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Dynamics of human genome DNA in living cells revealed by nucleosome imaging

Research Project

Project/Area Number 23370078
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNational Institute of Genetics

Principal Investigator

MAESHIMA Kazuhiro  国立遺伝学研究所, 構造遺伝学研究センター, 教授 (00392118)

Project Period (FY) 2011-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥20,150,000 (Direct Cost: ¥15,500,000、Indirect Cost: ¥4,650,000)
Fiscal Year 2013: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2012: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Fiscal Year 2011: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Keywordsゲノム / 遺伝学 / 核酸 / 生物物理
Outline of Final Research Achievements

Genome information, which is three-dimensionally organized within cells as chromatin, is searched and read out by various proteins for diverse cell functions. Although how the protein factors find their targets remains unclear, the dynamic nature of chromatin is likely crucial. To pursue this dynamics, we investigated the movement of each nucleosome in the chromatin. It had been technically challenging to image single nucleosome, because a single cell has numerous nucleosomes (≈3 x 107). To fluorescently label a small number of nucleosomes, we fused PA-GFP (PhotoActivatable-GFP) to histone H4, and stably expressed the PA-GFP-H4 in the cells. From our analysis of the single nucleosome movement, we found a local fluctuation of individual nucleosomes. This local dynamic movement would be a basis of various genome events.

Report

(4 results)
  • 2014 Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (38 results)

All 2014 2013 2012 2011

All Journal Article (18 results) (of which Peer Reviewed: 18 results,  Acknowledgement Compliant: 4 results,  Open Access: 3 results) Presentation (20 results) (of which Invited: 14 results)

  • [Journal Article] Chromatin as dynamic 10-nm fibers.2014

    • Author(s)
      Kazuhiro Maeshima, Ryosuke Imai, Sachiko Tamura, Tadasu Nozaki.
    • Journal Title

      Chromosoma

      Volume: 123 Issue: 3 Pages: 225-237

    • DOI

      10.1007/s00412-014-0460-2

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Single Nucleosome Imaging in Living Human Cells2014

    • Author(s)
      Tadasu Nozaki, Ryosuke Imai, Sachiko Tamura, Kazuhiro Maeshima.
    • Journal Title

      CYTOLOGIA

      Volume: 79 Issue: 1 Pages: 1-1

    • DOI

      10.1508/cytologia.79.1

    • NAID

      130004448261

    • ISSN
      0011-4545, 1348-7019
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 「定量的1分子蛍光イメージングと計算機シミュレーションを用いたゲノムダイナミクスの解析」2014

    • Author(s)
      今井亮輔,海津一成,野崎 慎,前島一博,高橋恒一
    • Journal Title

      生化学

      Volume: 86 Pages: 192-200

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] クロマチンの凝縮が生み出す放射線耐性2014

    • Author(s)
      高田英昭、前島一博
    • Journal Title

      日本アイソトープ協会広報誌 「Isotope News」

      Volume: 3 Pages: 2-6

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Lamin B2 prevents chromosome instability by ensuring proper mitotic chromosome segregation2013

    • Author(s)
      Kuga, T., Nie, H., Kazami, T., Satoh, M., Matsushita, K., Nomura, F., Maeshima, K., Nakayama, Y., Tomonaga, T.
    • Journal Title

      Oncogenesis

      Volume: 3 Issue: 3 Pages: e94-e94

    • DOI

      10.1038/oncsis.2014.6

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Evaluation of Tandem Hairpin Pyrrole-Imidazole Polyamides Recognizing Human Telomeres.2013

    • Author(s)
      Yusuke Kawamoto, Toshikazu Bando, Fukumi Kamada, Yue Li, Kaori Hashiya, Kazuhiro Maeshima, and Hiroshi Sugiyama
    • Journal Title

      Journal of the American Chemical Society

      Volume: 135 Issue: 44 Pages: 16468-77

    • DOI

      10.1021/ja406737n

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chromatin compaction protects genomic DNA from radiation damage.2013

    • Author(s)
      Takata, H., Hanafusa, T., Mori, T., Shimura, M., Iida,Y., Ishikawa, K., Yoshikawa, K., Yoshikawa, Y., Maeshima, K.
    • Journal Title

      PLOS ONE

      Volume: 8 Issue: 10 Pages: e75622-e75622

    • DOI

      10.1371/journal.pone.0075622

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Flexible and dynamic nucleosome fiber in living mammalian cells.2013

    • Author(s)
      Nozaki T, Kaizu K, Pack CG, Tamura S, Tani T, Hihara S, Nagai T, Takahashi K, Maeshima K.
    • Journal Title

      Nucleus

      Volume: 5 Issue: 5 Pages: 349-356

    • DOI

      10.4161/nucl.26053

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chromosome engineering allows the efficient isolation of vertebrate neocentromeres2013

    • Author(s)
      Shang WH, Hori T, Martins NM, Toyoda A, Misu S, Monma N, Hiratani I, Maeshima K, Ikeo K, Fujiyama A, Kimura H, Earnshaw WC, and Fukagawa T
    • Journal Title

      Dev Cell

      Volume: 24 Issue: 6 Pages: 635-648

    • DOI

      10.1016/j.devcel.2013.02.009

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 30nmクロマチン線維は存在しない!2013

    • Author(s)
      野崎慎
    • Journal Title

      化学と生物

      Volume: 51 Pages: 177-182

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ヒトゲノムDNAの不規則で柔軟な収納原理2013

    • Author(s)
      前島一博
    • Journal Title

      生物物理

      Volume: 53 Pages: 4-10

    • NAID

      10031139018

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The organisation of genomic DNA in mitotic chromosomes: a novel view2013

    • Author(s)
      H. Takata
    • Journal Title

      Plant Genome Diversity

      Volume: 2 Pages: 33-34

    • DOI

      10.1007/978-3-7091-1160-4_3

    • ISBN
      9783709111598, 9783709111604
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Local nucleosome dynamics facilitate chromatin accessibility in living Mammalian cells.2012

    • Author(s)
      Hihara S.
    • Journal Title

      Cell Rep.

      Volume: 2(6) Issue: 6 Pages: 1645-1656

    • DOI

      10.1016/j.celrep.2012.11.008

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chromosomes without a 30-nm chromatin fiber2012

    • Author(s)
      Yasumasa Joti、Takaaki Hikima、Yoshinori Nishino、Fukumi Kamada、Saera Hihara、Hideaki Takata、Tetsuya Ishikawa、Kazuhiro Maeshima
    • Journal Title

      Nucleus

      Volume: 3巻 Issue: 5 Pages: 404-410

    • DOI

      10.4161/nucl.21222

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure2012

    • Author(s)
      Yoshinori Nishino、Mikhail Eltsov、Yasumasa Joti、Kazuki Ito、Hideaki Takata、Yukio Takahashi、Saera Hihara、Achilleas S Frangakis、Naoko Imamoto、Tetsuya Ishikawa、Kazuhiro Maeshima
    • Journal Title

      The EMBO Journal

      Volume: 31巻 Issue: 7 Pages: 1644-1653

    • DOI

      10.1038/emboj.2012.35

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The integrator complex is required for the integrity of Cajal bodies2012

    • Author(s)
      H.Takata
    • Journal Title

      Journal of Cell Science

      Volume: 125 Issue: 1 Pages: 166-175

    • DOI

      10.1242/jcs.090837

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Size, Nuclear pore number, and Cell Cycle2011

    • Author(s)
      K.Maeshima
    • Journal Title

      Nucleus

      Volume: 2 Issue: 9 Pages: 113-118

    • DOI

      10.1038/nsmb.1878

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Irregular folding of nucleosomes in the cell (Commentary)2011

    • Author(s)
      Takata, H.
    • Journal Title

      Physics of Life Reviews

      Volume: 8 Issue: 1 Pages: 51-52

    • DOI

      10.1016/j.plrev.2011.01.005

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞のなかでゆらぐクロマチン2014

    • Author(s)
      前島一博
    • Organizer
      第66回日本細胞生物学会大会シンポジウム
    • Place of Presentation
      奈良県新公会堂, 奈良
    • Year and Date
      2014-12-06
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Chromatin structure and dynamics in live mammalian cells2014

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      2nd International Symposium of the Mathematics on Chromatin Live Dynamics
    • Place of Presentation
      Hiroshima University, Hiroshima,
    • Year and Date
      2014-03-10 – 2014-03-11
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Chromatin behavior in live mammalian cells2014

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      The 17th SANKEN International Symposium 2014
    • Place of Presentation
      Osaka University, Osaka
    • Year and Date
      2014-01-21 – 2014-01-22
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞のなかでゆらぐクロマチン2013

    • Author(s)
      前島一博
    • Organizer
      第1回 新学術領域「植物環境感覚」「少数性生物学」ジョイントシンポシウム
    • Place of Presentation
      大阪大学中之島センター, 大阪
    • Year and Date
      2013-12-17
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞のなかでゆらぐクロマチン2013

    • Author(s)
      前島一博
    • Organizer
      第36回日本分子生物学会年会 ワークショップ オーガナイザー・講演「遺伝子発現のゆらぎ・学習の動作原理を測る・導く」
    • Place of Presentation
      神戸ポートピアホテル, 神戸
    • Year and Date
      2013-12-04
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] クロマチン凝縮による放射線耐性2013

    • Author(s)
      髙田英昭、森利明、志村まり、石川顕一、吉川祐子、前島一博
    • Organizer
      第31回染色体ワークショップ・第12回核ダイナミクス研究会
    • Place of Presentation
      ホテルおかだ, 箱根
    • Year and Date
      2013-11-25
    • Related Report
      2013 Annual Research Report
  • [Presentation] Chromatin Structure and Dynamics in Living Mammalian Cells2013

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Workshop on "modeling of biomolecular systems in cellular environments
    • Place of Presentation
      Kyoto University, Kyoto,
    • Year and Date
      2013-10-31
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] How is nucleosome fiber organized in the cell?2013

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      第51回日本生物物理学会シンポジウム
    • Place of Presentation
      国立京都国際会館, 京都
    • Year and Date
      2013-10-29
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞のなかの「ゆらぐ」クロマチン2013

    • Author(s)
      前島一博、野崎慎
    • Organizer
      第65回日本細胞生物学会 シンポジウム「少数要素の分子反応的視点から細胞生物学的現象を理解する試み」
    • Place of Presentation
      ウインクあいち(愛知県産業労働センター), 名古屋
    • Year and Date
      2013-06-20
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Flexible and dynamic nucleosome fiber in living mammalian cells2013

    • Author(s)
      Kazuhiro Maeshima, Tadasu Nozaki, Tamomi Tani, Sachiko Tamura, Saera Hihara, Takeharu Nagai,
    • Organizer
      Workshop on the 4D Nucleome: Functional Nuclear Organization in Space and Time,
    • Place of Presentation
      Mainz, Germany
    • Year and Date
      2013-06-12 – 2013-06-15
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞のなかの「ゆらぐ」クロマチン2013

    • Author(s)
      前島一博
    • Organizer
      日本顕微鏡学会第69回学術講演会 シンポジウム「最先端バイオイメージングによる生命システムの動作原理解明にむけて」
    • Place of Presentation
      ホテル阪急エキスポパーク, 大阪
    • Year and Date
      2013-05-20 – 2013-05-22
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] How is a long strand of DNA organized in the cells?2012

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Lorentz Center Workshop “Genome Mechanics at the Nuclear Scale”
    • Place of Presentation
      Leiden, Netherlands
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Human genome organization and dynamics.2012

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Paradigm Innovation in Biology
    • Place of Presentation
      Academia Sinica ,Taipei,Taiwan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Human genome organization and dynamics2012

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      第50 回日本生物物理学会年会 シンポジウム
    • Place of Presentation
      名古屋
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 分裂期染色体におけるDNAの収納2012

    • Author(s)
      前島一博
    • Organizer
      日本人類遺伝学会 第19回臨床細胞遺伝学セミナー
    • Place of Presentation
      東京慈恵会医科大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 生きた細胞の動的クロマチン構造2011

    • Author(s)
      日原さえら
    • Organizer
      第1回細胞環境の測定とモデリングワークショップ(第4回JSBi応用システムバイオロジー研究会)
    • Place of Presentation
      神戸(招待講演)
    • Year and Date
      2011-11-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] How is a Long Strand of DNA Compacted into a Chromosome?2011

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Albany 2011 : 17^<th> Conversation
    • Place of Presentation
      Albany, SUNY, NY, USA(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Mitotic chromosome structure : irregular folding of nucleosome fibers without the 30-nm chromatin fiber2011

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Gordon Research Conference : Chromosome Dynamics
    • Place of Presentation
      Mount Snow Resort, VT, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] How can we know the chromatin environment in living cells?-Structural analysis of mitotic chromosomes in living cells-2011

    • Author(s)
      Saera Hihara
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Related Report
      2011 Annual Research Report
  • [Presentation] How is a long strand of genomic DNA organized into chromosome?2011

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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