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Design and syntheses of antibiotic acylase mutants based on 3D structure

Research Project

Project/Area Number 23510280
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemical biology
Research InstitutionToyama Prefectural University

Principal Investigator

ISOGAI Yasuhiro  富山県立大学, 工学部, 准教授 (00201921)

Co-Investigator(Renkei-kenkyūsha) YAMADA Masato  富山県立大学, 工学部・生物工学科, 助教 (40448692)
HASHIMOTO Seiji  富山県立大学, 工学部・生物工学科, 教授 (20423832)
Project Period (FY) 2011-04-28 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsアシラーゼ / 抗生物質 / モデリング / 変異体 / 基質特異性 / 変異体酵素 / エキノキャンジン / ドッキング / 変異体設計 / ホモロジーモデリング / ドッキング計算 / 酵素 / ドッキングシミュレーション / 創薬
Outline of Final Research Achievements

The antibiotic acylases are key enzymes for the industrial production of antibiotic drugs. Cephalosporin acylase (CA) is one of the most intensively studied enzymes that catalyze the deacylation of β-lactam antibiotics. On the other hand, aculeacin A acylase (AAC) is known to be an alternative acylase class catalyzing the deacylation of echinocandin compounds, but its structural and enzymatic properties remain to be explored.
In the present study, 3D homology models of AAC were constructed, and docking simulation with substrate ligands was performed for AAC. Based on the computation results, CA mutants have been designed to form the binding site for aculeacin A. Experimentally synthesized mutant enzymes exhibited lower enzymatic activity for cephalosporin but higher activity for aculeacin A, in comparison with the wild-type enzyme. The present results demonstrate the usefulness of the computational approaches for engineering the enzymatic properties of antibiotic acylases.

Report

(5 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (11 results)

All 2014 2013 2012 2011 Other

All Journal Article (5 results) (of which Peer Reviewed: 4 results) Presentation (6 results)

  • [Journal Article] Differences in the structural stability and cooperativity between monomeric variants of natural and de novo Cro proteins revealed by high pressure FTIR spectroscopy2012

    • Author(s)
      H. Imamura, Y. Isogai, M. Kato
    • Journal Title

      Biochemistry

      Volume: 51 Issue: 17 Pages: 3539-3546

    • DOI

      10.1021/bi2019223

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Efficient synthesis of optically pure alcohols by asymmetric hydrogen-transfer biocatalysis : application of engineered enzymes in a 2-propanol-water medium2012

    • Author(s)
      N.Itoh, K.Isotani, M.Nakamura, K.Inoue, Y.Isogai, Y.Makino
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 93 Issue: 3 Pages: 1075-1085

    • DOI

      10.1007/s00253-011-3447-4

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Modeling and docking of cephalosporin acylase for evaluation of the computational methods2012

    • Author(s)
      Y. Isogai, Y. Sunakawa, M. Yamada, S. Hashimoto
    • Journal Title

      Bulletin Toyama Pref. Univ.

      Volume: 22 Pages: 28-33

    • NAID

      110008915038

    • Related Report
      2011 Research-status Report
  • [Journal Article] Strain selection and scale-up fermentation for FR901379 acylase production by Streptomyces sp. No. 6907.2011

    • Author(s)
      S. Ueda, M. Kinoshita, F. Tanaka, M. Tsuboi, S. Shimizu, N. Oohata, M. Hino, M. Yamada, Y. Isogai, S. Hashimoto
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 112 Issue: 4 Pages: 409-414

    • DOI

      10.1016/j.jbiosc.2011.06.002

    • NAID

      110008761500

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cloning and expression of FR901379 acylase gene from Streptomyces sp. No. 69072011

    • Author(s)
      S. Ueda, T. Shibata, K. Ito, N. Oohata, M. Yamashita, M. Hino, M. Yamada, Y. Isogai, S. Hashimoto
    • Journal Title

      J. Antibiot.

      Volume: 64 Issue: 2 Pages: 169-175

    • DOI

      10.1038/ja.2010.151

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Design and syntheses of de novo heme proteins with an α/β fold2014

    • Author(s)
      Y. Isogai, K. Yamamoto, H. Imamura
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2014-09-24 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 3Dモデリングを利用した抗生物質アシラーゼの変異体設計2013

    • Author(s)
      中山和毅,山田雅人,西田洋巳,磯貝泰弘
    • Organizer
      第13回糸状菌分子生物学コンファレンス
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] Echinocandin B生産菌と非生産同種菌におけるNRPS遺伝子と生産能の関連性2012

    • Author(s)
      境井千佳子、山田雅人、織野陽介、大内卓也、鶴海泰久、磯貝泰弘、橋本正治
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Research-status Report
  • [Presentation] 糸状菌Coleophoma empetri F-11899株への人工アシラーゼ遺伝子の導入2012

    • Author(s)
      中谷和也、山田雅人、大内卓也、磯貝泰弘、橋本正治
    • Organizer
      第12回糸状菌分子生物学コンファレンス
    • Place of Presentation
      名古屋
    • Related Report
      2012 Research-status Report
  • [Presentation] 状菌Coleophoma empetri F-11899における異種発現のためのgpdプロモーターの単離2011

    • Author(s)
      浅井剛久、山田雅人、上田聡、磯貝泰弘、橋本正治
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都
    • Related Report
      2011 Research-status Report
  • [Presentation] 抗生物質製造酵素のモデリングによる有用変異体設計

    • Author(s)
      磯貝泰弘、山田雅人、橋本正治
    • Organizer
      富山産官学金交流会
    • Place of Presentation
      富山
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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