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Extraction and application of structural and functional elements of proteins.

Research Project

Project/Area Number 23370074
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

KAMIKUBO Hironari  奈良先端科学技術大学院大学, 物質創成科学研究科, 准教授 (20311128)

Co-Investigator(Kenkyū-buntansha) KATAOKA Mikio  奈良先端科学技術大学院大学, 物質創成科学研究科, 教授 (30150254)
YAMAZAKI Yoichi  奈良先端科学技術大学院大学, 物質創成科学研究科, 助教 (40332770)
Project Period (FY) 2011-11-18 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2013: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Keywords蛋白質工学 / 分子設計 / フォールディング / 酵素
Research Abstract

Nowadays, artificially engineered proteins are utilized in various life science areas. In addition, engineered proteins are known to be one of promised candidates for next generation drugs. However, effective methods for rational design of artificial proteins have not been developed. Using comprehensive alanine insertion mutation analysis, we have revealed that regions of several subsequent amino acid residues in a protein, named as "Element", are responsible for the function and structure. In this work, we established a working hypothesis that those elements act as building blocks in the proteins, and verified it. In the result, by implanting the elements from a protein into another protein with a different function, we successfully modified the protein function as we wish. This success implies that the elements act as a kind of building-block to mediate a particular protein function, and will enable us to design an artificial protein rationally.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (91 results)

All 2014 2013 2012 2011 Other

All Journal Article (20 results) (of which Peer Reviewed: 18 results) Presentation (70 results) (of which Invited: 12 results) Remarks (1 results)

  • [Journal Article] Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin2014

    • Author(s)
      D. Novitasari, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Kataoka
    • Journal Title

      Advanced Materials Research

      Volume: 896 Pages: 85-88

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory2013

    • Author(s)
      Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 50-53

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] (1)H, (13)C, and (15)N resonance assignment of photoactive yellow protein2013

    • Author(s)
      Pool TJ, Oktaviani NA, Kamikubo H, Kataoka M, Mulder FA
    • Journal Title

      Biomol NMR Assign

      Volume: 7(1) Pages: 97-100

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Preferential domain orientation of HMGB2 determined by the weak intramolecular interactions mediated by the interdomain linker2013

    • Author(s)
      J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. U.-Tate, S. Tate
    • Journal Title

      Chem.Phys

      Volume: 419 Pages: 212

    • DOI

      10.1016/j.chemphys.2013.02.004

    • URL

      https://pure.teikyo.jp/en/publications/d5a2b53c-f986-4ac3-b994-d5a09681cf5f

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β -diketonate europium(III) chelate2013

    • Author(s)
      Junpei Yuasa
    • Journal Title

      Chem. Commn.

      Volume: 49 Issue: 41 Pages: 4604-4606

    • DOI

      10.1039/c3cc40331a

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion2013

    • Author(s)
      Inoue N, Hamada D, Kamikubo H, Hirata K, Kataoka M, Yamamoto M, Ikawa M, Okabe M, Hagihara Y
    • Journal Title

      Development

      Volume: 140(15) Issue: 15 Pages: 3221-3229

    • DOI

      10.1242/dev.094854

    • NAID

      120006957398

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection2013

    • Author(s)
      Mitsuhide Hamaguchi
    • Journal Title

      PLoS One

      Volume: 8 Issue: 8 Pages: 71618-71618

    • DOI

      10.1371/journal.pone.0071618

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Journal Title

      Advanced Materials Reserch

      Volume: 896 Pages: 85-88

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane2013

    • Author(s)
      Woojung Chung
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 135 Pages: 2374-2383

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 結晶構造解析と溶液散乱測定から見た光センサー蛋白質の局所構造と全体構造2013

    • Author(s)
      上久保裕生
    • Journal Title

      日本結晶学会誌

      Volume: 55 Pages: 52-57

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 働いているタンパク質の構造を実時間で見た!-次世代構造生物科学への期待2013

    • Author(s)
      上久保裕生
    • Journal Title

      化学

      Volume: 68 Pages: 74-75

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography2012

    • Author(s)
      Schotte F, Cho HS, Kaila VR, Kamikubo H, Dashdorj N, Henry ER, Graber TJ, Henning R, Wulff M, Hummer G, Kataoka M, Anfinrud PA
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 109(47) Pages: 19256-61

    • NAID

      120005716810

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy2012

    • Author(s)
      Oktaviani NA, Pool TJ, Kamikubo H, Slager J, Scheek RM, Kataoka M, Mulder FA
    • Journal Title

      Biophys J. 2012 Feb

      Volume: 8 Pages: 579-86

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory2012

    • Author(s)
      Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 50-53

    • DOI

      10.1016/j.chemphys.2012.11.022

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for Arf6–MKLP1 complex formation on the Flemming body responsible for cytokinesis2012

    • Author(s)
      Hisayoshi Makyio
    • Journal Title

      EMBO J.

      Volume: 31 Pages: 2590-2603

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography2012

    • Author(s)
      Friedrich Schotte
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 109 Pages: 19256-19261

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Maintenance of the secondary structure of horse cytochrome c during the conversion process of monomers to oligomers by addition of ethanol2012

    • Author(s)
      Shun Hirota
    • Journal Title

      J. Biochem.

      Volume: 152 Pages: 521-529

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Changes in the hydrogen-bond network around the chromophore of photoactive yellow protein in the ground and excited states2011

    • Author(s)
      Mizuno M, Kamikubo H, Kataoka M, Mizutani Y
    • Journal Title

      J Phys Chem B

      Volume: 115(29) Pages: 9306-10

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Changes in the hydrogen-bond network around the chromophore of photoactive yellow protein in the ground and excited states2011

    • Author(s)
      Misao Mizuno
    • Journal Title

      J. Phys. Chem. B

      Volume: 115 Pages: 9306-9310

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy2011

    • Author(s)
      Nur Alia Oktaviani
    • Journal Title

      Biophys. J.

      Volume: 102 Pages: 579-586

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2014

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Interaction sites analysis for the photoactive yellow protein of Rhodobacter capsulatus2014

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local disordered structure of staphylococcal nuclease studied by tryptophan triplet state lifetime measurement2014

    • Author(s)
      Mariko Yamaguchi
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Loop dynamics of staphylococcal nuclease in microsecond timescale2014

    • Author(s)
      Takahiro Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local flexibility around tryptophan140 and its relationship to non-local interaction in disordered staphylococcal nuclease2014

    • Author(s)
      Toshiyuki Minemura
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Extraction of function elements from green fluorescent protein2014

    • Author(s)
      Toshio Morimoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation state of R52 at the pypm intermediate state2014

    • Author(s)
      Masayoshi Noji
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray crystal structure analysis of the Photoactive Yellow Protein of2014

    • Author(s)
      Hiroshi Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of Equilibrium of intermediate states of PYP by use of chimera proteins2014

    • Author(s)
      Yoshiaki Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Statistical characteristics of unfolded staphylococcal nuclease studied by FRET analysis2014

    • Author(s)
      Emi Ohta
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of functional elements transplanted into the artificial enzyme2014

    • Author(s)
      Mai Arakawa
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 溶液散乱を用いた多成分平衡系における構造解析2014

    • Author(s)
      上久保裕生
    • Organizer
      Spring-8ワークショップ「Spring-8とユーザーのさらなる連携をめざして」
    • Place of Presentation
      理化学研究所播磨事業所、兵庫県佐用町
    • Related Report
      2013 Annual Research Report
  • [Presentation] Functional modification of a protein by using element implantaion2013

    • Author(s)
      H. Kamikubo
    • Organizer
      Sixth Korea-Japan Seminars on Biomolecular Sciences : Experiments and Simulations
    • Place of Presentation
      Okazaki, Japan
    • Related Report
      2013 Final Research Report
  • [Presentation] The mechanism of induced folding of Staphylococcal nuclease2013

    • Author(s)
      M. Kataoka
    • Organizer
      Telluride Conference on Protein Dynamics 2013
    • Place of Presentation
      Telluride, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] Is tertiary structure required for a specific function?2013

    • Author(s)
      M. Kataoka
    • Organizer
      8th Asian Biophysics Association Symposium
    • Place of Presentation
      Jeju, Korea
    • Related Report
      2013 Final Research Report
  • [Presentation] Photoactive Yellow Protein中の低障壁水素結合と近傍アルギニンの解離性2013

    • Author(s)
      上久保裕生
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館、鳥取県鳥取市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 黄色ブドウ球菌由来核酸分解酵素におけるループの揺らぎと機能の関係2013

    • Author(s)
      芝るみ
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館、鳥取県鳥取市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X線溶液散乱法を用いたタンパク質構造の解析2013

    • Author(s)
      上久保裕生
    • Organizer
      分子・物質合成プラットフォーム技術研修会-先端施設の利用機会と高度な技術支援の提供-
    • Place of Presentation
      ホテル京阪 京都、京都府京都市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Excited-state proton transfer in fluorescent Photoactive Yellow Protein containing 7-hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Organizer
      International Conference on Advanced Materials Science and Technology 2013
    • Place of Presentation
      University Gadjah Mada, Yogyakarta, Indonesia
    • Related Report
      2013 Annual Research Report
  • [Presentation] トリプトファン三重項寿命を用いたStaphylococcal nucleaseの主鎖の運動性評価2013

    • Author(s)
      松本昇紘
    • Organizer
      日本物理学会 2013年秋季大会
    • Place of Presentation
      徳島大学、常三島キャンパス、徳島県徳島市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Time-resolved Laue crystallography of photoactive yellow protein with 150psec time resolution2013

    • Author(s)
      Mikio Kataoka
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Domain-Swapped Oligomerization and Molten Globule State of Cytochrome c2013

    • Author(s)
      Megha Deshpande
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity2013

    • Author(s)
      Rumi Shiba
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Exited State Proton Transfer of Fluorescent Photoactive Yellow Protein Reconstituted with Hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2013

    • Author(s)
      Kento Yonezawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray Solution Scattering Studies of PYP-Phytochrome Related Protein2013

    • Author(s)
      Keito Yoshida
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of unfolded structure of Staphylococcal nuclease mutants by using FRET2013

    • Author(s)
      Emi Ohta
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Main-chain dynamics of staphylococcal nuclease in microsecond timescale2013

    • Author(s)
      Takahiro Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local flexibility of denatured structure and its relationship to non-local interaction in staphylococcal nuclease2013

    • Author(s)
      Toshiyuki Minemura
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of functional elements transplanted into the artificial enzyme2013

    • Author(s)
      Mai Arakawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray crystal structure analysis of the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Hiroshi Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of equilibrium of intermediate states of PYP by use of chimera proteins2013

    • Author(s)
      Yoshiaki Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation state of R52 at the PYPM intermediate state2013

    • Author(s)
      Masayoshi Noji
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Functional modification of a protein by using element implantation2013

    • Author(s)
      Hironari Kamikubo
    • Organizer
      Sixth Korea-Japan Seminars on Biomdecular Sciences; Experiments and Simulations
    • Place of Presentation
      岡崎コンファレンスセンタ-、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 弱い相互作用で関連づけられたタンパク質分子集団の構造学的解析

    • Author(s)
      上久保裕生
    • Organizer
      国際高等研究所研究プロジェクト「分子基盤に基づく生体機能への揺らぎとダイナミックネットワークの解明」2013年度第1回研究会プログラム
    • Place of Presentation
      国際高等研究所、京都府木津川市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 光センサー蛋白質の局所状態変化と全体構造変化

    • Author(s)
      上久保裕生
    • Organizer
      第3回CIMoSセミナー
    • Place of Presentation
      分子科学研究所協奏分子システム研究センター、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 光センサー蛋白質からみた階層間の連続性

    • Author(s)
      上久保裕生
    • Organizer
      国際高等研究所研究プロジェクト「分子基盤に基づく生体機能への揺らぎとダイナミックネットワークの解明」2013年度第2回研究会プログラム
    • Place of Presentation
      国際高等研究所、京都府木津川市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 折り畳み機構を踏まえた蛋白質分子設計方の開発

    • Author(s)
      上久保裕生
    • Organizer
      NAIST未来開発コロキウム-明日をつくる分子・人材ネットワーク
    • Place of Presentation
      奈良先端科学技術大学院大学 物質創成科学研究科、奈良県生駒市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 機能を生み出す単位生体分子集団

    • Author(s)
      上久保裕生
    • Organizer
      生命システムにおける動的秩序形成と高次機能発現 第1回公開シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンタ-、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Extraction of Function Elements from Green Fluorescent Protein

    • Author(s)
      Toshio Morimoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Element-based molecular design can reproduce an artificial protein with an expected enzymatic activity

    • Author(s)
      上久保裕生
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 網羅的アラニン挿入変異解析法を用いたジヒドロ葉酸還元酵素の機能発現及び構造形成領域の抽出

    • Author(s)
      芝るみ
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity

    • Author(s)
      Rumi Shiba
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Amyloid fibril inhibition mechanism of human calcitonin

    • Author(s)
      Naoharu Kouduki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] The role of hydrogen bonding network around the chromophore for the interaction of Rc-PYP

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Effect of N-terminal region to the structure formation of PYP

    • Author(s)
      Mitsuhiro Sakonji
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus with chimeric proteins

    • Author(s)
      Mayu Shimada
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of hydrogen bonds around chromophore in Photoactive Yellow Protein studied by OH-deficient cinnamic acid

    • Author(s)
      Masatoshi Narumi
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Photoreaction of PYP domain regulates the structural change during the photoreaction of phytochrome domain of Ppr

    • Author(s)
      Keito Yoshida
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Protonation state of arginine 52 near the low barrier hydrogen bond in photoactive yellow protein

    • Author(s)
      Kento Yonezawa
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      愛知県名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity

    • Author(s)
      Rumi Shiba
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Fluorescence properties of chromophore fluorescence properties of chromophore modified photoactive yellow protein

    • Author(s)
      Dian Novitasari
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] The comparison of fluorescent spectra between wild type staphylococcal nuclease and the mutants based on FRET

    • Author(s)
      Emi Ohta
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Amyloid fibril inhibition mechanism of human calcitonin

    • Author(s)
      Naoharu Kohzuki
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Extraction of the structure elements from PYP

    • Author(s)
      Mitsuhiro Sakonji
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus with chimeric proteins

    • Author(s)
      Mayu Shimada
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Roles of hydrogen bonds around chromophore in Photoactive Yellow Protein studied by OH-deficient cinnamic acid

    • Author(s)
      Masatoshi Narumi
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structural analysis of PYP-Phytochrome Related Protein during its photoreaction by using small angle X-ray scattering

    • Author(s)
      Keito Yoshida
    • Organizer
      The 6th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都府京都市
    • Related Report
      2012 Annual Research Report
  • [Presentation] イェロープロテインの光反応中の構造変化を見る

    • Author(s)
      片岡幹雄
    • Organizer
      日本物理学会第68回年次大会
    • Place of Presentation
      広島県東広島市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 変性剤がスタフィロコッカルヌクレアーゼの変性構造に与える影響

    • Author(s)
      山口真理子
    • Organizer
      日本物理学会第68回年次大会
    • Place of Presentation
      広島県東広島市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 中性子小角中角散乱で観測した水溶液中のStaphylococcal Nucleaseの構造

    • Author(s)
      遠藤仁
    • Organizer
      日本物理学会第68回年次大会
    • Place of Presentation
      広島県東広島市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Physicochemical properties of low barrier hydrogen bonds

    • Author(s)
      上久保裕生
    • Organizer
      特定領域研究「分子高次系機能解明のための分子科学」第5回国際公開シンポジウム
    • Place of Presentation
      北海道札幌市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] 蛋白質中の低障壁水素結合と高次構造転移

    • Author(s)
      上久保裕生
    • Organizer
      九重分光関連夏期セミナー2011
    • Place of Presentation
      大分県玖珠郡九重町
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] 構造生物学における放射光X線溶液散乱

    • Author(s)
      上久保裕生
    • Organizer
      合同PF研究会「PFにおけるマイクロビームを利用した XAFS, XRF, SAXS実験の展望」
    • Place of Presentation
      茨城県つくば市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] 活性部位近傍に存在する水素結合と高次構造転移

    • Author(s)
      上久保裕生
    • Organizer
      特定領域研究「高次系分子科学」第12回ミニ公開シンポジウム「光受容蛋白質」
    • Place of Presentation
      愛知県蒲郡市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] The roles of the low barrier hydrogen bond involved in Photoactive Yellow Protein

    • Author(s)
      上久保裕生
    • Organizer
      17th International Biophysics Congress (IUPAB)
    • Place of Presentation
      Beijing, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] Physicochemical properties of low barrier hydrogen bonds involved in proteins

    • Author(s)
      上久保裕生
    • Organizer
      2011 GIST-NAIST-NCTU Joint Symposium on Advanced Materials
    • Place of Presentation
      Gwangju, Korea
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] Physicochemical properties of low barrier hydrogen bonds involved in Photoactive Yellow Protein

    • Author(s)
      上久保裕生
    • Organizer
      1st Asia-Oceania Conference on Neutron Scattering
    • Place of Presentation
      茨城県つくば市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] The Roles of the Low Barrier Hydrogen Bond Involved in the Light Sensor Protein, Photoactive Yellow Protein

    • Author(s)
      上久保裕生
    • Organizer
      The 5th International Symposium on Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      奈良県奈良市
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://mswebs.naist.jp/LABs/kataoka/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2013-05-15   Modified: 2019-07-29  

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