.
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] Characterization of visual pigments in membrane environment using nanodiscs

    • Author(s)
      Imamoto, Y., Kojima, K., Maeda, R., Oka, T., Yamashita, T., and Shichida, Y.
    • Organizer
      The 6th Asia & Oceania Conference on Photobiology
    • Place of Presentation
      Novotel Sydney Central, Australia
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 構造ダイナミクスからみたロドプシンの活性化機構

    • Author(s)
      今元 泰、前田 亮、廣島通夫、佐甲靖志、七田芳則
    • Organizer
      分子研研究会「ロドプシン研究の故きを温ねて新しきを知る」
    • Place of Presentation
      岡崎コンファレンスセンター大会議室
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks]

    • URL

      http://photo1.biophys.kyoto-u.ac.jp/

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://photol.biophys.kyoto-u.ac.jp/

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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