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Lantibiotic engineering: peptide engineering approach using the modification enzymes

Research Project

Project/Area Number 23380050
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionKyushu University

Principal Investigator

SONOMOTO Kenji  九州大学, (連合)農学研究科(研究院), 教授 (10154717)

Co-Investigator(Kenkyū-buntansha) KOHDA Daisuke  九州大学, 生体防御医学研究所, 教授 (80186618)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2013: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2011: ¥8,450,000 (Direct Cost: ¥6,500,000、Indirect Cost: ¥1,950,000)
Keywordsランチビオティック / 異常アミノ酸 / nukacin ISK-1 / ペプチドデザイン / 翻訳後修飾 / 脱水・環化 / 基質認識ドメイン / リーダーペプチド / 異常アミノ酸形成酵素NukM / 結晶化 / ペプチドの機能改変 / プロタミン / 表面プラズモン共鳴
Research Abstract

Nukacin ISK-1 is a lantibiotic produced by Staphylococcus warneri ISK-1. Ribosomally synthesized precursor peptide, NukA undergoes introduction of unusual amino acids by a single modification enzyme, NukM, and the leader sequence is removed and the mature peptide is secreted by ABC transporter NukT. NukM was divided into two domains, NukMN and NukMC, based on a prediction that each domain is responsible for dehydration (phosphorylation and further phosphate elimination) and cyclization, respectively. The in vitro reconstitution of NukM, NukMN, and NukMC revealed that NukM can fully modify NukA, and NukMN could partially phosphorylate and dehydrate it. A series of NukT mutants were constructed and their transport activity in vivo and peptidase activity in vitro were investigated. It was suggested that peptidase activity of NukT depends on ATP hydrolysis, and the N-terminal peptidase domain of NukT may cooperatively function with the C-terminal ATP-binding domain.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (29 results)

All 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (14 results) (of which Invited: 8 results) Book (2 results) Remarks (4 results)

  • [Journal Article] Effects of bacteriocins on methicillin-resistant Staphy lococcus a ureus biofilm. Antimicrob2013

    • Author(s)
      Ken-ichi Okuda, T akeshi Zendo, Shinya Sugimoto, T adayuki Iwase, Akiko T ajima, Satomi Y amada, Kenji Sonomoto & Y oshimitsu Mizunoe
    • Journal Title

      Agents Chemother

      Volume: 57 Issue: 11 Pages: 5572-5579

    • DOI

      10.1128/aac.00888-13

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of the novel two-component NsrRS and LcrRS systems in distinct resistance pathways against nisin A and nukacin ISK-1 in Streptococcus mutans2013

    • Author(s)
      Miki Kawada-Matsuo, Yuichi Oogai, Takeshi Zendo, Jun-ichi Nagao, Yukie Shibata, Yoshihisa Yamashita, Yoshitoshi Ogura, Tetsuya Hayashi, Kenji Sonomoto & Hitoshi Komatsuzawa
    • Journal Title

      Appl. Eniviron. Microbiol

      Volume: 79 Issue: 15 Pages: 4751-4755

    • DOI

      10.1128/aem.00780-13

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Three distinct two-component systems are involved in resistance to the class I bacteriocins, Nukacin ISK-1 and nisin A, in S ta phy lococcus aureus2013

    • Author(s)
      Miki Kawada-Matsuo, Y uuma Y oshida, T akeshi Zendo, Jun-ichi Nagao, Y uichi Oogai, Kenji Sonomoto, Y asunori Nakamura, Norifumi Nakamura & Hitoshi Komatsuzawa
    • Journal Title

      PLoS One

      Volume: 8(7) Issue: 7 Pages: e69455-e69455

    • DOI

      10.1371/journal.pone.0069455

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Antimicrobial mechanism of lantibiotics2012

    • Author(s)
      Mohammad Riazul Islam, et al.
    • Journal Title

      Biochemical Society Transactions

      Volume: 40 Issue: 6 Pages: 1528-1533

    • DOI

      10.1042/bst20120190

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Antibacterial Peptides “Bacteriocins”: An Overview of Their Diverse Characteristics and Applications2012

    • Author(s)
      Mami Nishie, Jun-ichi Nagao & Kenji Sonomoto
    • Journal Title

      Biocontrol Science

      Volume: 17 Issue: 1 Pages: 1-16

    • DOI

      10.4265/bio.17.1

    • NAID

      10030447756

    • ISSN
      1342-4815, 1884-0205
    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ring A of nukacin ISK-1 : a lipid II-binding motif for type-A (II) lantibiotic2012

    • Author(s)
      ISLAM M.R., et al
    • Journal Title

      Journal of the American Chemical Society

      Volume: 134 Issue: 8 Pages: 3687-3690

    • DOI

      10.1021/ja300007h

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced production of nukacin D13E in Lactococcus lactis NZ9000 by the additional expression of immunity genes2012

    • Author(s)
      Tijo Varghese Puramattathu, et al
    • Journal Title

      Applied Microbiology and Biotechnoly

      Volume: 93 Issue: 2 Pages: 671-678

    • DOI

      10.1007/s00253-011-3563-1

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methodologies and strategies for the bioengineering of lantibiotics2011

    • Author(s)
      Jun-ichi Nagao, Mami Nishie & Kenji Sonomoto
    • Journal Title

      Current Pharmaceutical Biotechnology

      Volume: 12 Issue: 8 Pages: 1221-1230

    • DOI

      10.2174/138920111796117274

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lantibiotic transporter requires cooperative functioning of the peptidase domain and the ATP binding domain2011

    • Author(s)
      Mami Nishie, et al
    • Journal Title

      Journal of Biological Chemistry

      Volume: 286 Issue: 13 Pages: 11163-11169

    • DOI

      10.1074/jbc.m110.212704

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Mechanism of mutual regulation between peptidase and A TPase domains of a bifunctional ABC transporter for lantibiotic synthesis2013

    • Author(s)
      鄭 森, 永尾潤一, 西江麻美, 善藤威史, 園 元 謙 二
    • Organizer
      第65回日本生物工学会大会(2013)
    • Place of Presentation
      広島国際会議場 (広島市)
    • Year and Date
      2013-09-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Mode of action of type-A(II) lantibiotic : a lipid II-binding motif for nukacin ISK-12012

    • Author(s)
      Kenji Sonomoto
    • Organizer
      How bugs kill bugs : progress and challenges in bacteriocin research
    • Place of Presentation
      University of Nottingham (Nottingham, イギリス)
    • Year and Date
      2012-07-17
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Lantibiotic transporter NukT , ABC transporter maturation and secretion protein2012

    • Author(s)
      Kenji Sonomoto
    • Organizer
      3rd International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Villeneuve d'Ascq(Lille, フランス共和国)
    • Year and Date
      2012-06-15
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Ring A of nukacin ISK-1 : a lipid II-binding motif for type-A(II) lantibiotic2012

    • Author(s)
      Mohammad Riazul Islam & Kenji Sonomoto
    • Organizer
      3rd International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Villeneuve d'Ascq (Lille, フランス共和国)
    • Year and Date
      2012-06-15
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Lantibiotic transporter , NukT , requires cooperative functioning of the peptidase domain and the A TP binding domain2012

    • Author(s)
      Kenji Sonomoto, Mami Nishie & Jun-ichi Nagao
    • Organizer
      ATP-Binding Cassette (ABC) Proteins : From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      国際会議場(Innsbruck, オーストリア)
    • Year and Date
      2012-03-08
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Lantibiotic transporter, NukT, requires cooperative functioning of the peptidase domain and the ATP binding domain2012

    • Author(s)
      Kenji Sonomoto
    • Organizer
      ATP-Binding Cassette (ABC) Proteins : From Multidrug Resistance to Genetic Diseases
    • Place of Presentation
      Innsbruck, Austria(招待講演)
    • Year and Date
      2012-03-08
    • Related Report
      2011 Annual Research Report
  • [Presentation]2012

    • Author(s)
      Kenji Sonomoto
    • Organizer
      The Young Scientist Seminar 2011 Bioresources : Their Potentials & Applications New Era of Lactic Acid Bacteria to Open the Future
    • Place of Presentation
      国際会議場(Bangkok, タイ)
    • Year and Date
      2012-01-31
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] New Era of Lactic Acid Bacteria to Open the Future2012

    • Author(s)
      Kenji Sonomoto
    • Organizer
      The Young Scientist Seminar 2011 (Bioresources : Their Potentials & Applications)
    • Place of Presentation
      Bangkok, Thailand(招待講演)
    • Year and Date
      2012-01-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] New Insight of Lantibiotic Engineering : Characterization of the enzymes, design and mode of action of lantibiotics, and immunity proteins2011

    • Author(s)
      Kenji Sonomoto
    • Organizer
      Enzyme Engineering XXI
    • Place of Presentation
      Vail, CO, USA
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] New Insight of Lantibiotic Engineering : Characterization of the enzymes, design and mode of action of lantibiotics, and immunity proteins2011

    • Author(s)
      Kenji Sonomoto, Mami Nishie, Mohammad R. Islam, Jun-ichi Nagao, T akeshi Zendo & Jiro Nakayama
    • Organizer
      Enzyme Engineering XXI
    • Place of Presentation
      国際会議場(Vail, コロラド, 米国)
    • Related Report
      2013 Final Research Report
  • [Presentation] Mechanism of mutual regulation between peptidase and ATPase domains of a bifunctional ABC transporter for lantibiotic synthesis

    • Author(s)
      鄭 森, 永尾潤一, 西江麻美, 善藤威史, 園元謙二
    • Organizer
      第65回日本生物工学会大会(2013)
    • Place of Presentation
      広島国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation] Lantibiotic transporter NukT, ABC transporter maturation and secretion protein

    • Author(s)
      Kenji Sonomoto
    • Organizer
      3rd International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Villeneuve d'Ascq(Lille、フランス共和国)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Ring A of nukacin ISK-1: a lipid II-binding motif for type-A(II) lantibiotic

    • Author(s)
      Mohammad Riazul Islam
    • Organizer
      3rd International Symposium on Antimicrobial Peptides
    • Place of Presentation
      Villeneuve d'Ascq(Lille、フランス共和国)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Mode of action of type-A(II) lantibiotic: a lipid II-binding motif for nukacin ISK-1

    • Author(s)
      Kenji Sonomoto
    • Organizer
      How bugs kill bugs: progress and challenges in bacteriocin research
    • Place of Presentation
      University of Nottingham(Nottingham、イギリス)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] Lactic Acid Bacteria and Bifidobacteria: Current Progress in Advanced Research2011

    • Author(s)
      Kenji Sonomoto & Atsushi Yokota(編著)
    • Total Pages
      286
    • Publisher
      Caister Academic Press
    • Related Report
      2013 Final Research Report
  • [Book] Lactic Acid Bacteria and Bifidobacteria : Current Progress in Advanced Research2011

    • Author(s)
      Kenji Sonomoto
    • Total Pages
      286
    • Publisher
      Caister Academic Press
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2013 Final Research Report
  • [Remarks] 九州大学大学院農学研究院生命機能科学部門分子微生物学・バイオマス資源化学講座微生物工学分野

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 九州大学大学院農学研究院生命機能科学部門分子微生物学・バイオマス資源化学講座微生物工学分野

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.kyushu-u.ac.jp/lab/microbt/

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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