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Applications of Near-Infrared Raman Optical Activity to Biological Samples

Research Project

Project/Area Number 23550019
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionSaga University

Principal Investigator

UNNO Masashi  佐賀大学, 工学(系)研究科(研究院), 准教授 (50255428)

Co-Investigator(Renkei-kenkyūsha) KAMO Naoki  松山大学, 薬学部, 教授 (10001976)
MASUDA Shinji  東京工業大学, バイオ研究基盤支援総合センター, 准教授 (30373369)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords分子分光 / 振動分光 / 生物物理 / 光受容タンパク質 / 量子化学計算 / 国際研究者交流(米国) / 分子分光学 / 生物物理学 / 国際情報交流(米国)
Research Abstract

Many biological cofactors, such as light-absorbing chromophores in photoreceptors, are intrinsically planar molecules. A protein environment, however, causes structural distortions of the cofactor, and such structural changes can lead to a modulation of chemical properties of the cofactor to maximize its biological activity. We recently applied the near-infrared ROA to bacteriorhodopsin and photoactive yellow protein. These studies demonstrated that the near-infrared excitation allows us to measure the ROA spectra of a chromophore within a protein environment. Furthermore, calculations of the ROA spectra utilizing DFT provide detailed structural information, such as data about out-of-plane distortions of the chromophore. These findings extend the applicability of ROA to many biological cofactors.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (46 results)

All 2014 2013 2012 2011 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (31 results) (of which Invited: 5 results) Remarks (2 results)

  • [Journal Article] ラマン光学活性による色素蛋白質の構造解析2014

    • Author(s)
      海野雅司
    • Journal Title

      生物物理

      Volume: 54 Pages: 39-42

    • NAID

      130003391402

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Influence of Preparation Temperature of Precursor on the Thermal Stability of TiO2(B) and its Electrochemical Property as an Anode Material in the Lithium-Ion Battery2014

    • Author(s)
      Furuya, Y., Zhao, W., Iida, T., Unno, M., & Noguchi, H
    • Journal Title

      Electrochemistry

      Volume: 82 Pages: 7-13

    • NAID

      130003387730

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Active Site Structure of Photoactive Yellow Protein with a Locked Chromophore Analogue Revealed by Near-Infrared Raman Optical Activity2013

    • Author(s)
      Kubota, K., Shingae, T., Foster, N. D., Kumauchi, M., Hoff, W. D. & Unno, M
    • Journal Title

      J. Phys. Chem. Lett

      Volume: 4 Pages: 3031-3038

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Raman Optical Activity Probing Structural Deformations of the 4-Hydroxycinnamyl Chromophore in Photoactive Yellow Protein2013

    • Author(s)
      Shingae, T., Kubota, K., Kumauchi, M., Tokunaga, F. & Unno, M
    • Journal Title

      J. Phys. Chem. Lett

      Volume: 4 Pages: 1322-1327

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Exploring the active site structure of a photoreceptor protein by Raman optical activity2013

    • Author(s)
      Unno, M., Kikukawa, T., Kumauchi, M., & Kamo, N
    • Journal Title

      J. Phys.Chem. B

      Volume: 117 Pages: 1321-1325

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Raman Optical Activity Probing Structural Deformations of the 4-Hydroxycinnamyl Chromophore in Photoactive Yellow Protein2013

    • Author(s)
      Shingae, T., Kubota, K., Kumauchi, M., Tokunaga, F. & Unno, M.
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 4 Issue: 8 Pages: 1322-1327

    • DOI

      10.1021/jz400454j

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Active Site Structure of Photoactive Yellow Protein with a Locked Chromophore Analogue Revealed by Near-Infrared Raman Optical Activity2013

    • Author(s)
      Kubota, K., Shingae, T., Foster, N. D., Kumauchi, M., Hoff, W. D. & Unno, M.
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 4 Issue: 18 Pages: 3031-3038

    • DOI

      10.1021/jz4016266

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exporing the active site site structure of a photoreceptor protein by raman optical activity2013

    • Author(s)
      Unno Masashi, kikukawa takashi, Kumauchi Masato, Kamo Naoki
    • Journal Title

      Journal of Physical Chemistry.

      Volume: 117巻 Issue: 5 Pages: 1321-325

    • DOI

      10.1021/jp4001187

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] N-terminal truncation does not affect the location of a conserved tryptophan in the BLUF domain of AppA from Rhodobacter sphaeroides2012

    • Author(s)
      Unno, M., Tsukiji, Y., Kubota, K., & Masuda, S
    • Journal Title

      J. Phys. Chem. B

      Volume: 116 Pages: 8974-8980

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic Evidence for the Formation of an N Intermediate during the Photocycle of Sensory Rhodopsin II (Phoborhodopsin) from Natronobacterium pharaonis2011

    • Author(s)
      Tateishi, Y., Abe, T., Tamogami, J., Nakao, Y., Kikukawa, T., Kamo, N., & Unno, M
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 2135-2143

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photochemistry of a Putative New Class of Sensory Rhodopsin (SRIII) coded by xop2 of Haloarcular marismortui2011

    • Author(s)
      Nakao, Y., Kikukawa, T., Shimono1, K., Tamogami1, J., Kimitsuki, N., Nara, T., Unno, M., Ihara, K., & Kamo, N
    • Journal Title

      J. Photochem. Photobiol. B

      Volume: 102 Pages: 45-54

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Raman Optical Activity of a Cyclic Dipeptide Analyzed by Quantum Chemical Calculations Combined with Molecular Dynamics Simulations

    • Author(s)
      Urago, H., Suga, T., Hirata, T., Kodama, H., Unno, M
    • Journal Title

      J. Phys. Chem. B

      Volume: (印刷中)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The electrochemical properties of low-crystallinity TiO2(B)-carbon composite as an anode material in lithium-ion battery

    • Author(s)
      Furuya, Y., Zhao, W., Unno, M., Mohuchi, T
    • Journal Title

      Electrochim. Acta

      Volume: (印刷中)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] アラニンペプチドを用いたポリ(L-プロリン)II 由来のラマン円偏光二色性スペクトルの解析2014

    • Author(s)
      古田雅和, 海野雅司, 江口貴大
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Final Research Report
  • [Presentation] Protonation state of the linear tetrapyrrole chromophore in cyanobacteriochrome RcaE revealed by resonance Raman spectroscopy2014

    • Author(s)
      Osoegawa, S., Hirose, Y., Ikeuchi, M., Unno, M
    • Organizer
      1st International Picobiology Institute Symposium, Picometer- to Micrometer-Level Structural Analyses for Studies on Functional Mechanisms of Proteins
    • Place of Presentation
      Hyogo
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Raman optical activity spectra of poly(L-proline) II helix in alanine peptides2014

    • Author(s)
      Furuta, M., Eguchi, T., Unno, M
    • Organizer
      1st International Picobiology Institute Symposium, Picometer- to Micrometer-Level Structural Analyses for Studies on Functional Mechanisms of Proteins
    • Place of Presentation
      Hyogo
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Oral, Active site structure of photoactive yellow protein with a locked chromophore analogue revealed by near infrared Raman optical activity2014

    • Author(s)
      Shingae, T., Kubota, K., Foster, N. D., Kumauchi, M., Hoff, W., Unno, M
    • Organizer
      1st International Picobiology Institute Symposium, Picometer- to Micrometer-Level Structural Analyses for Studies on Functional Mechanisms of Proteins
    • Place of Presentation
      Hyogo
    • Related Report
      2013 Final Research Report
  • [Presentation] Active site structure of photoactive yellow protein with a locked chromophore analogue revealed by near infrared Raman optical activity2014

    • Author(s)
      Shingae, T., Kubota, K., Foster, N. D., Kumauchi, M., Hoff, W., Unno, M.
    • Organizer
      1st International Picobiology Institute Symposium, Picometer- to Micrometer-Level Structural Analyses for Studies on Functional Mechanisms of Proteins
    • Place of Presentation
      Hyogo
    • Related Report
      2013 Annual Research Report
  • [Presentation] アラニンペプチドを用いたポリ(L-プロリン)II由来のラマン円偏光二色性スペクトルの解析2014

    • Author(s)
      古田雅和、海野雅司、江口貴大
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Annual Research Report
  • [Presentation] Raman Optical Activity Spectra of Poly(L-proline) II Helix in Alanine Peptides2013

    • Author(s)
      Furuta, M., Eguchi, T., Unno, M
    • Organizer
      13th Kyushu-Seibu/Pusan-Kyeongnam Joint Symposium on High Polymers (16th) and Fibers (14th) in Saga
    • Place of Presentation
      Saga
    • Year and Date
      2013-11-09
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Raman Optical Activity Probes Structural Deformations of the Chromophore in a Photoreceptor Protein2013

    • Author(s)
      Masashi Unno
    • Organizer
      2nd International Symposium on Host Compounds for Separation and Functionality in Saga
    • Place of Presentation
      Saga
    • Year and Date
      2013-07-12
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Invited
  • [Presentation] 共鳴ラマン分光法によるシアノバクテリオクローム RcaE がもつ開環テトラピロール発色団のプロトン化状態の解析2013

    • Author(s)
      小副川晋介, 広瀬侑, 池内昌彦, 海野雅司
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 近赤外ラマン円偏光二色性分光による光受容タンパク質の活性部位構造解析2013

    • Author(s)
      新ヶ江貴仁, 久保田健介, Foster, N. D., 熊内雅人, Hoff, W. D., 海野雅司
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Active Site Structure of Photoactive Yellow Protein with a Locked Chromophore Analog Revealed by Near Infrared Raman Optical Activity2013

    • Author(s)
      Shingae, T., Kubota, K., Foster, N. D., Kumauchi, M., Hoff, W. D., Unno, M
    • Organizer
      7th International Conference on Advanced Vibrational Spectroscopy
    • Place of Presentation
      Kobe
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Raman optical activity probes structural deformations of the chromophore within a protein environment2013

    • Author(s)
      UNNO, M
    • Organizer
      7th International Conference on Advanced Vibrational Spectroscopy
    • Place of Presentation
      Kobe
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Invited
  • [Presentation] 近赤外ラマン円偏光二色性分光を用いた光受容タンパク質の活性部位構造解析-発色団アナログを再構成したPhotoactive Yellow Protein への応用2013

    • Author(s)
      新ヶ江貴仁, 久保田健介, FOSTER N. D., 熊内雅人, HOFF Wouter, 海野雅司
    • Organizer
      第40回 生体分子科学討論会
    • Place of Presentation
      吹田
    • Related Report
      2013 Final Research Report
  • [Presentation] 赤外ラマン円偏光二色性分光を用いた光受容タンパク質の活性部位構造解析―発色団アナログを再構成したPhotoactive Yellow Proteinへの応用2013

    • Author(s)
      新ヶ江貴仁、久保田健介、FOSTER N. D.、熊内雅人、HOFF Wouter、海野雅司
    • Organizer
      第40回 生体分子科学討論会
    • Place of Presentation
      吹田
    • Related Report
      2013 Annual Research Report
  • [Presentation] 共鳴ラマン分光法によるシアノバクテリオクロームRcaEがもつ開環テトラピロール発色団のプロトン化状態の解析2013

    • Author(s)
      小副川晋介、広瀬侑、池内昌彦、海野雅司
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
  • [Presentation] 近赤外励起ラマン円偏光二色性分光と円二色性分光を用いた光受容タンパク質における活性部位の構造解析2012

    • Author(s)
      新ヶ江貴仁, 久保田健介, 熊内雅人, HOFF Wouter, 海野雅司
    • Organizer
      2012年 日本化学会西日本大会
    • Place of Presentation
      佐賀
    • Year and Date
      2012-11-10
    • Related Report
      2013 Final Research Report
  • [Presentation] ラマン円偏光二色分光によるジペプチドのコンフォメーション解析2012

    • Author(s)
      浦郷寛康, 菅虎雄, 兒玉浩明, 海野雅司
    • Organizer
      2012年 日本化学会西日本大会
    • Place of Presentation
      佐賀
    • Year and Date
      2012-11-10
    • Related Report
      2013 Final Research Report
  • [Presentation] Exploring the active site structure of a photoreceptor protein by Raman optical activity2012

    • Author(s)
      海野雅司
    • Organizer
      2012年 光化学討論会
    • Place of Presentation
      東京
    • Year and Date
      2012-09-14
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 環状ジペプチドのラマン円偏光二色性スペクトルの測定と解析2012

    • Author(s)
      浦郷寛康, 菅虎雄, 兒玉浩明, 海野雅司
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      横浜
    • Year and Date
      2012-03-27
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] 近赤外ラマン円偏光二色性分光法による Photoactive Yellow Proteinの構造解析2012

    • Author(s)
      新ヶ江貴仁, 久保田健介, 熊内雅人, HOFF Wouter, 海野雅司
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      日吉
    • Year and Date
      2012-03-27
    • Related Report
      2013 Final Research Report
  • [Presentation] N 末アミノ酸残基の有無は AppA BLUF ドメインの保存された トリプトファン残基の位置に影響しない2012

    • Author(s)
      海野雅司, 築地祐樹, 久保田健介, 増田真二
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] 近赤外励起ラマン円偏光二色性分光と円二色性分光を用いたPhotoactive Yellow Protein にける活性部位の構造解析2012

    • Author(s)
      新ヶ江貴仁, 久保田健介, 熊内雅人, HOFF Wouter, 海野雅司
    • Organizer
      第39回 生体分子科学討論会
    • Place of Presentation
      仙台
    • Related Report
      2013 Final Research Report
  • [Presentation] 近赤外励起ラマン円偏光二色性分光と円二色性分光を用いたPhotoactive Yellow Proteinにける活性部位の構造解析2012

    • Author(s)
      新ヶ江 貴仁、久保田 健介、熊内 雅人、HOFF Wouter、海野 雅司
    • Organizer
      第39回 生体分子科学討論会
    • Place of Presentation
      仙台
    • Related Report
      2012 Research-status Report
  • [Presentation] ラマン円偏光二色分光によるジペプチドのコンフォメーション解析2012

    • Author(s)
      浦郷寛康、菅虎雄、兒玉浩明、海野雅司
    • Organizer
      2012年 日本化学会西日本大会
    • Place of Presentation
      佐賀
    • Related Report
      2012 Research-status Report
  • [Presentation] 近赤外励起ラマン円偏光二色性分光と円二色性分光を用いた光受容タンパク質における活性部位の構造解析2012

    • Author(s)
      新ヶ江 貴仁、久保田 健介、熊内 雅人、HOFF Wouter、海野 雅司
    • Organizer
      2012年 日本化学会西日本大会
    • Place of Presentation
      佐賀
    • Related Report
      2012 Research-status Report
  • [Presentation] 近赤外ラマン円偏光二色性分光法によるPhotoactive Yellow Proteinの構造解析2012

    • Author(s)
      新ヶ江 貴仁、久保田 健介、熊内 雅人、HOFF Wouter、海野 雅司
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] Exploring the active site structure of photoactive yellow protein by Raman optical activity2011

    • Author(s)
      海野雅司
    • Organizer
      第5回アジア・オセアニア光生物学会議
    • Place of Presentation
      奈良
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ラマン円偏光二色性分光法による photoactive yellow protein の活性部位の構造解析2011

    • Author(s)
      新ヶ江貴仁, 久保田健介, 熊内雅人, 徳永史生, 海野雅司
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Related Report
      2013 Final Research Report
  • [Presentation] Exploring the active site structure of photoactive yellow protein by Raman optical activity2011

    • Author(s)
      海野雅司
    • Organizer
      第5回アジア・オセアニア光生物学会議(AOCP)(招待講演)
    • Place of Presentation
      奈良
    • Related Report
      2011 Research-status Report
  • [Presentation] Active Site Structures of photoactive yellow protein study by near-infrared Raman Optical Activity(ラマン円偏光二色性分光法による photoactive yellow proteinの活性部位の構造解析)2011

    • Author(s)
      新ヶ江貴人、久保田健介、熊内雅人、徳永史生、海野雅司
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Related Report
      2011 Research-status Report
  • [Presentation] Exploring the active site structure of a photoreceptor protein by Raman optical activity

    • Author(s)
      海野雅司
    • Organizer
      2012年光化学討論会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
    • Invited
  • [Remarks]

    • URL

      http://biophysics.chem.saga-u.ac.jp

    • Related Report
      2013 Final Research Report
  • [Remarks] 佐賀大学 海野研究室

    • URL

      http://biophysics.chem.saga-u.ac.jp

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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