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Development of evaluation method of soil microorganisms evenness

Research Project

Project/Area Number 23380196
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Boundary agriculture
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

SHINANO Takuro  独立行政法人農業・食品産業技術総合研究機構, 東北農業研究センター農業放射線研究センター, センター長 (20235542)

Co-Investigator(Kenkyū-buntansha) OKAZAKI Keiki  独立行政法人農業・食品産業技術総合研究機構, 北海道農業研究センター・生産環境研究領域, 主任研究員 (40414750)
SEKIGUCHI Hiroyuki  独立行政法人農業・食品産業技術総合研究機構, 近畿中国四国農業研究センター・水田作研究領域, 主任研究員 (50466009)
IWATA Yukiyoshi  独立行政法人農業・食品産業技術総合研究機構, 農村工学研究所・農地基盤工学研究領域, 主任研究員 (70370591)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Fiscal Year 2013: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2012: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2011: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Keywords土壌微生物 / 一酸化二窒素 / メタゲノム / メタトランスクリプトーム / 凍結融解 / 多様性指数 / 次世代シーケンシング / 病害土壌 / 根圏土壌 / 土壌RNA
Research Abstract

We focus on nitrous oxide emission during freeze and thaw process in the field, and to investigate the diversity and evenness of the soil microorganism, metagenomic and metatranscriptomic approaches were applied on DNA and mRNA levels. The results indicate that during the bio-geochemical process, it is rather evenness play an important role than diversity of species number, indicating that few number of species seems to be increased with the process. We have applied the Functional Single Cell separation technique and obtain several isolates which seem to grow and lead the process dominantly under the cold condition.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (45 results)

All 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 7 results) Presentation (30 results) (of which Invited: 8 results) Book (6 results)

  • [Journal Article] Metagenomic Analysis of the Rhizosphere Soil Microbiome with Respect to Phytic Acid Utilization2013

    • Author(s)
      Yusuke Unno
    • Journal Title

      Microbes and Environments

      Volume: 28 Issue: 1 Pages: 120-127

    • DOI

      10.1264/jsme2.ME12181

    • NAID

      10031138552

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Water and nitrate movements in an agricultural field with different soil frost depths: field experiments and numerical simulation2013

    • Author(s)
      Iwata, Y., T. Yazaki, S. Suzuki, and T. Hirota
    • Journal Title

      Annals of Glaciology

      Volume: 54 Issue: 62 Pages: 157-165

    • DOI

      10.3189/2013aog62a204

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of phosphorus levels on the protein profiles of secreted protein and root surface protein of rice2013

    • Author(s)
      Shinano, T., Yoshimura, T., Watanabe, T., Unno, Y., Osaki, M., Nanjo, Y. and Komatsu, S.
    • Journal Title

      Journal of Proteome Research

      Volume: 12(11) Issue: 11 Pages: 4748-4756

    • DOI

      10.1021/pr400614n

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 結形態の異なる土壌への融雪水の浸入2013

    • Author(s)
      岩田幸良, 桑尾和伸, 廣田知良, 長谷川周一
    • Journal Title

      雪氷

      Volume: 75 Pages: 111-123

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 微生物資材の可能性と課題2013

    • Author(s)
      信濃卓郎
    • Journal Title

      ニューカントリー

      Volume: 70 Pages: 126-127

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Effect of exogenous phosphatase and phytase activities on organic phosphate mobilization in soils with different phosphate adsorption capacities2012

    • Author(s)
      Maruyama, H.
    • Journal Title

      Soil Science and Plant Nutrition

      Volume: 58(1) Pages: 41-51

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of secreted proteins from aseptically grown rice2011

    • Author(s)
      Shinano, T.
    • Journal Title

      Phyochemistry

      Volume: 72(4-5) Pages: 312-320

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ionomic response of Lotus japonicas to different root-zone temperature2011

    • Author(s)
      Quadir, Q.F.
    • Journal Title

      Soil Science and Plant Nutrition

      Volume: 57(2) Pages: 221-232

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 植物の有害元素2011

    • Author(s)
      信濃卓郎
    • Journal Title

      日本土壌肥料学雑誌

      Volume: 82(6) Pages: 504-510

    • Related Report
      2011 Annual Research Report
  • [Presentation] Evaluation of potential risks of soils for Fusarium wilt of spinach using nitrate-nonutilizing mutants of the pathogen, Fusarium oxysporum f. sp. spinaciae.2013

    • Author(s)
      Sekiguchi, H., Takehara, T., Tomioka, K., Nomiyama, K., Osaki, H., Miyagawa, H. and Shinano, T.
    • Organizer
      The 10th International Congress of Plant Pathology
    • Place of Presentation
      Beijing, China
    • Related Report
      2013 Annual Research Report
  • [Presentation] Phosphorus starvation changes the metabolic flow in rice.2013

    • Author(s)
      Shinano, T
    • Organizer
      JIRCAS Workshop: Improving Phosphorus Efficiency in Rice: Novel traits and underlying genes
    • Place of Presentation
      Tsukuba, Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 水ストレス条件下における堆肥施用がダイズの代謝プロファイルに与える影響2013

    • Author(s)
      岡崎圭毅,中村卓司,信濃卓郎,岡紀邦
    • Organizer
      日本土壌肥料学会2013年度名古屋大会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
  • [Presentation] -2℃で培養した土壌のN2O濃度と土壌水分量の推移2013

    • Author(s)
      岩田幸良, 海野祐介, 信濃卓郎, 清水真理子, 矢崎友嗣, 柳井洋介, 波多野隆介
    • Organizer
      日本土壌肥料学会2013年度名古屋大会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
  • [Presentation] nit変異株を用いた各地土壌のホウレンソウ萎凋病発病リスク評価の可能性2013

    • Author(s)
      関口博之
    • Organizer
      平成25年度日本植物病理学会
    • Place of Presentation
      岐阜大学(岐阜市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ミヤコグサAtMOT1相同遺伝子の機能解析2012

    • Author(s)
      箱山雅生
    • Organizer
      第53回日本植物生理学会
    • Place of Presentation
      京都産業大学(京都)
    • Year and Date
      2012-03-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] リン欠乏及びアルミニウム障害時におけるシロイヌナズナ野生株およびリンゴ酸分泌変異株の根浸出物の解析2012

    • Author(s)
      丸山隼人
    • Organizer
      第53回日本植物生理学会
    • Place of Presentation
      京都産業大学(京都)
    • Year and Date
      2012-03-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Ionomic study of soybean seed affected by previous cropping with mycorrhizal plant, manure and P applications2012

    • Author(s)
      Shimin Sha
    • Organizer
      第53回日本植物生理学会
    • Place of Presentation
      京都産業大学(京都)
    • Year and Date
      2012-03-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Decreasing soil frost depth and its influence on the soil water and nitrate movements in Tokachi, Hokkaido, Japan2012

    • Author(s)
      Iwata, Y., Hirota, T., Hayashi, M., Yazaki, T., Nemoto, M., Ohkubo, S., Yanai, Y., Suzuki, S
    • Organizer
      Plant and Microbe Adaptations to Cold
    • Place of Presentation
      札幌, 日本
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] valuation of microbial community structure and function in the field soil by using a comprehensive analysis methods of soil DNA and RNA (畑地土壌を対象としたDNA, RNAの網羅的解析による微生物群集構造の変化とその機能の評価)2012

    • Author(s)
      海野祐介
    • Organizer
      第28回日本微生物生態学会
    • Place of Presentation
      豊橋技術大学(豊橋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 土壌凍結融解が亜酸化窒素放出に関わる土壌微生物群集に与える影響2012

    • Author(s)
      関口萌子
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学(鳥取市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 凍結・融解履歴の有無による土壌中の一酸化二窒素濃度の推移の違い2012

    • Author(s)
      岩田良幸
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学(鳥取市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 融雪期の亜酸化窒素放出に関わる土壌細菌の探索2012

    • Author(s)
      関口萌子
    • Organizer
      2012年度日本土壌肥料学会北海道支部要旨集
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 植物根圏微生物の機能解析手法開発2012

    • Author(s)
      信濃卓郎
    • Organizer
      日本草地学会
    • Place of Presentation
      酪農学園大学(江別市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Behavior of Rhizosphere2012

    • Author(s)
      Takuro Shinano
    • Organizer
      北海道国際農学会議2012
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物と土壌の接点ー根圏ーをめぐる研究2012

    • Author(s)
      信濃卓郎
    • Organizer
      第30回農業環境科学研究会
    • Place of Presentation
      マロウドイン熊谷(熊谷市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Decreasing soil frost depth and its influence on the soil water and nitrate movements in Tokachi, Hokkaido, Japan2012

    • Author(s)
      Iwata, Y.
    • Organizer
      Plant and Microbe Adaptations to Cold 2012
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Metatranscriptomic approach to analyze freeze-thaw stress on the structure and function of soil microbiota with respect to denitrification process2012

    • Author(s)
      Unno, Y.
    • Organizer
      Plant and Microbe Adaptations to Cold 2012
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] トウモロコシの有機質肥料効率利用メカニズムの解明2011

    • Author(s)
      太平佳菜
    • Organizer
      日本土壌肥料学会北海道支部会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] Phosphorus starvation changes the metabolic flow in rice2011

    • Author(s)
      Shinano, T.
    • Organizer
      3^<rd> International Symposium on Frontiers in Agriculture Proteome Research
    • Place of Presentation
      Tsukuda, Japan(招待講演)
    • Year and Date
      2011-11-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] Metagenomic analysis on the rhizosphere soil microbiome2011

    • Author(s)
      Shinano, T.
    • Organizer
      3^<rd> International Workshop "Advances in Science and Technology of Natural Resources"
    • Place of Presentation
      Pucon, Chile(招待講演)
    • Year and Date
      2011-11-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] 飽和土壌中の一酸化二窒素濃度の低温領域での温度依存性と凍結・融解の効果2011

    • Author(s)
      岩田幸良
    • Organizer
      土壌物理学会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2011-10-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] 微生物全体から見たわずかな違いがもたらす植物生産性への意義2011

    • Author(s)
      信濃卓郎
    • Organizer
      日本土壌微生物生態学会シンポジウム
    • Place of Presentation
      京都大学農学部(京都)
    • Year and Date
      2011-10-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] Metagenomic approach reveals the rhizosphere function on phytate utilization2011

    • Author(s)
      Shinano, T.
    • Organizer
      Rhizosphere 3
    • Place of Presentation
      Perth, Australia
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 根の世界2011

    • Author(s)
      信濃卓郎
    • Organizer
      サッポロ農学校2011
    • Place of Presentation
      北海道大学農学部(札幌)
    • Year and Date
      2011-09-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌に根ざした作物栄養学の貢献-農業再考-2011

    • Author(s)
      信濃卓郎
    • Organizer
      日本学術振興会・日本土壌肥料学会共催シンポジウム
    • Place of Presentation
      つくば国際会議場(つくば)
    • Year and Date
      2011-08-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] Metagenomic analysis on the rhizosphere soil microbiome2011

    • Author(s)
      Shinano, T
    • Organizer
      3rd International Workshop "Advances in Science and Technology of Natural Resources"
    • Place of Presentation
      プコン, チリ
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Characterization of Phosphate Utilization in Arabidopsis thaliana Natural Accessions Grown on Soil2011

    • Author(s)
      Furutani, A.
    • Organizer
      Rhizosphere 3
    • Place of Presentation
      Perth, Australia
    • Related Report
      2011 Annual Research Report
  • [Presentation] Impacts of the change of snowfall pattern to the frost depth, water movement and nitrate movement in an arable field in northernmost Japan

    • Author(s)
      Iwata, Y.
    • Organizer
      Symposium on seasonal snow and ice
    • Place of Presentation
      Lahti(Finland)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 十勝における気候変動と土壌凍結

    • Author(s)
      岩田幸良
    • Organizer
      スクラム十勝シンポジウム2012
    • Place of Presentation
      メムロード(芽室町)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] Metagenomic analysis on the rhizosphere soil microbial community. In : Frans J. de Brjin (ed.) Molecular Microbial Ecology of the Rhizosphere2013

    • Author(s)
      Unno, Y. and Shinano, T
    • Total Pages
      1269
    • Publisher
      Wiley-Blackwell Publishers
    • Related Report
      2013 Final Research Report
  • [Book] Plant and microbe adaptations to cold in a changing world, p41-52, Possible change of water and nitrate cycles associated with the frost-depth decrease under climate change2013

    • Author(s)
      Iwata, Y., Hirota, T., Hayashi, M, Arima, J., Suzuki, S., Nemoto, M
    • Total Pages
      352
    • Publisher
      Springer
    • Related Report
      2013 Final Research Report
  • [Book] Molecular Microbial Ecology of the Rhizosphere Vol. 22013

    • Author(s)
      Unno, Y. and Shinano, T.
    • Total Pages
      1269
    • Publisher
      Wiley-Blackwell Publishers
    • Related Report
      2013 Annual Research Report
  • [Book] Possible change of water and nitrate cycles associated with the frost-depth decrease under climate change2013

    • Author(s)
      Iwata, Y., Hirota, T., Hayashi, M, Arima, J., Suzuki, S., Nemoto, M.
    • Total Pages
      352
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Metagenomic analysis on the rhizosphere soil microbial community. In: Frans J. de Brjin (ed.) Molecular Microbial Ecology of the Rhizosphere2013

    • Author(s)
      Unno, Y.
    • Total Pages
      1269
    • Publisher
      Wiley-Blackwell Publishers
    • Related Report
      2012 Annual Research Report
  • [Book] Frontiers in Agriculture Proteome Research2012

    • Author(s)
      Shinano, T.
    • Publisher
      NARO Institute of Crop Science
    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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