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Taxonomic evaluation of actinobacteria isolated from river basin and their preservation as genetic resources

Research Project

Project/Area Number 23510291
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Resource conservation science
Research InstitutionUniversity of Yamanashi

Principal Investigator

HAYAKAWA Masayuki  山梨大学, 医学工学総合研究部, 教授 (30126651)

Co-Investigator(Kenkyū-buntansha) YAMAMURA Hideki  山梨大学, 医学工学総合研究部, 助教 (70516939)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords遺伝資源 / アクチノバクテリア / 生態学 / 分類学 / 微生物
Research Abstract

Actinobacteria are a group of Gram-positive and high GC content bacteria. The aim of the present study was to establish an effective isolation method for actinobacteria from river basin and evaluate their taxonomic diversity. By using a dilution plating method with 1/5 NBRC 802 medium containing 5% NaCl, a total of 194 actinobacteria were selectively isolated from the river and seashore sediments of Iriomote Island, Okinawa, Japan. According to the 16S rDNA homology search, they classified into 6 families, 10 genera and 23 species. Microbacterium thalassium was recognized as the most predominant species. Of 194 isolates, 48 strains were considered as belonging to new species. These results suggest that the river basin is a promising genetic resource for diverse and novel actinobacteria.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (16 results)

All 2014 2013 2012 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (4 results) Remarks (4 results)

  • [Journal Article] Agromyces iriomotensis sp. nov. and Agromyces subtropicus sp. nov., isolated from soil2014

    • Author(s)
      Hamada, M., Shibata, C., Ishida, Y., Tamura, T., Yamamura, H., Hayakawa, M. & Suzuki, K.
    • Journal Title

      Int J Syst Evol Microbioll.

      Volume: 64 Pages: 833-838

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Agromyces iriomotensis sp. nov. and Agromyces subtropicus sp. nov., isolated from soil.2014

    • Author(s)
      Hamada M, Shibata C, Ishida Y, Tamura T, Yamamura H, Hayakawa M, Suzuki K.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 64 Issue: Pt_3 Pages: 833-838

    • DOI

      10.1099/ijs.0.057349-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Janibacter cremeus sp. nov., an actinobacterium isolated from sea sediment2013

    • Author(s)
      Hamada, M., Shibata, C., Tamura, T., Yamamura, H., Hayakawa, M. & Suzuki, K.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 63 Pages: 3687-3690

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Paraoerskovia sediminicola sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Paraoerskovia2013

    • Author(s)
      Hamada, M., Tamura, T., Shibata, C., Yamamura, H., Hayakawa, M., Schumann, P. & Suzuki, K.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 63 Pages: 2637-2641

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Paraoerskovia sediminicola sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Paraoerskovia.2013

    • Author(s)
      Hamada M, Tamura T, Shibata C, Yamamura H, Hayakawa M, Schumann P, Suzuki K.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 63 Issue: Pt_7 Pages: 2637-2641

    • DOI

      10.1099/ijs.0.043745-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Janibacter cremeus sp. nov., an actinobacterium isolated from sea sediment.2013

    • Author(s)
      Hamada M, Shibata C, Tamura T, Yamamura H, Hayakawa M, Suzuki K.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 63 Issue: Pt_10 Pages: 3687-9036

    • DOI

      10.1099/ijs.0.051532-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lysinimicrobium mangrovi gen. nov., sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove2012

    • Author(s)
      Hamada, M., Tamura, T., Yamamura, H., Suzuki, K. & Hayakawa, M.
    • Journal Title

      Int J Syst Evol Microbiol.

      Volume: 62 Pages: 1731-1735

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lysinimicrobium mangrovi gen. nov., sp. nov., a novel actinobacterium belonging to the family Demequinaceae isolated from mangrove rhizosphere soil2012

    • Author(s)
      Moriyuki Hamada, Tomohiko Tamura, Hideki Yamamura, Ken-ichiro Suzuki and Masayuki Hayakawa
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 62 Issue: Pt_8 Pages: 1731-1735

    • DOI

      10.1099/ijs.0.035493-0

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 河川流域及び海洋環境からのアクチノバクテリアの分離2013

    • Author(s)
      石黒圭、山村英樹、中川洋史、浜田盛之、乙黒美彩、田村朋彦、早川正幸
    • Organizer
      日本農芸化学会関東支部2013年度支部大会
    • Place of Presentation
      慶応義塾大学日吉キャンパス
    • Year and Date
      2013-11-22
    • Related Report
      2013 Final Research Report
  • [Presentation] マングローブ域土壌からのLysinimicrobium属放線菌の分離と分類学的研究2013

    • Author(s)
      浜田盛之、柴田千代、田村朋彦、小牧久幸、市川夏子、小口晃央、山村英樹、早川正幸、藤田信之、鈴木健一朗
    • Place of Presentation
      メルパルク広島
    • Related Report
      2013 Final Research Report
  • [Presentation] 河川流域及び海洋環境からのアクチノバクテリアの分離2013

    • Author(s)
      石黒圭、山村 英樹、中川 洋史、浜田 盛之、乙黒 美彩、田村 朋彦、早川 正幸
    • Organizer
      日本農芸化学会関東支部2013年度支部大会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス (横浜市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 海洋堆積物からのDemequinaceae科放線菌の分離と分類学的研究2012

    • Author(s)
      浜田盛之、田村朋彦、山村英樹、早川正幸、鈴木健一朗
    • Organizer
      日本放線菌学会大会
    • Place of Presentation
      府中の森芸術劇場
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.ccn.yamanashi.ac.jp/~hyamamura/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 山梨大学生命環境学部生命工学科 早川研究室

    • URL

      http://www.ccn.yamanashi.ac.jp/~hyamamura/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 山梨大学生命環境学部生命工学科 早川研究室

    • URL

      http://www.ccn.yamanashi.ac.jp/~hyamamura/index.html

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.ab11.yamanashi.ac.jp/ABF/No1/hayakawa/index.html

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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