• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Molecular basis for the maintenance of envelope integrity in Selenomonas ruminantium: Controlled mechanism of cadaverine biosynthesis which covalently links to the peptidoglycan

Research Project

Project/Area Number 23380046
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionShokei Gakuin College (2013)
Tohoku University (2012)
Yamagata University (2011)

Principal Investigator

KAMIO Yoshiyuki  尚絅学院大学, 総合人間科学部, 名誉教授 (00109175)

Co-Investigator(Kenkyū-buntansha) TANAKA Isao  北海道大学, 大学院・先端科学研究科, 特任教授 (70093052)
KANEKO Jun  東北大学, 大学院・農学研究科, 准教授 (30221188)
Co-Investigator(Renkei-kenkyūsha) TAKATSUKA Yumiko  山形大学, 大学院・理工学研究科, 助教 (70570810)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2013: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2011: ¥13,910,000 (Direct Cost: ¥10,700,000、Indirect Cost: ¥3,210,000)
Keywordsバクテリアアンチザイム / リボソーム蛋白質L-10 / L10遺伝子 / ポリアミン生合成制御機構 / ペプチドグリカン結合型ポリアミン / ClpXP protease / ポリアミン合成制御 / リジンオルニチン脱炭酸酵素 / アンチザイム / Clp型セリンプロテアーゼ / カダベリン / リジン脱炭酸酵素 / ClpPプロテアーゼ / ClpX / バクテリアアンチザイム P22 / リボソーム蛋白質L10 / Selenomonas ruminantium / バクテリアアンチザイムP22 / C1pPプロテアーゼ / C1pX / ATP依存性セリンプロテアーゼ
Research Abstract

Selenomonas ruminantium has cadaverine(Cad),which links covalently to the peptidoglycan (PG) for the cell devision.In this bacterium,Cad is synthesized constitutively from L-lysine by lysine/ornithine decarboxylase (LDC/ODC) and transferred to PG. Here,we found that (1) LDC/ODC was degraded at an early stationary phase by ATP dependent ClpXP.This degradation requires a ribosomal protein L10 which is induced into cytoplasm by putrescine in the cells. The induced L10 has similar biochemical and biophysical characteristics to those of an antizyme (AZ),which have been reported only in mammalian cells.(2) PG-bound Cad mediates an interaction between PG and the periplasm-exposed S-layer homologous domain of Mep45, a major outer membrane (OM) protein of this bacterium, thereby forms the structural linkage between the PG and OM.(3)The gene of lipid intermediate:diamine transferase (Ldt) for cadaverine-adding reaction into the lipid intermediate was cloned and the gene product was purified.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (40 results)

All 2014 2013 2012 2011 Other

All Journal Article (21 results) (of which Peer Reviewed: 12 results) Presentation (17 results) (of which Invited: 7 results) Book (2 results)

  • [Journal Article] Polyamine oxidase 7 is a terminal catabolism-type enzyme in Oryza sativa and is specifically expressed in anthers.2014

    • Author(s)
      Liu T, Kim DW, Niitsu M, Maeda S, Watanabe S, Kamio Y, Berberich T, Kusano T
    • Journal Title

      Plant Cell Physiology

      Volume: 55 Issue: 6 Pages: 1110-1122

    • DOI

      10.1093/pcp/pcu047

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preliminary X-ray crystallographic study of staphylococcal α-haemolysin monomer2013

    • Author(s)
      T . Sugawara, D. Y amashita, Y . T anaka, J. Kaneko, Y . Kamio, I. T anaka & M.Y ao
    • Journal Title

      Acta Cryst

      Volume: F69 Pages: 868-870

    • Related Report
      2013 Final Research Report
  • [Journal Article] Molecular basis for the maintenance of envelope integrity in Selenomona s r umina ntium : Cadaverine biosynthesis and covalent modification into the peptidoglycan play a major role2013

    • Author(s)
      S. Kojima & Y . Kamio
    • Journal Title

      J . Nutr. Sci. Vitaminol

      Volume: 58 Pages: 153-160

    • Related Report
      2013 Final Research Report
  • [Journal Article] Preliminary X-ray crystallographic study of staphylococcal α-haemolysin monomer2013

    • Author(s)
      Takaki Sugawara, Daichi Yamashita, Yoshikazu Tanaka, Jun Kaneko, Yoshiyuki Kamio, Isao Tanaka and Min Yao
    • Journal Title

      Acta Crystallographica

      Volume: F69 Issue: 8 Pages: 868-870

    • DOI

      10.1107/s174430911301693x

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] AxyR, an AraC family transcriptional activator of the xylanase 3 gene requires xyloolygosaccharides as a cofactor for DNA binding in Pa eniba cillus strain W-612012

    • Author(s)
      M. Fukuda, S. Y oshida, H. Itoh, S. Watanabe, Y . Itoh, Y . Kamio, & J. Kaneko
    • Journal Title

      Biosci. Biotechnol. Biochem

      Volume: 78 Pages: 1051-1054

    • Related Report
      2013 Final Research Report
  • [Journal Article] 偏性嫌気性細菌Selenomonas ruminantium の表層膜安定機構 -細胞壁結合型カダベリンの分子機能およびその合成・制御系-2012

    • Author(s)
      児島征司, 神尾好是
    • Journal Title

      ビタミン

      Volume: 86 Pages: 1-12

    • Related Report
      2013 Final Research Report
  • [Journal Article] Molecular basis for the maintenance of envelope integrity in Selenomonas ruminantium;Cadaverine biosynthesis and covalent modification into the peptidoglycan play a major role.2012

    • Author(s)
      Kojima, S., Kamio, Y.
    • Journal Title

      J. Nutr. Sci., Vitaminol. (Tokyo)

      Volume: 58 Pages: 153-156

    • NAID

      130002103038

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] AxR,an AraC family transcriptional activator of the xylanase 3 gene, requires xylo-oligosaccharides as a cofactor for DNA binding in Paenibacillus sp. strain W-61.2012

    • Author(s)
      Fukuda, M., Yoshida, S., Itoh, H., Katoh, Y., Watanabe, S.,Itoh, Y., Kamio, Y., Kaneko, J.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 76 Pages: 1051-1054

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Membrane-damaging activity against various phospholipid liposomes by γ-hemolysin, Staphylococcal two-component pore-forming cytolysin2012

    • Author(s)
      Tomita, N., Kamio, Y., Ohta
    • Journal Title

      Journal of Biomechanical Science and Engineering

      Volume: 7 Pages: 292-304

    • NAID

      130002066927

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 偏成嫌気性細菌Selenomonas ruminantiumの表層膜安定化機構ー細胞壁結合型カダベリンの分子機能及びその合成・制御系ー2012

    • Author(s)
      児島征司、神尾好是
    • Journal Title

      ビタミン

      Volume: 86 Pages: 1-12

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 変性嫌気性細菌Selenomonas ruminantiumの表層膜安定機構-細胞壁結合型カダベリンの分子機能及びその合成・制御系2012

    • Author(s)
      児島征司、神尾好是
    • Journal Title

      ビタミン

      Volume: 86 Pages: 1-12

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cadaverine covalently linked to the peptidoglycan serves as the correct constituent for the anchoring mechanism between the outer membrane and peptideglycan in Selenomona s r uminantium2011

    • Author(s)
      S. Kojima, J. Kaneko, N. Abe, Y . Takatsuka & Y . Kamio
    • Journal Title

      J . Bacteriol

      Volume: 193 Pages: 2347-2350

    • Related Report
      2013 Final Research Report
  • [Journal Article] 2-Methyl-2, 4-pentanediol induces spontaneous assembly of staphylococcal α-hemolysin into heptameric pore structure2011

    • Author(s)
      Y. Tanaka, N. Hirano, J. Kaneko, Y. Kamio, M. Yao, & I. Tanaka
    • Journal Title

      Protein Science

      Volume: 20 Pages: 448-456

    • Related Report
      2013 Final Research Report
  • [Journal Article] Cluster-forming property correlated with hemolytic activity by staphylococcal γ-hemolysin transmembrane pores2011

    • Author(s)
      N. Tomita, K. Abe, Y . Kamio & M. Ohta
    • Journal Title

      FEBS Letter

      Volume: 585 Pages: 2452-2456

    • Related Report
      2013 Final Research Report
  • [Journal Article] Crystal structure of the octameric pore of staphylococcal γ-hemolysin reveals the β-barrel pore formation mechanism by two components2011

    • Author(s)
      K. Yamashita, Y . Kawai, Y . Tanaka, M. Hirano, J. Kaneko, N. Tomita, M. Ohta, Y . Kamio, M. Yao & I. T anaka
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 108 Pages: 17314-17319

    • Related Report
      2013 Final Research Report
  • [Journal Article] Probabilistic study on subunit mismatch arrangement in staphylococcal γ-hemolysin heteroheptameric trans-membrane pore2011

    • Author(s)
      N. T omita, K. Abe, J. Kaneko, Y . Kamio & M. Ohta
    • Journal Title

      J . Biomecha nical Science and Engineering

      Volume: 6 Pages: 286-298

    • Related Report
      2013 Final Research Report
  • [Journal Article] Cadaverine covalently linked to the peptidoglycan serves as the correct constituent for the anchoring mechanism between the outer mbrane and peptidoglycan in Selenomonas ruminantium2011

    • Author(s)
      Kojima S., J.Kaneko, N.Abe, Y.Takatsuka, Y.Kamio
    • Journal Title

      Journal of Bacteriology

      Volume: 193 Issue: 9 Pages: 2347-2350

    • DOI

      10.1128/jb.00106-11

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cluster-forming property correlated with hemolytic activity by staphylococcal Y-hemolysin transmembrane pores2011

    • Author(s)
      Tomita N, Abe K, Kamio Y, Ohta M
    • Journal Title

      FEBS Letter

      Volume: 585 Pages: 2452-2456

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the octameric pore of staphylococcal γ-hemolysin reveals the β-barrel pore formation mechanism by two components2011

    • Author(s)
      Keitaro Yamashita, Yuka Kawai, Yoshikazu Tanaka, Nagisa Hirano, Jun Kaneko, Noriko Tomita, Makoto Ohta, Yoshiyuki Kamio, Min Yao, Isao Tanaka
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 108 Issue: 42 Pages: 17314-17319

    • DOI

      10.1073/pnas.1110402108

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 2-Methyl-2,4-pentanediol induces spontaneous assembly ofstaphylococcal α-hemolysin into heptameric pore structure2011

    • Author(s)
      Tanaka Y, N. Hirano, J. Kaneko, Y. Kamio, M.Yao, and I. Tanaka
    • Journal Title

      Protein Science

      Volume: 20 Issue: 2 Pages: 448-456

    • DOI

      10.1002/pro.579

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probabilistic Study on Subunit Mismatch Arrangement in Staphylococcal .GAMMA.-hemolysin Heteroheptameric Transmembrane Pore2011

    • Author(s)
      Noriko Tomita, Kazuyo Abe, Jun Kaneko, Yoshiyuki Kamio, Makoto Ohta
    • Journal Title

      Journal of Biomechanical Science and Engineering

      Volume: 6 Issue: 4 Pages: 286-298

    • DOI

      10.1299/jbse.6.286

    • NAID

      130001089213

    • ISSN
      1880-9863
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細菌細胞壁結合ポリアミンの膜安定化機構と合成制御2013

    • Author(s)
      神尾好是
    • Organizer
      日本農芸化学会大会シンポジウム
    • Place of Presentation
      仙台
    • Year and Date
      2013-03-28
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ルーメン細菌 Selenomona s r umina ntium subsp. lactilytica T AM6421 株のゲノム解析2013

    • Author(s)
      小野寺智子, 神尾好是, 金子淳
    • Organizer
      日本農芸化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2013-03-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Molecular basis for the maintenance of cell envelope integrity in Selenomona s r umina ntium which possesses cadaverine as an essential constituent of the peptidoglycan and regulation of the biosynthesis of cadaverine2013

    • Author(s)
      Y . Kamio
    • Organizer
      第4回ポリアミン学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2013-01-24
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Molecular basis for the maintenance of cell envelope integrity in Selenomonas ruminantium which possesses cadaverine as an essential constituent of the peptidoglycan and regulation of the biosynthesi of cadaverine (特別講演)2013

    • Author(s)
      神尾好是
    • Organizer
      第4回ポリアミン学会
    • Place of Presentation
      ホテル松島大観荘、仙台
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細菌細胞壁結合ポリアミンの膜安定化機構と合成制御 (シンポジウム)2013

    • Author(s)
      神尾好是
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学川内北キャンパス、仙台
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ルーメン細菌Selenomonas ruminantium subsp. lactilyticaTAM6421株のゲノム解析2013

    • Author(s)
      小野寺智子
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学川内北キャンパス、仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] 黄色ブドウ球菌の2成分性膜孔結成血球崩壊毒素性分の細胞特殊性に関与する領域の解析2013

    • Author(s)
      竹下珠由
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学川内北キャンパス、仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] シロイヌナズナのポリアミン酸化酵素はすべて逆変換反応を触媒する2013

    • Author(s)
      Kim Dong Wook
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学川内北キャンパス、仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] Degradation of a Selenomona srumina ntium lysine/ornithine decarboxylase by ClpX/P proteolysis system which requires bacterial antizyme2012

    • Author(s)
      Y . Kamio
    • Organizer
      Japan-Finland Biotechnology Symposium
    • Place of Presentation
      Sendai
    • Year and Date
      2012-06-04
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Degradation of a Selenomonas ruminantium lysine decarboxylase by ClpXP proteolysis system which requires bacterial antizyme, P222012

    • Author(s)
      Yoshiyuki Kamio
    • Organizer
      Japan-Finland Biotechnology symposium 2012
    • Place of Presentation
      Tohoku Gakuinn University, Sendai, Japan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Bacterial two component, and hetero-oligomeric cytolytic toxin : Structure, pore forming mechanism, and organization of the genes2011

    • Author(s)
      Y . Kamio
    • Organizer
      8th Inter na tiona l conf erence of Fluid Science of Flow dy namics
    • Place of Presentation
      Hotel Metropolitan Sendai, Sendai
    • Year and Date
      2011-11-09
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Bacterial Two-component and Hetero-oligomeric Pore-forming Cytolytic Toxins : Structures, Pore-forming Mechanism, and the Organization of the Genes2011

    • Author(s)
      Yoshiyuki KAMIO
    • Organizer
      東北大学流体科学研究所国際シンポジウム
    • Place of Presentation
      仙台ホテルメトロポリタン(招待講演)
    • Year and Date
      2011-11-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] Degradation of a Selenomonas ruminantium lysine/ornithine decarboxylase by ClpXP proteolysis system which requires bacterial antizyme, P222011

    • Author(s)
      H. Numako, Y. Takatsuka, S.Yamada-Narita, J. Kaneko, N. Fujita & Y. Kamio
    • Organizer
      International Union of Microbiological Society 2011 Congress
    • Place of Presentation
      Sapporo
    • Year and Date
      2011-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Degradation of a Selenomonas ruminantium lysine/ornithine decarboxylase by CIpXP proteolysis system which requires bacterial antizyme, P222011

    • Author(s)
      Hi.Numako, Y.Takatsuka, S.Yamada-Narita, J.Kaneko, N.Fujita, Y.Kamio
    • Organizer
      International Union of Microbiological society 2011 Congress
    • Place of Presentation
      Sapporo Convention Center
    • Year and Date
      2011-09-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Selenomonas ruminantium におけるペプチドグリカン(PG) 結合型カダベリンを介した外膜-PG 間接着機構の解析2011

    • Author(s)
      児島征司, 高塚由美子, 阿部直, 金子淳, 神尾好是
    • Organizer
      日本農芸化学会全国大会
    • Place of Presentation
      京都
    • Year and Date
      2011-03-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Selenomonas ruminantium におけるペプチドグリカン(PG) 結合型カダベリンを介した外膜-PG 間安定化機構の解析2011

    • Author(s)
      児島征司, 高塚由美, 阿部直, 金子淳, 神尾好是
    • Organizer
      日本ポリアミン学会 第2回年会
    • Place of Presentation
      宇都宮
    • Year and Date
      2011-01-28
    • Related Report
      2013 Final Research Report
  • [Presentation] 黄色ブドウ球菌の2成分性膜孔形成血球崩壊毒素S成分の細胞特異性に関する領域の解析

    • Author(s)
      竹下珠由、長崎由依、神尾好是、田中良和、金子淳
    • Organizer
      日本農芸化学会
    • Place of Presentation
      明治大学生田キャンパス
    • Related Report
      2013 Annual Research Report
  • [Book] Bacterial antizyme in "Polyamines: A universal molecular nexus for growth, survival and specialised metabolism"2014

    • Author(s)
      Y. Kamio, Y. Yamaguchi and J. Kaneko
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Bacterial antizyme in "Poly a mines : A univer sal molecular nexus for gr owth, survival and specialized meta bolism", edited by T. Kusano and H. Suzuki

    • Author(s)
      Y . Kamio, Y . Y amaguchi & J. Kaneko
    • Publisher
      Springer, Tokyo(印刷中)
    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-04-06   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi