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Genetic diversity and conservation of Asian native livestock based on development of international standard SNP sysytem

Research Project

Project/Area Number 23380165
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied animal science
Research InstitutionKobe University

Principal Investigator

MANNEN Hideyuki  神戸大学, (連合)農学研究科(研究院), 教授 (20263395)

Co-Investigator(Kenkyū-buntansha) SASAZAKI Shinji  神戸大学, 大学院・農学研究科, 准教授 (50457115)
NISHIBORI Masahide  広島大学, 大学院・生物圏科学研究科, 准教授 (80237718)
SHIMOGIRI Takeshi  鹿児島大学, 農学部, 准教授 (40315403)
HONDA Takeshi  神戸大学, 大学院・農学研究科, 助教 (10432551)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2013: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2012: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2011: ¥9,750,000 (Direct Cost: ¥7,500,000、Indirect Cost: ¥2,250,000)
Keywordsアジア / 在来家畜 / SNP / ゲノム / 遺伝的多様性 / 多様性
Research Abstract

The aim of this study was to develop SNP system and estimate genetic diversity of Asian cattle, pig, chicken and goat. We developed the SNP system consisting of 121 SNPs in cattle, 101 SNPs in pig, 76 SNPs in chicken and 58 SNPs in goat. Using these SNP systems, we revealed genetic divergence of the breeds and populations, and degree of genetic admixture among breeds/populations. In order to conserve the genetic diversity of Asian native livestock, regional and scarcity lineage, breed and population should be maintained by using genetic indices obtained from genetic markers, such as SNP system developed in this study.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (29 results)

All 2014 2013 2012 2011

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (17 results)

  • [Journal Article] Identification of quantitative trait loci affecting economic traits based on divergently selected regions between beef and dairy cattle2013

    • Author(s)
      Yamaji K, Hosokawa D, Ishii AI, Oyama K, Mannen H, Sasazaki S
    • Journal Title

      Livestock Science

      Volume: 155 Issue: 2-3 Pages: 180-185

    • DOI

      10.1016/j.livsci.2013.05.017

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity and structure in Asian native goat analyzed by newly-developed SNP markers2013

    • Author(s)
      Lin BZ, Kato T, Kaneda M, Matsumoto H, Sasazaki S, Mannen H
    • Journal Title

      Anim. Sci. J

      Volume: 84(8) Issue: 8 Pages: 579-584

    • DOI

      10.1111/asj.12039

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeography and genetic diversity of East Asian goats2013

    • Author(s)
      Lin BZ, Odahara S, Ishida M, Kato T, Sasazaki S, Nozawa K, Mannen H
    • Journal Title

      Anim Genet

      Volume: 44(1) Issue: 1 Pages: 79-85

    • DOI

      10.1111/j.1365-2052.2012.02358.x

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 兵庫県黒毛和種肥育集団における経済形質関連遺伝子の効果2013

    • Author(s)
      大倉一輝・秋山敬孝・吉田恵実・福島護之・岩本英治・岡章生・松本大和・笹崎晋史・大山憲二・万年英之
    • Journal Title

      日本畜産学会報

      Volume: 84 Pages: 157-162

    • NAID

      10031177467

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of Myanmar and Indonesia native chickens together with two jungle fowl species by using 102 indels polymorphisms.Asian-Aust2012

    • Author(s)
      Maw AA, T. Shimogiri, Riztyan, K. Kawabe, Y. Kawamoto, S. Okamoto
    • Journal Title

      J. Anim. Sci

      Volume: 25(7) Issue: 7 Pages: 927-934

    • DOI

      10.5713/ajas.2011.11511

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] DigiTag2 法を用いたブタSNPs 解析システムの構築とその分子系統解析への応用2012

    • Author(s)
      西堀正英, 澤田裕紀子, 庭田 悟, 下桐 猛, 安江 博
    • Journal Title

      DNA多型

      Volume: 20 Pages: 17-20

    • URL

      http://dnapol.umin.jp/

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The SNPs in the ACACA gene are effective on fatty acid composition in Holstein milk.2012

    • Author(s)
      Matsumoto H, Sasaki K, Bessho T, Kobayashi E, Abe T, Sasazaki S, Oyama K, Mannen H
    • Journal Title

      Mol Biol Rep

      Volume: 39 Issue: 9 Pages: 8637-8644

    • DOI

      10.1007/s11033-012-1718-5

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of Myanmar and Indonesia native chickens together with two jungle fowl species by using 102 indels polymorphisms2012

    • Author(s)
      Maw AA, Shimogiri T, Riztyan, Kawabe K, Kawamoto Y, Okamoto S
    • Journal Title

      Asian-Australasian Journal of Animal Science

      Volume: 25 Pages: 927-934

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DigiTag2法を用いたブタSNPs解析システムの構築とその分子系統解析への応用2012

    • Author(s)
      西堀正英・澤田裕紀子・庭田 悟・下桐 猛・安江 博
    • Journal Title

      DNA 多型

      Volume: 20 Pages: 17-20

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of divergently selected regions between Japanese Black and Holstein cattle using bovine 50k SNP array2012

    • Author(s)
      Hosokawa D, Ishii A, Yama j i K, Sasazaki S, Oyama K, Mannen H
    • Journal Title

      Animal Science Journal

      Volume: 83 Issue: 1 Pages: 7-13

    • DOI

      10.1111/j.1740-0929.2011.00927.x

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Allele Frequencies of gene polymorphisms related to economic trait in Bos taurus and Bos indicus cattle breeds2011

    • Author(s)
      Kaneda M, Lin BZ, Sasazaki S, Oyama K, Mannen H
    • Journal Title

      Animal Science Journal

      Volume: 82 Issue: 6 Pages: 717-721

    • DOI

      10.1111/j.1740-0929.2011.00910.x

    • NAID

      10030566664

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of discrimination markers between Japanese domestic and imported beef2011

    • Author(s)
      Sasazaki S, Hosokawa D, Ishihara R, Aihara H, Oyama K, Mannen H
    • Journal Title

      Anim. Sci. J

      Volume: 82 Issue: 1 Pages: 67-72

    • DOI

      10.1111/j.1740-0929.2010.00820.x

    • NAID

      10030375399

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Genetic diversity and relationship among 16 Asian and European cattle populations using 121 autosomal SNPs genotypes by the DigiTag2 assay2014

    • Author(s)
      Yonesaka R, Sasazaki S, Yasue H, Niwata S, Mukai F, Mannen H
    • Organizer
      34th International Conference on Animal Genetics
    • Place of Presentation
      Xian, China
    • Related Report
      2013 Final Research Report
  • [Presentation] Paternal genetic structure of Asian goats using SRY gene2014

    • Author(s)
      Waki A, Sasazaki S, Kobayashi E, Mannen H
    • Organizer
      34th International Conference on Animal Genetics
    • Place of Presentation
      Xian, China
    • Related Report
      2013 Final Research Report
  • [Presentation] Genetic diversity and relationship among 16 Asian and European cattle populations using 121 autosomal SNPs genotypes by the DigiTag2 assay2014

    • Author(s)
      Yonesaka R, Sasazaki S, Yasue H, Niwata S, Mukai F, Mannen H
    • Organizer
      34nd International Conference on Animal Genetics
    • Place of Presentation
      Xian, China
    • Related Report
      2013 Annual Research Report
  • [Presentation] SRY 遺伝子を用いたアジア在来家畜ヤギの多様性解析2013

    • Author(s)
      脇 愛生, 笹崎晋史, 万年 英之
    • Organizer
      第116回日本畜産学会大会
    • Place of Presentation
      広島
    • Year and Date
      2013-03-30
    • Related Report
      2013 Final Research Report
  • [Presentation] DigiTag2 法を用いたブタおよびイノシシのSNP 解析システムの構築とその分子系統解析2012

    • Author(s)
      浜田秀一, 大西諒貴, 庭田悟, 下桐猛, 小林栄治, 安江博, 西堀正英
    • Organizer
      日本動物遺伝育種学会
    • Place of Presentation
      東北大学
    • Year and Date
      2012-10-06
    • Related Report
      2013 Final Research Report 2012 Annual Research Report
  • [Presentation] プーリング法を用いた高密度SNP解析による黒毛和種閉鎖集団の遺伝的多様性の評価2012

    • Author(s)
      加藤大樹・松本大和・笹崎晋史・秋山敬孝・吉田恵実・福島護之・万年英之
    • Organizer
      第115回日本畜産学会大会
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] 分子遺伝学から見たアジア在来牛の起源・系統史研究2012

    • Author(s)
      万年英之
    • Organizer
      日本動物遺伝育種学会・在来家畜研究会合同シンポジウム
    • Place of Presentation
      名古屋大学(愛知県)(招待講演)
    • Year and Date
      2012-03-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genetic diversity and structure in goat analyzed by newly-developed SNPs2012

    • Author(s)
      Mannen H, Lin BZ, Kato T, Kaneda M, Matsumoto M, Sasazaki S
    • Organizer
      33rd International Conference on Animal Genetics
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2013 Final Research Report
  • [Presentation] Evaluation of genetic diversity in Japanese Black cattle population using SNP-MaP strategy2012

    • Author(s)
      Kato T, H Matsumoto, S Sasazaki, T Akiyama, M Fukushima, E Yoshida, T Nomura, H Mannen
    • Organizer
      33rd International Conference on Animal Genetics
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2013 Final Research Report
  • [Presentation] Genotyping of genes responsible for 7 defective traits in Japanese Black by the DigiTag2 assay2012

    • Author(s)
      Yasue H, Shimogiri T, Niwata S, Nishibori M, Mannen H
    • Organizer
      33rd International Conference on Animal Genetics
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2013 Final Research Report
  • [Presentation] Genotyping of genes responsible for 7 defective traits in Japanese Black by the DigiTag2 assay2012

    • Author(s)
      Yasue Y, Shimogiri T, Niwata S, Nishibori M, Mannen H
    • Organizer
      International Society of Animal Genetics
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genetic diversity and structure in goat analyzed by newly-developed SNPs2012

    • Author(s)
      Mannen H, B.Z. Lin, T. Kato, M. Kaneda, H. Matsumoto, S. Sasazaki
    • Organizer
      International Society of Animal Genetics
    • Place of Presentation
      Cairns, Australia
    • Related Report
      2012 Annual Research Report
  • [Presentation] 兵庫県黒毛和種肥育集団における経済形質関連遺伝子の遺伝構造2011

    • Author(s)
      大倉一輝、松本大和、秋山敬孝、吉田恵実、福島護之、笹崎晋史、万年英之
    • Organizer
      第12回日本動物遺伝育種学会大会
    • Place of Presentation
      広島大学(広島県)
    • Year and Date
      2011-11-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] DigiTag2アッセイを用いたウシ個体識別及び親子鑑定システムの確立2011

    • Author(s)
      梶山亮介, 原 和弘, 笹崎 晋史, 松本 大和, 安江博, 向井文雄, 万年英之
    • Organizer
      第61回関西畜産学会大会
    • Place of Presentation
      岡山
    • Year and Date
      2011-09-12
    • Related Report
      2013 Final Research Report
  • [Presentation] DigiTag2アッセイを用いたウシ個体識別及び親子鑑定システムの確立2011

    • Author(s)
      梶山亮介・原和弘・笹崎晋史・松本大和・安江博・向井文雄・万年英之
    • Organizer
      第61回関西畜産学会大会
    • Place of Presentation
      岡山大学(岡山県)
    • Year and Date
      2011-09-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] 黒毛和種閉鎖集団における形質関連遺伝子頻度の経時的変化2011

    • Author(s)
      加藤大樹・松本大和・笹崎晋史・秋山敬孝・吉田恵実・福島護之・万年英之
    • Organizer
      第61回関西畜産学会大会
    • Place of Presentation
      岡山大学(岡山県)
    • Year and Date
      2011-09-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of DNA markers associated with beef quality2011

    • Author(s)
      Mannen, H.
    • Organizer
      The Role of Agriculture and Natural Resources on Global Changes
    • Place of Presentation
      Chiang Mai, Thailand(招待講演)
    • Year and Date
      2011-07-08
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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