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Studies on adaptation ability to environmental stresses during structural transition of plant proteasome

Research Project

Project/Area Number 23380198
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionHokkaido University

Principal Investigator

YAMAGUCHI Junji  北海道大学, 理学(系)研究科(研究院), 教授 (10183120)

Co-Investigator(Kenkyū-buntansha) CHIBA Yukako  北海道大学, 大学院・理学研究院, 准教授 (70509546)
YANAGAWA Yuki  独立行政法人理化学研究所, 植物科学センター, 研究院 (90432591)
Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2011: ¥12,610,000 (Direct Cost: ¥9,700,000、Indirect Cost: ¥2,910,000)
Keywordsプロテアソーム / 環境適応 / プロテオーム / タンパク質分解 / 免疫 / 蛋白質 / 植物 / ユビキチン・プロテアソーム / 代謝 / ストレス寛容植物 / シロイヌナズナ
Research Abstract

The proteasome is a huge protein complex that degrades damaged and selective ubiquitinated proteins, and is related to various environmental stress responses. Although the biochemical characteristic of the proteasome is well-studied in mammals, the details of the plant proteasome remains unclear. Here, we used a proteomics approach to reveal the detailed subunit composition of the plant proteasome. Our 2D electrophoresis and LC-MS/MS analyses combined with affinity purification demonstrated the highly heterogeneous subunit composition of the proteasome due to plant-specific gene duplication and putative post-translational modification in plant cells. Moreover, our studies demonstrated that proteasome activity is affected by post-translational modification in response to pathogen signaling. Our study revealed new insights into the plant proteasome composition and regulatory mechanism, which may contribute to increased pathogen resistance and improved crop yield in agriculture.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (51 results)

All 2014 2013 2012 2011 Other

All Journal Article (25 results) (of which Peer Reviewed: 20 results,  Open Access: 7 results) Presentation (13 results) (of which Invited: 3 results) Book (9 results) Remarks (4 results)

  • [Journal Article] Phosphorylation of Arabidopsis ubiquitin ligase ATL31 is critical for plant C/N-nutrient response under control of 14-3-3 stability2014

    • Author(s)
      Yasuda S, Sato T, Maekawa S, Aoyama S, Fukao Y, Yamaguchi J
    • Journal Title

      J. Biol. Chem. online before publication

      Volume: (印刷中) Issue: 22 Pages: 15179-15193

    • DOI

      10.1074/jbc.m113.533133

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The carbon/nitrogen regulator ATL31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SYP121 in Arabidopsis2014

    • Author(s)
      Maekawa S, Inada N, Yasuda S, Fukao Y, Fujiwara M, Sato T, Yamaguchi J
    • Journal Title

      Plant Physiol

      Volume: 164 Issue: 2 Pages: 879-887

    • DOI

      10.1104/pp.113.230995

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ubiquitin ligase ATL31 functions in leaf senescence in response to the balance between atmospheric CO_2 and nitrogen availability in Arabidopsis2014

    • Author(s)
      Aoyama S, Huarancca Reyes T, Guglielminetti L, Yu L, Morita Y, Sato T, Yamaguchi J
    • Journal Title

      Plant Cell Physiol

      Volume: 55 Issue: 2 Pages: 293-305

    • DOI

      10.1093/pcp/pcu002

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of senescence under elevated atmospheric CO2 via ubiquitin modification2014

    • Author(s)
      Aoyama S, Lu Y, Yamaguchi J, Sato T
    • Journal Title

      Plant Signaling Behavior

      Volume: 9 Issue: 5 Pages: e28839-e28839

    • DOI

      10.4161/psb.28839

    • Related Report
      2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of senescence under elevated atmospheric CO2 via ubiquitin modification.2014

    • Author(s)
      Aoyama S, Lu Y, Sato T, Yamaguchi J
    • Journal Title

      Plant Signaling Behavior

      Volume: -

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Changes in mRNA stability associated with cold stress in Arabidopsis cells2013

    • Author(s)
      Chiba Y, Mineta K, Hirai MY, Suzuki S, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S
    • Journal Title

      Plant Cell Physiol

      Volume: 54 Issue: 2 Pages: 180-194

    • DOI

      10.1093/pcp/pcs164

    • NAID

      10031145661

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi2013

    • Author(s)
      Maruyama Y, Yamoto N, Suzuki Y, Chiba Y, Yamazaki K, Sato T, Yamaguchi J
    • Journal Title

      Plant Sci

      Volume: 213 Pages: 79-87

    • DOI

      10.1016/j.plantsci.2013.08.008

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Proteomics analysis reveals a highly heterogenous proteasome composition and the post-translational regulation of peptidase activity under pathogen signaling in plants2013

    • Author(s)
      Sun HH, Fukao Y, Ishida S, Yamamoto H, Maekawa S, Fujiwara M, Sato T, Yamaguchi J
    • Journal Title

      J. Proteome Res

      Volume: 12 Issue: 11 Pages: 5084-5095

    • DOI

      10.1021/pr400630w

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] C/Nバランス調節による植物の代謝・成長戦略2013

    • Author(s)
      佐藤長緒,山口淳二
    • Journal Title

      化学と生物

      Volume: 51 Pages: 763-772

    • NAID

      130004707380

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assay for proteasome-dependent protein degradation and ubiquitinated proteins2013

    • Author(s)
      Sato T, Sako K, Yamaguchi J
    • Journal Title

      Methods in Molecular Biology

      Volume: 1072 Pages: 655-663

    • DOI

      10.1007/978-1-62703-631-3_45

    • ISBN
      9781627036306, 9781627036313
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of gamete membrane dynamics during double fertilization of Arabidopsis2013

    • Author(s)
      Tomoko Igawa, Yuki Yanagawa, Shin-ya Miyagishima and Toshiyuki Mori
    • Journal Title

      Journal of Plant Research

      Volume: 126巻 Issue: 3 Pages: 387-394

    • DOI

      10.1007/s10265-012-0528-0

    • NAID

      10031169281

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the C/N response2012

    • Author(s)
      Shugo Maekawa
    • Journal Title

      Plant Mol. Biol.

      Volume: 79 Issue: 3 Pages: 217-227

    • DOI

      10.1007/s11103-012-9907-0

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sugar-inducible RPT2a, a subunit of 26S proteasome, participates in sugar response in <i>Arabidopsis</i>2012

    • Author(s)
      Huihui Sun
    • Journal Title

      Plant Biotechnology

      Volume: 29 Issue: 3 Pages: 279-284

    • DOI

      10.5511/plantbiotechnology.12.0409a

    • NAID

      10030804760

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis RPT2a, 19S proteasome subunit, regulates gene silencing via DNA methylation2012

    • Author(s)
      Kaori Sako
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 5 Pages: e37086-e37086

    • DOI

      10.1371/journal.pone.0037086

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A comprehensive analysis of interaction and localization of Arabidopsis SKP1-LIKE (ASK) and F-Box (FBX) proteins2012

    • Author(s)
      Kuroda O, Yanagawa Y, Takahashi N, Horii Y, Matsui M
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 11 Pages: e50009-e50009

    • DOI

      10.1371/journal.pone.0050009

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ubiquitin/ proteasome-mediated proteolysis is involved in the response to flooding stress in soybean roots, independent of oxygen limitation2012

    • Author(s)
      Yanagawa Y, Komatsu S
    • Journal Title

      Plant Sci

      Volume: 185-186 Pages: 250-258

    • DOI

      10.1016/j.plantsci.2011.11.014

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 序論:酵母から動植物まで包括するユビキチン-プロテアソーム系の新展開2012

    • Author(s)
      山口淳二,畠山鎮次
    • Journal Title

      生化学

      Volume: 84 Pages: 407-408

    • NAID

      10030809250

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Journal Article] 植物のRING型ユビキチンリガーゼとプロテアソームシステムの機能2012

    • Author(s)
      前川修吾,佐古香織,佐藤長緒
    • Journal Title

      生化学

      Volume: 84 Pages: 416-424

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Journal Article] プロテオーム解析から解く植物のユビキチン-プロテアソーム研究2012

    • Author(s)
      柳川由紀
    • Journal Title

      生化学

      Volume: 84 Pages: 448-454

    • NAID

      10030809444

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Journal Article] 植物26Sプロテアソームの多様な機能-「品質管理」にとどまらず器官サイズや遺伝子サイレンシングなど様々な現象を制御-2012

    • Author(s)
      佐古香織
    • Journal Title

      化学と生物

      Volume: 50 Pages: 232-234

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 理」にとどまらず器官サイズや遺伝子サイレンシングなど様々な現象を制御-2012

    • Author(s)
      佐古香織
    • Journal Title

      化学と生物

      Volume: 50 Pages: 232-234

    • Related Report
      2011 Annual Research Report
  • [Journal Article] The Arabidopsis NSL2 negatively controls systemic acquired resistance via hypersensitive response2011

    • Author(s)
      Asada Y
    • Journal Title

      Plant Biotechnology

      Volume: 28 Issue: 1 Pages: 9-15

    • DOI

      10.5511/plantbiotechnology.10.0913a

    • NAID

      10028258403

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis thaliana 26S Proteasome Subunits RPT2a and RPT5a Are Crucial for Zinc Deficiency-Tolerance2011

    • Author(s)
      Sakamoto, T., Kamiya, T., Sako, K., Yamaguchi, J., Yamagami, M. and Fujiwara, T
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 3 Pages: 561-567

    • DOI

      10.1271/bbb.100794

    • NAID

      10028202007

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis thaliana2011

    • Author(s)
      Takeo Sato
    • Journal Title

      Plant Journal

      Volume: 68 Issue: 1 Pages: 137-146

    • DOI

      10.1111/j.1365-313x.2011.04673.x

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Carbon and nitrogen metabolism regulated by the ubiquitin-proteasome system2011

    • Author(s)
      Takeo Sato
    • Journal Title

      Plant Signaling and Behavior

      Volume: 6 Issue: 10 Pages: 1465-1468

    • DOI

      10.4161/psb.6.10.17343

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Regulation of leaf organ size and gene silencing by plant proteasome2013

    • Author(s)
      Yamaguchi J
    • Organizer
      The 35th Naito Conference on "The Ubiquitin-Proteasome System : From Basic Mechanisms to Pathophysiological Roles"
    • Place of Presentation
      Chateraise Gateaux Kingdom Sapporo, Japan
    • Related Report
      2013 Final Research Report
  • [Presentation] ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis, is also involved in defence response mediated by membrane traffic system2013

    • Author(s)
      Yamaguchi J
    • Organizer
      Challenges in Biology- Big Data and Ethics in "Plants and People Conference", Max Planck Institute of Molecular Plant Physiology
    • Place of Presentation
      Potsdam, Germany
    • Related Report
      2013 Final Research Report
  • [Presentation] 植物を用いた遺伝子技術の将来2012

    • Author(s)
      山口淳二
    • Organizer
      北海道農業研究推進会議生物工学部会
    • Place of Presentation
      札幌, 北海道
    • Year and Date
      2012-02-07
    • Related Report
      2013 Final Research Report
  • [Presentation] ユビキチン-プロテアソームシステムによるC/N代謝制御の分子基盤-シロイヌナズナからマイクロトマトへ-, シンポジウム「遺伝子組換え技術を利用した植物の代謝制御」2012

    • Author(s)
      山口淳二
    • Organizer
      日本植物細胞分子生物学会(生駒)大会・シンポジウム
    • Place of Presentation
      奈良先端大学院大学(シンポジウム発表), 生駒市
    • Related Report
      2013 Final Research Report
  • [Presentation] ユビキチン-プロテアソームシステムによるC/N代謝制御の分子基盤-シロイヌナズナからマイクロトマトへ2012

    • Author(s)
      山口淳二
    • Organizer
      シンポジウム「遺伝子組換え技術を利用した植物の代謝制御」,日本植物細胞分子生物学会(生駒)大会・シンポジウム
    • Place of Presentation
      奈良先端大学院大学(生駒市)
    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Invited
  • [Presentation] タンパク質複合体や相互作用するタンパク質の精製・解析方法2012

    • Author(s)
      柳川由紀
    • Organizer
      第165回農林交流センターワークショップ「第25回タンパク質構造解析シリーズ・生物機能解明のためのプロテオーム解析-講義と実験-」
    • Place of Presentation
      農研機構作物研究所(つくば市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] タンパク質複合体や相互作用するタンパク質の精製,解析方法2012

    • Author(s)
      柳川由紀
    • Organizer
      第165回農林交流センターワークショップ「第25回タンパク質構造解析シリーズ・生物機能解明のためのプロテオーム解析-講義と実験-」
    • Place of Presentation
      農研機構作物研究所(つくば市)
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] Plant immunity as host resistance actions against pathogen attack -Arabidopsis NSL2 and the interacting-proteins-2011

    • Author(s)
      Yamaguchi J
    • Organizer
      Chinese Academy of Agricultural Sciences
    • Place of Presentation
      Beijing, China
    • Year and Date
      2011-10-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Metabolic regulation mediated by ubiquitin-proteasome system in Arabidopsis2011

    • Author(s)
      Yamaguchi J
    • Organizer
      Chinese Academy of Science
    • Place of Presentation
      Beijing, China
    • Year and Date
      2011-10-18
    • Related Report
      2013 Final Research Report
  • [Presentation] ゲノム科学時代の代謝研究-包括的解析と志の高い個別研究の融合を目指して : 糖代謝・輸送・センシングを例として2011

    • Author(s)
      山口淳二
    • Organizer
      「代謝とメタボロミクス」勉強会-, 新学術領域「植物の高CO2 応答」第2回若手ワークショップ
    • Place of Presentation
      休暇村支笏湖, 北海道(セミナー)
    • Related Report
      2013 Final Research Report
  • [Presentation] Plant immunity as host resistance actions against pathogen attack -Arabidopsis NSL2 and the interacting-proteins-2011

    • Author(s)
      Yamaguchi J
    • Organizer
      Plenary Lecture on 3rd International Conference on Biosciences and Biotechnology
    • Place of Presentation
      Udayana University, Bali, Indonesia
    • Related Report
      2013 Final Research Report
  • [Presentation] ユビキチンプロテアソームによるC/N応答制御~ユビキチンリガーゼATL31 とその標的を介した代謝制御2011

    • Author(s)
      佐藤長緒, 山口淳二
    • Organizer
      日本植物学会第75回大会シンポジウム「C/N バランスの研究を通して植物高CO2 応答を読み解く」
    • Place of Presentation
      東京大学駒場キャンパス, 東京都
    • Related Report
      2013 Final Research Report
  • [Presentation] プロテオミクスを用いた植物ユビキチン-プロテアソームシステムの解明-基幹代謝を例として-2011

    • Author(s)
      山口淳二, 佐藤長緒
    • Organizer
      日本プロテオーム学会新潟学会シンポジウム「植物プロテオーム研究の新展開」
    • Place of Presentation
      ホテル日航新潟, 新潟県
    • Related Report
      2013 Final Research Report
  • [Book] C/N バランス調節による植物の代謝・成長戦略 化学と生物2013

    • Author(s)
      佐藤長緒, 山口淳二
    • Related Report
      2013 Final Research Report
  • [Book] Chapter 45 Assay for proteasome-dependent protein degradation and ubiquitinated proteins in "Plant Proteomics : Methods and Protocols Second Edition" (edited by J V Jorrín Novo, S Komatsu, W Weckwerth, S Wienkoop), Methods in Molecular Biology2013

    • Author(s)
      Sato T, Sako K, Yamaguchi J
    • Publisher
      Springer Protocol, Humana Press
    • Related Report
      2013 Final Research Report
  • [Book] Frontiers in Agriculture Proteome Research (Proteomics approach to study metabolic regulation mediated by ubiquitin-proteasome system in Arabidopsis.)2013

    • Author(s)
      Yasuda S, Maekawa S, Sato T, Yamaguchi J
    • Publisher
      NARO Institute of Crop Science
    • Related Report
      2012 Annual Research Report
  • [Book] Frontiers in Agriculture Proteome Research (Cell wall proteomics of crops)2013

    • Author(s)
      S. Komatsu, Y. Yanagawa
    • Publisher
      NARO Institute of Crop Science
    • Related Report
      2012 Annual Research Report
  • [Book] Frontiers in Agriculture Proteome Research2013

    • Author(s)
      Yasuda S, Maekawa S, Sato T, Yamaguchi J
    • Publisher
      Proteomics approach to study metabolic regulation mediated by ubiquitin-proteasome system in Arabidopsis.
    • Related Report
      2011 Annual Research Report
  • [Book] Frontiers in Agriculture Proteome Research2013

    • Author(s)
      S. Komatsu, Y. Yanagawa
    • Publisher
      Cell wall proteomics of crops.
    • Related Report
      2011 Annual Research Report
  • [Book] Proteomics approach to study metabolic regulation mediated by ubiquitin-proteasome system in Arabidopsis2012

    • Author(s)
      Yasuda S, Maekawa S, Sato T, Yamaguchi J
    • Publisher
      Frontiers in Agriculture Proteome Research
    • Related Report
      2013 Final Research Report
  • [Book] 序論 : 酵母から動植物まで包括するユビキチン-プロテアソーム系の新展開2012

    • Author(s)
      山口淳二, 畠山鎮次
    • Publisher
      生化学
    • Related Report
      2013 Final Research Report
  • [Book] プロテオーム解析から解く植物のユビキチン-プロテアソーム研究(2012) 特集タイトル : 酵母から動植物まで包括するユビキチン-プロテアソーム系の新展開2012

    • Author(s)
      柳川由紀
    • Publisher
      生化学
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.sci.hokudai.ac.jp/~jjyama/keitai2/Welcome.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 山口・千葉研究室

    • URL

      http://www.sci.hokudai.ac.jp/~jjyama/keitai2/Welcome.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 山口・千葉研究室

    • URL

      http://www.sci.hokudai.ac.jp/~jjyama/keitai2/Welcome.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 山口。千葉研究室

    • URL

      http://www.sci.hokudai.ac.jp/~jjyama/keitai2/Welcome.html

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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