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Comprehensive identification of abnormally spliced RNAs and elucidation of their significance

Research Project

Project/Area Number 23510234
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genome biology
Research InstitutionKobe University

Principal Investigator

SAKAMOTO Hiroshi  神戸大学, 理学(系)研究科(研究院), 教授 (00187048)

Co-Investigator(Kenkyū-buntansha) INOUE Kunio  神戸大学, 大学院理学研究科, 教授 (40252415)
NAKAI Kenta  東京大学, 医科学研究所, 教授 (60217643)
SUZUKI Yutaka  東京大学, 大学院新領域創成科学研究科, 教授 (40323646)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsmRNA品質管理 / 生殖細胞 / エキソン連結部複合体 / 細胞質スプライシング / 線虫 / 異常スプライシング / 性決定遺伝子 / RNA品質管理 / 遺伝子 / 核酸 / ゲノム / 発現制御 / 性決定
Research Abstract

In Y14(RNAi) and mag-1(RNAi) animals, unspliced tra-2 RNA is leaked to the cytoplasm and unusually spliced to tra-2s RNA by the cytoplasmic splicing enzyme IRE-1. The protein produced from tra-2s RNA acts dominant-negatively against normal TRA-2 protein because transgenic animals expressing TRA-2s protein showed germline masculinization like Y14(RNAi) animals. Interestingly, the leakage of unspliced RNA caused by the inhibition of Y14 or MAG-1 was also observed for almost all genes examined so far. Moreover, inhibition of eIF4AIII and SAP130 also caused leakage of unspliced RNA to the cytoplasm. Double RNAi analysis indicated that Y14 interacts with both SAP130 and two other splicing-related factors. These results suggest that the EJC core subunits associate with pre-mRNA and function as the gatekeeper to watch and block premature export of unspliced RNA, thereby contributing to mRNA quality control in C. elegans.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (22 results)

All 2014 2013 2012 2011 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (15 results) Remarks (2 results)

  • [Journal Article] A specific set of EJC subunits is required for the nuclear retention of unspliced RNAs in C. elegans2013

    • Author(s)
      Masami Shiimori, KunioInoue, Hiroshi Sakamoto
    • Journal Title

      Molecular and Cellular Biology

      Volume: Jan ; 33(2) Issue: 2 Pages: 444-56

    • DOI

      10.1128/mcb.01298-12

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Developmental expression and evolution of muscle-specific microRNA s conserved in vertebrates.2013

    • Author(s)
      Saori Tani, Shigehiro Kuralcu, Hiroshi Sakamoto, Kunio Inoue and Rie Kusakabe.
    • Journal Title

      Evolution & Development

      Volume: 15 Issue: 4 Pages: 293-304

    • DOI

      10.1111/ede.12039

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish2012

    • Author(s)
      Mishima, Y., Fukao, A., Kishimoto, T., Sakamoto, H., Fujiwara, T., Inoue, K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 109 Pages: 1104-1109

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functional and direct interaction between the RNA binding protein HuD and active Akt12012

    • Author(s)
      Fujiwara, T., Fukao, A., Sasano, Y., Matsuzaki, H., Kikkawa, U., Imataka, A., Inoue, K., Endo, S., Sonenberg, N. Thoma, C., & Sakamoto, H.
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Pages: 1944-1953

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] VAB-10 spectraplakin acts in cell and nuclear migration in Caenorhabditis elegans2011

    • Author(s)
      Kim HS, Murakami R, Quintin S, Mori M, Ohkura K, Tamai KK, Labouesse M, Sakamoto H, Nishiwaki K.
    • Journal Title

      Development

      Volume: 138 Pages: 4013-4023

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 線虫C.elegansにおける生殖細胞形成に関与するクロモドメインタンパクMRG-1の局在機構の解析2014

    • Author(s)
      巳波孝至、高崎輝恒、坂本博
    • Organizer
      関西地区線虫勉強会ジョイントミーティング
    • Place of Presentation
      関西学院大学梅田キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] MRG-1 acts as an epigenome interpreter of Lys36 methylation on histone H32013

    • Author(s)
      Teruaki Takasaki, Thea Egelhofer, Andreas Rechtsteiner, Hiroshi Sakamoto, Susan Strome
    • Organizer
      The 19th International C.elegans Meeting
    • Place of Presentation
      カリフォルニア大学ロサンゼルス校(アメリカ合衆国)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫C.elegans生殖細胞におけるスプライシング関連タンパク質リン酸化酵素SPK-1の機能解析2013

    • Author(s)
      土橋匠、高崎輝恒、井上邦夫、坂本博
    • Organizer
      RNAフロンティアミーティング2013
    • Place of Presentation
      ラフォーレ修善寺 静岡県
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫C.elegansにおけるRNAの輸送経路を決める機構の解析2013

    • Author(s)
      相澤理丞、井上邦夫、坂本博
    • Organizer
      RNAフロンティアミーティング2013
    • Place of Presentation
      ラフォーレ修善寺 静岡県
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫C.elegansにおける生殖細胞形成に関与するクロマチンリモデリング因子群の局在機構の解析2013

    • Author(s)
      巳波孝至、高崎輝恒、井上邦夫、坂本博
    • Organizer
      RNAフロンティアミーティング2013
    • Place of Presentation
      ラフォーレ修善寺 静岡県
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫C.elegans生殖細胞におけるスプライシング関連因子SPK-1の機能解析2013

    • Author(s)
      土橋匠、高崎輝恒、井上邦夫、坂本博
    • Organizer
      関西地区線虫勉強会ジョイントミーティング
    • Place of Presentation
      関西学院大学梅田キャンパス
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫 EJC 中核因子 Y14はスプライシング未完了 RNA の核外輸送を防ぐ2012

    • Author(s)
      椎森仁美、井上邦夫、坂本博
    • Organizer
      第14回日本 RNA 学会年会
    • Related Report
      2013 Final Research Report
  • [Presentation] EJC core subunits have a novel gatekeeper function in mRNA quality control in the nematode C. elegans2012

    • Author(s)
      Masami Shiimori, Kunio Inoue & Hiroshi Sakamoto
    • Organizer
      The 22th CDB Meeting - RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      理研神戸CDB
    • Related Report
      2013 Final Research Report
  • [Presentation] EJC core subunits have a novel gatekeeper function in mRNA quality control in the nematode C. elegans2012

    • Author(s)
      Masami Shiimori, Kunio Inoue, Hiroshi Sakamoto
    • Organizer
      The 22th CDB Meeting - RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      理化学研究所CDB、神戸市
    • Related Report
      2012 Research-status Report
  • [Presentation] 線虫EJC中核因子Y14はスプライシング未完了RNAの核外輸送を防ぐ2012

    • Author(s)
      椎森仁美、井上邦夫、坂本博
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学百周年記念会館、仙台市
    • Related Report
      2012 Research-status Report
  • [Presentation] 線虫 Y14はイントロンを含む未スプライシング RNA の核外輸送を防ぐ2011

    • Author(s)
      椎森仁美、井上邦夫、坂本博
    • Organizer
      RNA フロンティアミーティング2011
    • Place of Presentation
      あいち健康プラザ
    • Related Report
      2013 Final Research Report
  • [Presentation] Two EJC core subunits, Y14 and MAG-1, have a novel gatekeeper function in mRNA quality control in the nematode C. elegans2011

    • Author(s)
      Masami Shiimori, Shunichi Wakabayashi, Yutaka Suzuki, Kenta Nakai, Kunio Inoue & Hiroshi Sakamoto
    • Organizer
      The16th annual Meeting of the RNA Society
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Final Research Report
  • [Presentation] Two EJC core subunits, Y14 and MAG-1, have a novel gatekeeper function in mRNA quality control in the nematode C. elegans2011

    • Author(s)
      椎森仁美
    • Organizer
      RNA2011 The16th annual Meeting of the RNA Society
    • Place of Presentation
      京都国際会館
    • Related Report
      2011 Research-status Report
  • [Presentation] 線虫Y14はイントロンを含む未スプライシングRNAの核外漏出を防ぐ2011

    • Author(s)
      椎森仁美
    • Organizer
      RNAフロンティアミーティング2011
    • Place of Presentation
      あいち健康プラザ
    • Related Report
      2011 Research-status Report
  • [Presentation] 線虫Y14はイントロンを含む未スプライシングRNAの核外漏出を防ぐ2011

    • Author(s)
      坂本博
    • Organizer
      第84回日本生化学会大会(招待講演)
    • Place of Presentation
      京都国際会館
    • Related Report
      2011 Research-status Report
  • [Remarks] ホームページ等

    • URL

      http://www.edu.kobe-u.ac.jp/fsci-biol/faculty/sakamoto.html

    • Related Report
      2013 Final Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.research.kobe-u.ac.jp/fsci-rna/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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