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Structural basis of replication restart primosome proteins involved in DnaB helicase loading

Research Project

Project/Area Number 23570140
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyushu University

Principal Investigator

ABE Yoshito  九州大学, 薬学研究科(研究院), 准教授 (60315091)

Co-Investigator(Kenkyū-buntansha) KATAYAMA Tsutomu  九州大学, 大学院薬学研究院, 教授 (70264059)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords複製再開始プライモソーム / タンパク質-DNA複合体 / タンパク質構造 / DnaT / PriC / 複製再開始 / PriB / 複製開始プライモソーム / 蛋白質-DNA複合体 / 蛋白質構造
Research Abstract

We performed the structure and function analysis of PriB, DnaT and PriC proteins engaged in replication restart in Escherichia coli. PriB is a single-stranded DNA (ssDNA) binding protein. Our NMR and FRET results showed that PriB bound to ssDNA in two-step binding manner, suggesting the cooperative binding between PriB and ssDNA. We also performed domain analysis of DnaT and PriC. From the domain information of DnaT, we suggested that the N-terminal domain of DnaT was involved in trimer formation and interaction with PriB, and the C-terminal domain of DnaT was involved in ssDNA binding based on the structure determined by NMR analysis. Furthermore, the domain information of PriC suggested that the C-terminal domain of PriC was involved in the ssDNA and SSB (single-stranded DNA binding protein) binding. Additionally, we determined the N-terminal domain of PriC using NMR analysis. Together with these results, we proposed the model of replication restart in Escherichia coli.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (37 results)

All 2014 2013 2012 2011 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (20 results) Remarks (6 results)

  • [Journal Article] Involvement of histidine in complex formation of PriB and single-stranded DNA2014

    • Author(s)
      Fujiyama, S, Abe, Y, Takenawa, T, Aramaki, T, Shioi, S, Katayama, T & Ueda, T
    • Journal Title

      Biochim Biophys Acta

      Volume: 1844 Pages: 299-307

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the N-terminal domain of a replication restart primosome factor2013

    • Author(s)
      Aramaki, T, Abe, Y, Katayama, T & Ueda, T
    • Journal Title

      PriC, in Escherichia coli. Protein Sci

      Volume: 22 Pages: 1279-1286

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli2013

    • Author(s)
      Aramaki, T, Abe, Y, Ohkuri, T, Mishima, T, Yamashita, S, Katayama, T & Ueda, T
    • Journal Title

      Genes Cells

      Volume: 18 Pages: 723-732

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA2013

    • Author(s)
      Su'etsugu, M, Harada, Y, Keyamura, K, Matsunaga, C, Kasho, K, Abe, Y, Ueda, T & Katayama, T
    • Journal Title

      Environ Microbiol

      Volume: 15 Pages: 3183-3195

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of histidine in complex formation of PriB and single-stranded DNA.2013

    • Author(s)
      Fujiyama S, et al
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1844 Issue: 2 Pages: 299-307

    • DOI

      10.1016/j.bbapap.2013.10.015

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli.2013

    • Author(s)
      Aramaki T, et al
    • Journal Title

      Protein Sci.

      Volume: 22 Issue: 9 Pages: 1279-1286

    • DOI

      10.1002/pro.2314

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Domain separation and characterization of PriC ; a replication restart primosome factor in Escherichia coli.2013

    • Author(s)
      Aramaki T, et al
    • Journal Title

      Genes Cells

      Volume: 18 Issue: 9 Pages: 723-732

    • DOI

      10.1111/gtc.12069

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA2013

    • Author(s)
      Su'etsugu, M., Harada, Y., Keyamura, K., Matsunaga, C., Kasho, K., Abe, Y., Ueda, T. and Katayama, T.
    • Journal Title

      nviron. Microbiol.

      Volume: (印刷中) Issue: 12 Pages: 3183-3195

    • DOI

      10.1111/1462-2920.12147

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation and characterization of a monoclonal antibody against the refolded and functional extracellular domain of rat P2X4 receptor.2013

    • Author(s)
      Igawa, T., Higashi, S., Abe, Y., Ohkuri, T., Tanaka, H., Morimoto, S., Yamashita, T., Tsuda, M., Inoue K., Ueda, T.
    • Journal Title

      Journal of Biochemistry,

      Volume: 153(3) Issue: 3 Pages: 275-82

    • DOI

      10.1093/jb/mvs143

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mechanism forretardation of amyloid fibril formation by sugars in Va,6 protein.2013

    • Author(s)
      Abe M, Abe Y, Ohkuri T, Mishima T, Monji A, Kanba S, Ueda T.
    • Journal Title

      Protein Sci.

      Volume: 22 Issue: 4 Pages: 467-474

    • DOI

      10.1002/pro.2228

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Arg901 in the AE1 C-terminal tail is involved in conformational change but not in substrate binding2012

    • Author(s)
      Takazaki, S, Abe, Y, Yamaguchi T, Yagi M, Ueda T, Kagn D, Hamasaki N
    • Journal Title

      Biochem.Biophy.Acta

      Volume: 1819 Issue: 3 Pages: 658-665

    • DOI

      10.1016/j.bbamem.2011.11.019

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 大腸菌複製再開始因子PriCのSSB 結合およびDNA 結合に関する変異体解析2013

    • Author(s)
      荒牧峻彦, 阿部義人, 古谷香織, 片山勉, 植田正
    • Organizer
      日本生化学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 複製再開始に関わる大腸菌プライモソーム構成因子PriB・DnaT の相互作用解析2013

    • Author(s)
      藤山紗希, 阿部義人, 谷純也, 浦辺大志,片山勉, 植田正
    • Organizer
      日本生化学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Final Research Report
  • [Presentation] Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli2013

    • Author(s)
      Takahiko Aramaki, Yoshito Abe, Takatoshi Ohkuri, Tomonori Mishima, Kaori Furutani, Shoji Yamashita, Tsutomu Katayama, Tadashi Ueda
    • Organizer
      Protein Society 2013 symposium
    • Place of Presentation
      USA
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 複製再開始に関わる大腸菌プライモソーム構成因子PriB の変異体解析2012

    • Author(s)
      藤山紗希, 阿部義人, 塩井誠次郎, 竹縄太一, 片山勉, 植田正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 大腸菌プライモソーム構成因子PriC の塩基性アミノ酸残基に関する変異体解析2012

    • Author(s)
      古谷佳織, 荒牧峻彦, 阿部義人, 片山勉, 植田正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 大腸菌プライモソーム構成因子PriC のDNA 結合に関する解析2012

    • Author(s)
      荒牧峻彦, 古谷佳織, 阿部義人, 片山勉, 植田正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] 大腸菌複製再開始における分子機構の構造生物学的研究2012

    • Author(s)
      阿部義人
    • Organizer
      第38回日本応用酵素協会研究発表会
    • Place of Presentation
      大阪
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] PriC が一本鎖および二本鎖DNA いずれにも結合することの意義2012

    • Author(s)
      荒牧峻彦、阿部義人、古谷佳織、片山勉、植田正
    • Organizer
      日本タンパク質科学会
    • Place of Presentation
      名古屋
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 複製再開に関わる大腸菌プライモソーム構成因子DnaTの機能解析2012

    • Author(s)
      藤山紗季、阿部義人、谷純也、浦辺大志、片山勉、植田正
    • Organizer
      平成24 年度 日本生化学会九州支部例会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA 複製再開始因子PriC の機能解析2011

    • Author(s)
      荒牧峻彦、阿部義人、古谷佳織、片山勉、植田正
    • Organizer
      日本タンパク質科学会
    • Place of Presentation
      大阪
    • Related Report
      2013 Final Research Report
  • [Presentation] DNA複製再開始因子PriCの機能解析2011

    • Author(s)
      荒牧 峻彦、阿部 義人、古谷佳織、片山 勉、植田 正
    • Organizer
      日本タンパク質科学会
    • Place of Presentation
      大阪
    • Related Report
      2011 Research-status Report
  • [Presentation] 大腸菌複製再開始因子PriCのSSB結合およびDNA結合に関する変異体解析

    • Author(s)
      荒牧峻彦, 阿部 義人, 古谷香織, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 大腸菌細胞分裂再活性化因子CedAの機能解析

    • Author(s)
      藤崎尚規, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会九州支部例会
    • Place of Presentation
      佐賀
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA複製再開始に関わる大腸菌プライモソーム構成因子PriB・DnaTの相互作用解析

    • Author(s)
      藤山紗希, 阿部 義人, 谷純也, 浦辺大志, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli

    • Author(s)
      Takahiko Aramaki, Yoshito Abe, Takatoshi Ohkuri, Tomonori Mishima, Kaori Furutani, Shoji Yamashita, Tsutomu Katayama, Tadashi Ueda
    • Organizer
      Protein Society 2013 symposium
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA複製再開に関わる大腸菌プライモソーム構成因子DnaTの機能解析

    • Author(s)
      藤山紗季、阿部 義人、谷純也、浦辺大志、片山 勉、植田 正
    • Organizer
      平成24年度 日本生化学会九州支部例会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] PriCが一本鎖および二本鎖DNAいずれにも結合することの意義

    • Author(s)
      荒牧 峻彦、阿部 義人、古谷佳織、片山 勉、植田 正
    • Organizer
      日本タンパク質科学会
    • Place of Presentation
      名古屋
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA複製再開始に関わる大腸菌プライモソーム構成因子PriBの変異体解析

    • Author(s)
      藤山 紗希, 阿部 義人, 塩井 誠次郎, 竹縄 太一, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] 大腸菌プライモソーム構成因子PriCの塩基性アミノ酸残基に関する変異体解析

    • Author(s)
      古谷 佳織, 荒牧 峻彦, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Presentation] 大腸菌プライモソーム構成因子PriCのDNA結合に関する解析

    • Author(s)
      荒牧 峻彦, 古谷 佳織, 阿部 義人, 片山 勉, 植田 正
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Related Report
      2012 Research-status Report
  • [Remarks] PriCN 末端ドメイン構造:2RT6(DB 登録)

    • Related Report
      2013 Final Research Report
  • [Remarks] DnaTC 末端ドメイン構造:2RU8(DB 登録)

    • Related Report
      2013 Final Research Report
  • [Remarks] PriCN 末端ドメインNMR 帰属:11525(BMRB 登録)

    • Related Report
      2013 Final Research Report
  • [Remarks] DnaTC 末端ドメインNMR 帰属:11549(BMRB 登録)

    • Related Report
      2013 Final Research Report
  • [Remarks] PriB NMR 帰属:11527

    • Related Report
      2013 Final Research Report
  • [Remarks] 最近の研究室の論文

    • URL

      http://meneki.phar.kyushu-u.ac.jp/Protein/publications.html

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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