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Structural and functional analysis of zinc finger protein in metal binding and redox reaction

Research Project

Project/Area Number 23510266
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Living organism molecular science
Research InstitutionDoshisha Women's College of Liberal Arts

Principal Investigator

NEGI SHIGERU  同志社女子大学, 薬学部, 助教 (50378866)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords亜鉛フィンガー / 転写因子 / 金属結合 / DAN結合 / レドックス / SELEX法 / タンパク質工学 / 蛋白質 / DNA / 人工蛋白質 / 人工ヌクレアーゼ / 酸化還元 / 金属イオン / DNA結合 / シグナル伝達 / レドックスセンサー / 金属置換 / 細胞移行 / 分子進化実験 / レドックス挙動 / DNA結合 / 無細胞系タンパク質発現
Research Abstract

In this study, we tried to create metallo fingerwith Co(II) and Ni(II) to investigate its metal-binding and secondary structure, DNA-binding property and oxidation reactivity using GAGA zinc finger protein (GAGA Zf). From UV and CD data,metallo fingers have almost similar coordinate and secondary structure as wild-type GAGA Zf. In DNA-binding assay using gel shift method, metallo finger can bind to cognate DNA sequence (GAGAG). From SELEX experiment, metal-substitution has no effect on the DNA sequence selectivity. Finally, we tried to study the oxidation reactivity metallo finger. As a result of an oxidation reaction with the diamide, reactivity became the following order, that is, apo>Ni(II)>>Co(II)>Zn(II) indicating that reactivity strongly depended on the metal ion. Probably, this reactive difference caused by the difference in stability of coordinate bond and domain structure among metallo fingers.

Report

(5 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Products Report
  • Research Products

    (19 results)

All 2013 2012 2011 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (10 results) (of which Invited: 2 results) Remarks (2 results)

  • [Journal Article] Zn(II) binding and DNA binding properties of ligand-substituted CXHH-type zinc finger proteins2012

    • Author(s)
      M. Imanishi, K. Matsumura , S. Tsuji , T. Nakaya, S. Negi, S. Futaki, Y. Sugiura
    • Journal Title

      Biochemistry

      Volume: Vol.24 Pages: 3342-3348

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rational design of DNA sequence-specific zinc fingers2012

    • Author(s)
      H. Kono, M. Imanishi, S. Negi, K. Tatsutani, Y. Sakaeda, A. Hashimoto, C. Nakayama, S. Futaki, Y. Sugiura
    • Journal Title

      FEBS Lett

      Volume: Vol.586 Pages: 918-923

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Zn(II) binding and DNA binding properties of ligand-substituted CXHH-type zinc finger proteins2012

    • Author(s)
      M.Imanishi
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 16 Pages: 3342-3348

    • DOI

      10.1021/bi300236m

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rational design of DNA sequence-specific zinc fingers.2012

    • Author(s)
      Kono H, Imanishi M, Negi S, Tatsutani K, Sakaeda Y, Hashimoto A, Nakayama C, Futaki S, Sugiura Y.
    • Journal Title

      FEBS letters

      Volume: 586 Issue: 6 Pages: 918-923

    • DOI

      10.1016/j.febslet.2012.02.025

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] An arginine residue instead of a conserved leucine residue in the recognition helix of the finger 3 of Zif268 stabilizes the domain structure and mediates DNA binding2011

    • Author(s)
      S. Negi, M. Imanishi, M. Sasaki, K. Tatsutani, S. Futaki, Y. Sugiura
    • Journal Title

      Biochemistry

      Volume: Vol 50 Pages: 6266-6272

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rational design of DNA sequence-specific zinc fingers2011

    • Author(s)
      Kono H, Imanishi M, Negi S, Tatsutani K, Sakaeda Y, Hashimoto A, Nakayama C, Futaki S, Sugiura Y.
    • Journal Title

      FEBS letters.

      Volume: 586巻 Pages: 918-923

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rational design of DNA sequence-specific zinc fingers2011

    • Author(s)
      SHIGERU NEGI
    • Journal Title

      FEBS letters.

      Volume: 586 Pages: 918-923

    • Related Report
      Products Report
    • Peer Reviewed
  • [Presentation] GAGA metallo finger peptides; Its metal-binding, DNA-binding and Redox properties2013

    • Author(s)
      Shigeru Negi, Sugiura Yukio
    • Organizer
      International conference on biological inorganic chemistry (ICBIC 16)
    • Place of Presentation
      Grenoble (France)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Control of DNA Binding of Transcription Factors by an Porphyrin-Cyclodextrin Supramolecular Complex2012

    • Author(s)
      S. Negi, T. Ogasawara, H. Iede, Y. Sugiura
    • Organizer
      International Conference on Porphyrins and Phthalocyanines (ICCP7)
    • Place of Presentation
      国際コンベンションセンター(ICC)済州(Jeju, Korea)
    • Related Report
      2012 Research-status Report
  • [Presentation] GAGA Metallofinger Peptides: Its Metal-binding, DNA-binding and Redox Properties2012

    • Author(s)
      S. Negi, Y. Sugiura
    • Organizer
      The 6th Asian Biological Inorganic Chemistry Conference (AsBIC-VI)
    • Place of Presentation
      Polytechnic University(Hong Kong)
    • Related Report
      2012 Research-status Report
  • [Presentation] Study on cell penetrating of GAGA zinc finger protein2011

    • Author(s)
      SHIGERU NEGI
    • Organizer
      22^<nd> American Peptide Symposium
    • Place of Presentation
      Sheraton San Diego Hotel and Marina San Diego, CA(米国)
    • Year and Date
      2011-06-28
    • Related Report
      Products Report
  • [Presentation] Redesign strategy to create of artificial zinc finger proteins2011

    • Author(s)
      SHIGERU NEGI
    • Organizer
      22^<nd> American Peptide Symposium
    • Place of Presentation
      Sheraton San Diego Hotel and Marina San Diego, CA(米国)
    • Year and Date
      2011-06-26
    • Related Report
      Products Report
  • [Presentation] Redesign strategy to create of artificial zinc finger proteins2011

    • Author(s)
      Negi S, Sugiura Y.
    • Organizer
      22nd American Peptide Symposium
    • Place of Presentation
      Sheraton San Diego Hoteland Marina (USA)
    • Related Report
      2011 Research-status Report
  • [Presentation] Study on cell penetrating of GAGA zinc finger protein2011

    • Author(s)
      Negi S, Terada Y. Negi S.
    • Organizer
      22nd American Peptide Symposium
    • Place of Presentation
      Sheraton San Diego Hoteland Marina (USA)
    • Related Report
      2011 Research-status Report
  • [Presentation] GAGA metallo finger peptides; Its metal-binding, DNA-binding and Redox properties

    • Author(s)
      Shigeru Negi, Yukio Sugiura
    • Organizer
      International conference on biological inorganic chemistry (ICBIC 16)
    • Place of Presentation
      Grenoble
    • Related Report
      2013 Final Research Report
  • [Presentation] 亜鉛フィンガータンパク質の新しい機能に関する研究

    • Author(s)
      根木 滋、 杉浦 幸雄
    • Organizer
      第50回同志社大学理工学研究所研究発表会、2012年度学内研究センター合同シンポジウム
    • Place of Presentation
      同志社大学(京都府)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] 亜鉛フィンガータンパク質の最近の研究動向および今後の展開

    • Author(s)
      根木 滋、 杉浦 幸雄
    • Organizer
      ナノ・バイオサイエンス研究センターstart-up講演会
    • Place of Presentation
      同志社大学(京都府)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks]

    • URL

      http://research-bd.dwc.doshisha.ac.jp/rd/html/japanese/researchersHtml/2718/2718_Researcher.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 同志社女子大学 研究者データベース

    • URL

      http://research-db.dwc.doshisha.ac.jp/rd/html/japanese/index.html

    • Related Report
      2012 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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