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Structure and function of arabinogalactan-proteins in cell walls of higher plants

Research Project

Project/Area Number 23570048
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionSaitama University

Principal Investigator

TSUMURAYA Yoichi  埼玉大学, 理工学研究科, 教授 (10142233)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords植物細胞壁 / 細胞壁多糖 / アラビノガラクタン-プロテイン / ガラクタナーゼ / エノキタケ / ダイコン / アラビドプシス
Research Abstract

Plant cell walls consist mainly of cellulose and other polysaccharides, such as pectins and hemicelluloses as well as arabinogalactan-proteins (AGPs), a family of proteoglycans/glycoproteins. In this study, our laboratory has focused to explore a new galactanase hydrolyzing the carbohydrate moieties of AGPs in various microbial sources. We found an endo-beta-1,3-galactanase from winter mushroom and demonstrated that the enzyme is highly useful to elucidate the structure of AGPs. A model structure of the carbohydrate moieties of Arabidopsis leaf AGP has been proposed by application of several different kinds of AGP-degrading enzymes. Similar approach allowed to determine the structure of radish root AGP. We also appeared that the enzymatically degraded AGP fragments possess physiological function (elicitor activity) producing antimicrobial substances when administered to soybean cotyledons.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (32 results)

All 2014 2013 2012 2011 Other

All Journal Article (11 results) (of which Peer Reviewed: 5 results) Presentation (12 results) Book (2 results) Remarks (7 results)

  • [Journal Article] Enzymatic fragmentation of carbohydrate moieties of radish arabinogalactan-protein and elucidation of the structures2014

    • Author(s)
      R. Shimoda, K. Okabe, T. Kotake, K. Matsuoka, T. Koyama, T. Tryfona, H.-C. Liang, P. Dupree, Y. Tsumuraya
    • Journal Title

      Biosci. Biotech. Biochem.

      Volume: (in press)

    • Related Report
      2013 Final Research Report
  • [Journal Article] Enzymatic fragmentation of carbohydrate moieties of radish arabinogalactan-protein and elucidation of the structures2014

    • Author(s)
      R. Shimoda, K. Okabe, T. Kotake, K. Matsuoka, T. Koyama, T. Tryfona, H.-C. Liang, P. Dupree, Y. Tsumuraya
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 78

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aβ-glucuronosyltransferase from Arabidopsis thaliana involved in biosynthesis of type II arabinogalactan has a role in cell elongation during seedling growth2013

    • Author(s)
      Knoch, A. Dilokpimol, T. Tryfona, C.P. Poulsen, G. Xiong, J. Harholt, B.L. Petersen1, P. Ulvskov1, M.Z. Hadi, T. Kotake, Y. Tsumuraya, M. Pauly, P. Dupree, N. Geshi
    • Journal Title

      Plant J.

      Volume: 76 Pages: 1016-1029

    • Related Report
      2013 Final Research Report
  • [Journal Article] Biosynthesis of the carbohydrate moieties of arabinogalactan proteins by membrane-boundβ-glucuronosyltransferases from radish primary roots2013

    • Author(s)
      M. Endo, T. Kotake, Y. Watanabe, K. Kimura, and Y. Tsumuraya
    • Journal Title

      Planta

      Volume: 238 Pages: 1157-1169

    • Related Report
      2013 Final Research Report
  • [Journal Article] β-Galactosyl Yariv reagent binds to theβ-1,3-galactan of arabinogalactan proteins2013

    • Author(s)
      K. Kitazawa, T. Tryfona, Y. Yoshimi, Y. Hayashi, S. Kawauchi, L. Antonov, H. Tanaka, T. Takahashi, S. Kaneko, P. Dupree, Y. Tsumuraya, and T. Kotake
    • Journal Title

      Plant Physiol.

      Volume: 161 Pages: 1117-1126

    • Related Report
      2013 Final Research Report
  • [Journal Article] β-Galactosyl Yariv reagent binds to the β-1,3-galactan of arabinogalactan-proteins2013

    • Author(s)
      Kitazawa K., Tryfona T., Yoshimi Y., Hayashi Y., Kawauchi S., Antonov L., Tanaka H., Takahashi T., Kaneko S., Dupree P., Tsumuraya Y. and Kotake T
    • Journal Title

      Plant Physiol.

      Volume: 161 Issue: 3 Pages: 1117-1126

    • DOI

      10.1104/pp.112.211722

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biosynthesis of the carbohydrate moieties of arabinogalactan proteins by membrane-bound β-glucuronosyltransferases from radish primary roots2013

    • Author(s)
      M. Endo, T. Kotake, Y. Watanabe, K. Kimura, Y. Tsumuraya
    • Journal Title

      Planta

      Volume: 238 Issue: 6 Pages: 1157-1169

    • DOI

      10.1007/s00425-013-1959-0

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterisation of Arabidopsis leaf arabinogalactan polysaccharides2012

    • Author(s)
      T. Tryfona, H.-C. Liang, T. Kotake, Y. Tsumuraya, E. Stephens, and P. Dupree
    • Journal Title

      Plant Physiol.

      Volume: 160 Pages: 653-666

    • Related Report
      2013 Final Research Report
  • [Journal Article] Plant Physiology2012

    • Author(s)
      Theodora Tryfona, Hui-Chung Liang, Toshihisa Kotake, Yoichi Tsumuraya, Elaine Stephens, and Paul Dupree
    • Journal Title

      Structural characterization of Arabidopsis leaf arabinogalactan polysaccharides

      Volume: 160 Pages: 653-666

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Endo-β-1,3-galactanase from winter mushroom Flammulina velutipes2011

    • Author(s)
      T. Kotake, N. Hirata, Y. Degi, M. Ishiguro, K. Kitazawa, R. Takata, H. Ichinose, S. Kaneko, K. Igarashi, M. Samejima, and Y. Tsumuraya
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 27848-27854

    • Related Report
      2013 Final Research Report
  • [Journal Article] Endo-β-1,3-galactanase from winter mushroom Flammulina velutipes2011

    • Author(s)
      Toshihisa Kotake, Naohiro Hirata, Yuta Degi, Maki Ishiguro, Kiminari Kitazawa, Ryohei Takata, Hitomi Ichinose, Satoshi Kaneko, Kiyohiko Igarashi, Masahiro Samejima, and Yoichi Tsumuraya
    • Journal Title

      Journal of Biological Chemistry

      Volume: 286 Pages: 27848-27854

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] カラマツアラビノガラクタンにおけるβ-ヤリブ試薬の特異的相互作用部位2014

    • Author(s)
      佐藤一樹, 北澤仁成, 吉見圭永, 小竹敬久, 円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山
    • Related Report
      2013 Final Research Report
  • [Presentation] エノキタケ由来のコアタンパク質分解酵素の精製2014

    • Author(s)
      吉見圭永, 菅原優美, 金子哲, 五十嵐圭日子, 小竹敬久, 円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山
    • Related Report
      2013 Final Research Report
  • [Presentation] エノキタケ由来のコアタンパク質分解酵素の精製2014

    • Author(s)
      吉見圭永、菅原優美、金子哲、五十嵐圭日子、小竹敬久、円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山(富山大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] カラマツアラビノガラクタンにおけるβ-ヤリブ試薬の特異的相互作用部位2014

    • Author(s)
      佐藤一樹、北澤仁成、吉見圭永、小竹敬久、円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      富山(富山大学)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Specific interaction ofβ-galactosyl Yariv reagent withβ-1,3-galactan2013

    • Author(s)
      T. Kotake, K. Kitazawa, T. Tryfona, Y. Yoshimi, S. Kaneko, P. Dupree, and Y. Tsumuraya
    • Organizer
      The XI Cell Wall Meeting
    • Place of Presentation
      Nantes, France
    • Related Report
      2013 Final Research Report
  • [Presentation] β-ヤリブ試薬とAGPのβ-1,3-ガラクタンの特異的相互作用2013

    • Author(s)
      吉見圭永, 小竹敬久, 北澤仁成, T. Tryfona, 金子哲, P. Dupree, 円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山
    • Related Report
      2013 Final Research Report
  • [Presentation] Specific interaction of β-galactosyl Yariv reagent with β-1,3-galactan2013

    • Author(s)
      T. Kotake, K. Kitazawa, T. Tryfona, Y. Yoshimi, S. Kaneko, P. Dupree, Y. Tsumuraya
    • Organizer
      XI Cell Wall Meeting
    • Place of Presentation
      Nantes, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] 細胞壁グルコマンナン合成におけるKONJAC1,2の役割2012

    • Author(s)
      小竹敬久, J. Mortimer, 田島憲明, 宮崎祐一, P. Dupree, 円谷陽一
    • Organizer
      日本植物生理学会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] Structure of the sugar chains in radish arabinogalactan-protein2011

    • Author(s)
      R. Shimoda, K. Okabe, T. Kotake, K. Matsuoka, T. Koyama, H.-C. Liang, P. Dupree, Y. Tsumuraya
    • Organizer
      The 4th Conference on Biosynthesis of Plant Cell Wall
    • Place of Presentation
      Awaji, JAPAN
    • Related Report
      2013 Final Research Report
  • [Presentation] Endo-β-1,3-galactanase from winter mushroom Flammulina velutipes and its action on arabinogalactan-protein2011

    • Author(s)
      T. Kotake, N. Hirata, Y. Degi, M. Ishiguro, K. Kitazawa, R. Takata, H. Ichinose, S. Kaneko, K. Igarashi, M. Samejima, and Y. Tsumuraya
    • Organizer
      The 4th Conference on Biosynthesis of Plant Cell Wall
    • Place of Presentation
      Awaji, JAPAN
    • Related Report
      2013 Final Research Report
  • [Presentation] アラビノガラクタン-プロテイン糖鎖を分解するエンド-ガラクタナーゼ2011

    • Author(s)
      平田尚弘, 出木雄太, 北澤仁成, 高田遼平, 小竹敬久, 一ノ瀬仁美, 金子哲, 石黒真希, 五十嵐今日子, 鮫島正弘, 円谷陽一
    • Organizer
      日本糖質学会
    • Place of Presentation
      長岡
    • Related Report
      2013 Final Research Report
  • [Presentation] Endo-β-1,3-galactanase from winter mushroom Flammulina velutipes and its action on arabinogalactan-protein2011

    • Author(s)
      Toshihisa Kotake, Naohiro Hirata, Yuta Degi, Maki Ishiguro, Kiminari Kitazawa, Ryohei Takata, Hitomi Ichinose, Satoshi Kaneko, Kiyohiko Igarashi, Masahiro Samejima, and Yoichi Tsumuraya
    • Organizer
      The 4th Conference on Plant Wall Biosynthesis
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫県)
    • Related Report
      2011 Research-status Report
  • [Book] 植物細胞壁多糖2013

    • Author(s)
      円谷陽一
    • Publisher
      講談社(西谷和彦、梅澤俊明編集)
    • Related Report
      2013 Final Research Report
  • [Book] 植物細胞壁多糖2013

    • Author(s)
      分担執筆、西谷和彦、梅澤俊明 編集
    • Total Pages
      349
    • Publisher
      講談社
    • Related Report
      2013 Annual Research Report
  • [Remarks] 生体物質研究室

    • URL

      http://www.molbiol.saitama-u.ac.jp/bussitsu/index_j.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 埼玉大学 理学部 分子生物学科

    • URL

      http://www.molbiol.saitama-u.ac.jp/index.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 生体物質研究室

    • URL

      http://www.molbiol.saitama-u.ac.jp/bussitsu/index_j.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 埼玉大学 理学部 分子生物学科

    • URL

      http://www.molbiol.saitama-u.ac.jp/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 生体物質研究室

    • URL

      http://www.molbiol.saitama-u.ac.jp/bussitsu/index_j.html

    • Related Report
      2012 Research-status Report
  • [Remarks] 埼玉大学 理学部分子生物学科

    • URL

      http://www.molbiol.saitama-u.ac.jp/

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.molbiol.saitama-u.ac.jp/bussitsu/index_j.html

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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