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Towards the molecular basis of the ligand-binding mechanism and drug-discovery of TAM receptor tyrosine kinases

Research Project

Project/Area Number 23570146
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

NAGATA Takashi  京都大学, エネルギー理工学研究所, 准教授 (10415250)

Co-Investigator(Kenkyū-buntansha) TAKAHASHI Hideo  横浜市立大学, その他の研究科, 教授 (60265717)
Project Period (FY) 2011-04-28 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
KeywordsTAM受容体 / NMR / 糖鎖修飾
Outline of Final Research Achievements

TAM receptor tyrosine kinases have causal relationships with diseases. We have set up the methods to obtain Tyro3 and Mer of the family using yeast K. lactis, which can potentially glycosylate the proteins; to introduce stable isotope into proteins in both uniform and selective manner; to analyze glycosylation modifications; to analyze molecular interactions; and to run and analyze several NMR methods. We have then applied these methods to Tyro3 and Mer, and evaluated the influences of glycosylation on their structures and functions. We have also obtained the methods to develop peptides and nucleic acids that bind to the target proteins, and the methods to evaluate the structure and function of the obtained molecules. On the basis of current efforts, we are going to collect structural information of TAM receptors in action, and are intending to bring the project further to elucidate the molecular mechanisms underlying the recognition of ligands or drug candidates by TAM receptors.

Report

(5 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (94 results)

All 2015 2014 2013 2012 2011

All Journal Article (22 results) (of which Peer Reviewed: 20 results,  Open Access: 5 results,  Acknowledgement Compliant: 3 results) Presentation (71 results) (of which Invited: 3 results) Book (1 results)

  • [Journal Article] Boosting of activity enhancement of K+-responsive quadruplex hammerhead ribozyme2015

    • Author(s)
      Yudai Yamaoki, Tsukasa Mashima, Takashi Nagata and Masato Katahira
    • Journal Title

      Chemical Communications

      Volume: 51 Issue: 27 Pages: 5898-5901

    • DOI

      10.1039/c5cc00961h

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination2015

    • Author(s)
      K. Kamba, T. Nagata, M. Katahira
    • Journal Title

      PLOS ONE

      Volume: 10 Issue: 4 Pages: e0124142-e0124142

    • DOI

      10.1371/journal.pone.0124142

    • NAID

      120005668069

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition2014

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, M. Kinoshita
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 11 Pages: 6861-6875

    • DOI

      10.1093/nar/gku382

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display2014

    • Author(s)
      T. Nagata, K. Shirakawa, N. Kobayashi, H. Shiheido, N. Tabata, Y. Sakuma-Yonemura, K. Horisawa, M. Katahira, N. Doi, H. Yanagawa
    • Journal Title

      PLOS ONE

      Volume: 9 Issue: 10 Pages: e109163-e109163

    • DOI

      10.1371/journal.pone.0109163

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Quantitative analysis of location- and sequence-dependent deamination by APOBEC3G using real-time NMR spectroscopy2014

    • Author(s)
      Furukawa, A., Sugase, K., Morishita, R., Nagata, T., Kodaki, T., Takaori-Kondo, A., Ryo, A., Katahira, M.
    • Journal Title

      Angew. Chem. Int. Ed. Engl.

      Volume: 53 Issue: 9 Pages: 2349-2352

    • DOI

      10.1002/anie.201309940

    • NAID

      120005647511

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure-based approach to improve a small-molecule inhibitor by the use of a competitive peptide ligand.2014

    • Author(s)
      Ono K, Takeuchi K, Ueda H, Morita Y, Tanimura R, Shimada I, Takahashi H.
    • Journal Title

      Angew Chem Int Ed Engl

      Volume: 53 Issue: 10 Pages: 2597-2597

    • DOI

      10.1002/anie.201310749

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 1H, 13C, and 15N resonance assignments of the dsRBDs of mouse RNA helicase A2013

    • Author(s)
      Takashi Nagata T, Kengo Tsuda, Naohiro Kobayashi, Peter Guntert, Shigeyuki Yokoyama, and Yutaka Muto
    • Journal Title

      Biomolecular NMR Assignment

      Volume: 7巻 Issue: 1 Pages: 69-72

    • DOI

      10.1007/s12104-012-9380-3

    • Related Report
      2013 Research-status Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rapid identification of ligand-binding sites by using an assignment-free NMR approach2013

    • Author(s)
      Kodama Y, Takeuchi K, Shimba N, Ishikawa K, Suzuki E, Shimada I, Takahashi H.
    • Journal Title

      J Med Chem

      Volume: 56 Issue: 22 Pages: 9342-9350

    • DOI

      10.1021/jm4014357

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Perdeuteration and methyl-selective (1)H, (13)C-labeling by using a Kluyveromyces lactis expression system2013

    • Author(s)
      Miyazawa-Onami M, Takeuchi K, Takano T, Sugiki T, Shimada I, Takahashi H.
    • Journal Title

      J Biomol NMR

      Volume: 57 Issue: 3 Pages: 297-304

    • DOI

      10.1007/s10858-013-9789-8

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] NMRでリガンド分子の活性部位を探索する2013

    • Author(s)
      高橋栄夫
    • Journal Title

      化学

      Volume: 68 Pages: 39-43

    • Related Report
      2013 Research-status Report
  • [Journal Article] Anti-prion activity of an RNA aptamer and its structural basis2013

    • Author(s)
      Mashima, T., Nishikawa, F., Kamatari Y. O., Fujiwara, H., Saimura, M., Nagata, T., Kodaki, T., Nishikawa, S., Kuwata, K., Katahira, M.
    • Journal Title

      Nucleic Acids Research

      Volume: 41 Issue: 2 Pages: 1355-1362

    • DOI

      10.1093/nar/gks1132

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir2012

    • Author(s)
      Ayako Furukawa, Hideyasu Okamura, Ryo Morishita, Satoko Matsunaga, Naohiro Kobayashi, Takahisa Ikegami, Tsutomu Kodaki, Akifumi Takaori-Kondo, Ryo Akihide, Takashi Nagata, Masato Katahira
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 24巻 Issue: 2 Pages: 284-289

    • DOI

      10.1016/j.bbrc.2012.07.083

    • NAID

      120004873605

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] NMR study of ligand release from asialoglycoprotein receptor under solution conditions in early endosomes2012

    • Author(s)
      Onizuka T, Shimizu H, Moriwaki Y, Nakano T, Kanai S, Shimada I, Takahashi H.
    • Journal Title

      FEBS J

      Volume: 279 Issue: 15 Pages: 2645-2656

    • DOI

      10.1111/j.1742-4658.2012.08643.x

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for the Golgi Association by the Pleckstrin Homology Domain of the Ceramide Trafficking Protein (CERT)2012

    • Author(s)
      T. Sugiki, K. Takeuchi, T. Yamaji, T. Takano, Y. Tokunaga, K. Kumagai, K. Hanada, H. Takahashi, and I. Shimada
    • Journal Title

      J. Biol. Chem.

      Volume: 287 Pages: 33706-33718

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure of Musashi1 in a complex with target RNA : The role of aromatic stacking interactions2012

    • Author(s)
      Ohyama, T., Nagata, T., Tsuda, K., Kobayashi, N., Imai, T., Okano, H., Yamazaki, T. and Katahira, M
    • Journal Title

      Nucleic Acids Res

      Volume: 10 Issue: 7 Pages: 3218-3231

    • DOI

      10.1093/nar/gkr1139

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Intelligent ribozyme that switches its activity in response to K^+ through quadruplex formation2012

    • Author(s)
      Nagata, T., Sakurai, Y., Hara, Y., Mashima, T., Kodaki, T., Katahira, M.
    • Journal Title

      FEBS Journal

      Volume: (印刷中) Issue: 8 Pages: 1456-1463

    • DOI

      10.1111/j.1742-4658.2012.08538.x

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Solution structures of the double-stranded RNA-binding domains from rna helicase A2012

    • Author(s)
      Takashi Nagata, Kengo Tsuda, Naohiro Kobayashi, Mikako Shirouzu, Takanori, Kigawa, Peter Guntert, Shigeyuki Yokoyama, and Yutaka Muto
    • Journal Title

      Proteins

      Volume: 80巻 Issue: 6 Pages: 1699-1706

    • DOI

      10.1002/prot.24059

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isotopic labeling of heterologous proteins in the yeast Pichia pastoris and Kluyveromyces lactis2012

    • Author(s)
      T. Sugiki, O. Ichikawa, M. Miyazawa-Onami, I. Shimada, and H. Takahashi
    • Journal Title

      Methods in Molecular Biology (Protein NMR techniques 3rd edit.)

      Volume: 831 Pages: 19-36

    • Related Report
      2011 Research-status Report
  • [Journal Article] An accurate pharmacophore mapping method by NMR spectroscopy2012

    • Author(s)
      Y. Mizukoshi, A. Abe, T. Takizawa, H. Hanzawa, Y. Fukunishi, I. Shimada, and H. Takahashi
    • Journal Title

      Angew. Chem. Int. Ed. 51

      Volume: 51 Pages: 1362-1365

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rapid identification of protein?protein interfaces for the construction of a complex model based on multiple unassigned signals by using time-sharing NMR measurements2011

    • Author(s)
      Y. Kodama, M. L. Reese, N. Shimba, K. Ono, E. Kanamori, V. Dotsch, S. Noguchi, Y. Fukunishi, E. Suzuki, I. Shimada and H. Takahashi
    • Journal Title

      J. Struct. Biol.

      Volume: 174 Pages: 434-442

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Protein-ligand docking guided by ligand pharmacophore-mapping experiment by NMR2011

    • Author(s)
      Y. Fukunishi, Y. Mizukoshi, K. Takeuchi, I. Shimada, H. Takahashi, and H. Nakamura
    • Journal Title

      J. Mol. Graph. Mod.

      Volume: 31 Pages: 20-27

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Affinity transfer to a human protein by CDR3 grafting of camelid VHH2011

    • Author(s)
      H. Inoue, A. Iihara, H. Takahashi, I. Shimada, I. Ishida, and Y. Maeda
    • Journal Title

      Protein Sci.

      Volume: 20 Pages: 1971-1981

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] CCND1転写抑制とテロメア短縮をもたらすTLS/FUSによる非コードRNAとDNA認識機構のNMR法による解明2014

    • Author(s)
      近藤敬子,真嶋司,山置佑大,大吉崇文,黒川理樹,永田崇,片平正人
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質RBD2の構造機能解析2014

    • Author(s)
      岩岡諒,小林直宏,津田健吾,今井貴雄,岡野栄之,永田崇,片平正人
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 実時間NMR法による抗HIV因子APOBEC3Gのスライディングにカップルした脱アミノ化機構の解析2014

    • Author(s)
      神庭圭佑,永田崇,片平正人
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] AML1 Runt domainとRNAアプタマーの相互作用のNMR解析2014

    • Author(s)
      高田健多,天野亮,永田崇,片平正人,野村祐介,田中陽一郎,中村義一,神津知子,坂本泰一
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Deamination mechanism of an anti-HIV APOBEC3G coupled with sliding on single-stranded DNA as analyzed by real-time NMR monitoring method2014

    • Author(s)
      K. Kanba, A. Furukawa, K. Sugase, T. Nagata, M. Katahira
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      北九州国際会議場(北九州市)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Creation of novel Tat-binding aptamer and ribozyme whose activities switch on in response to K+ via quadruplex formation2014

    • Author(s)
      Y. Yamaoki, T. Mashima, T. Nagata, M. Katahira
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      北九州国際会議場(北九州市)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of RNA aptamer targeting the DNA binding domain of AML1 protein2014

    • Author(s)
      K. Takada, R. Amano, Y. Tanaka, T. Nagata, M. Katahira, Y. Nakamura, T. Kozu, T. Sakamoto
    • Organizer
      The 41st International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      北九州国際会議場(北九州市)
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] 神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質の構造基盤2014

    • Author(s)
      岩岡諒,小林直宏,津田健吾,今井貴雄,岡野栄之,永田崇,片平正人
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪大学コンベンションセンター(吹田市)
    • Year and Date
      2014-11-04 – 2014-11-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] MagRO-NMRView、FLYAによる高度に自動化されたNMRデータ解析2014

    • Author(s)
      小林直宏,Bikash Ranjan Sahoo,永田崇,服部良一,Elena Schmidt,Peter Güntert,児嶋長次郎,藤原敏道
    • Organizer
      第53回NMR討論会
    • Place of Presentation
      大阪大学コンベンションセンター(吹田市)
    • Year and Date
      2014-11-04 – 2014-11-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] NMR study of the Interaction between MDM2 and a Peptide Selected by mRNA Display2014

    • Author(s)
      T. Nagata, K. Shirakawa, N. Kobayashi, H. Shiheido, N. Tabata, Y. Sakuma-Yonemura, K. Horisawa, M. Katahira, N. Doi, H. Yanagawa
    • Organizer
      Biophysical Society Thematic Meeting Disordered Motifs and Domains in Cell Control
    • Place of Presentation
      Davenport Hotel Dublin (Ireland)
    • Year and Date
      2014-10-11 – 2014-10-15
    • Related Report
      2014 Annual Research Report
  • [Presentation] NMR analysis of the interaction between an artificial RNA and a transcription factor2014

    • Author(s)
      K. Takada, R. Amano, T. Nagata, M. Katahira, Y. Nomura, Y. Tanaka, Y. Nakamura, T. Kozu, T. Sakamoto
    • Organizer
      The 5th International Symposium of Advanced Energy Science -Contribution to Zero-Emission Energy-
    • Place of Presentation
      京都大学(宇治市)
    • Year and Date
      2014-09-30 – 2014-10-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] Real-time NMR monitoring of enzymatic reaction of anti-HIV protein, structure of anti-prion RNA aptamer and wood biomass analysis2014

    • Author(s)
      Kanba, K., Mashima, T., Okamura, H., Furukawa, A., Sugase, K., Nishimura, H., Watanabe, T., Nagata, T., and Katahira, M.
    • Organizer
      The 5th Japan-Taiwan NMR symposium
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      2014-09-29 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of Tat-binding aptamer and ribozyme which switch their activities in response to K+2014

    • Author(s)
      Y. Yamaoki, T. Mashima, T. Nagata, M. Katahira
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Screening for novel aptamer against prion protein and its structural study2014

    • Author(s)
      T. Mashima, F. Nishikawa, Y.O. Kamatari, T. Nagata, S. Nishikawa, K. Kuwata, M. Katahira
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Substrate Recognition and Sliding Properities of an Anti-HIV Factor APOBEC3G analyzed by Real-time NMR Monitoring Strategy2014

    • Author(s)
      K. Kamba, T. Nagata, M. Katahira
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Functional mechanism of an anti-HIV protein, APOBEC3G, as revealed by real-time NMR monitoring of its enzymatic reaction2014

    • Author(s)
      K. Kanba, A. Furukawa, K. Sugase, R. Morishita, T. Nagata, M. Katahira
    • Organizer
      XXVIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Hyatt Regency - Dallas (USA)
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] PROPERTIES OF RNA APTAMER BINDING TO AML1 RUNT DOMAIN2014

    • Author(s)
      R. Amano, Y. Nomura, T. Nagata, N. Kobayashi, Y. Mori, K. Takada, J. Fukunaga, Y. Tanaka, M. Katahira, Y. Nakamura, T. Kozu, T. Sakamoto
    • Organizer
      XXI ROUND TABLE ON NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS
    • Place of Presentation
      Conference Centre of Poznan University of Technology (Poland)
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] カリウムイオンを感知して自らの活性をスイッチングするTat捕捉アプタマーおよびリボザイムの創製2014

    • Author(s)
      山置佑大,真嶋司,永田崇,片平正人
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      ウインクあいち(名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural and functional analysis of Musashi, a neural and oncogenic RNA-binding protein2014

    • Author(s)
      R. Iwaoka, T. Nagata, T. Imai, H, Okano, M. Katahira
    • Organizer
      第16回日本RNA学会年会
    • Place of Presentation
      ウインクあいち(名古屋市)
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] The structural and energetic basis for the high-potency inhibition of MDM2-p53 interaction by MDM2-binding peptide obtained with IVV method2014

    • Author(s)
      T. Nagata, K. Shirakawa, B.R. Sahoo, H. Shiheido, K. Horisawa, M. Katahira, N. Kobayashi, N. Doi, H. Yanagawa
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] CCND1転写抑制とテロメア短縮に関与する天然変性蛋白質TLS/FUSによる非コードRNAとDNAの認識機構のNMR法による解明2014

    • Author(s)
      近藤敬子,真嶋司,大吉崇文,黒川理樹,永田崇,片平正人
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(横浜市)
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] AML1タンパク質のRuntドメインに結合するRNAアプタマーの取得と解析2014

    • Author(s)
      高田健多,天野亮,永田崇,片平正人,中村義一,神津知子,坂本泰一
    • Organizer
      日本生化学会関東支部定例会
    • Place of Presentation
      茨木大学(水戸市)
    • Year and Date
      2014-06-14
    • Related Report
      2014 Annual Research Report
  • [Presentation] Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein2014

    • Author(s)
      Tomohiko HAYASHI, Hiraku OSHIMA, Tsukasa MASHIMA, Takashi NAGATA, Masato KATAHIRA, Masahiro KINOSHITA
    • Organizer
      58th Annual Meeting of the Biophysical Society of USA
    • Place of Presentation
      Moscone Center (USA)
    • Related Report
      2013 Research-status Report
  • [Presentation] Statistical Thermodynamics for The Molecular Recognition Accompanied by a Global Structural Change of a Molecule2014

    • Author(s)
      Tomohiko HAYASHI, Hiraku OSHIMA, Tsukasa MASHIMA, Takashi NAGATA, Masato KATAHIRA, Masahiro KINOSHITA
    • Organizer
      Nagoya Symposium on Deplection Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2013 Research-status Report
  • [Presentation] NMR実時間計測法により抗ウィルス因子APOBEC3Gのシチジン脱アミノ化反応の配列依存性を評価する2013

    • Author(s)
      神庭圭佑、 小瀧努、 永田崇、 片平正人
    • Organizer
      第13回日本蛋白質科学学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Research-status Report
  • [Presentation] プリオン蛋白質を標的とするRNAアプタマーの認識メカニズムとその抗プリオン活性2013

    • Author(s)
      真嶋司,西川富美子,鎌足雄司,藤原弘道,遠藤美紗, 永田崇,小瀧努,西川諭,桑田一夫,片平正人
    • Organizer
      第13回 日本蛋白質科学会年会
    • Place of Presentation
      とりぎん文化会館(鳥取市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 転写因子AML1を標的としたRNAアプタマーによるDNAの擬態2013

    • Author(s)
      天野亮,野村祐介,永田崇,森瑶子,福永淳一,田中陽一郎,片平正人,中村義一,神津知子,坂本泰一
    • Organizer
      第8回日本ケミカルバイオロジー学会
    • Place of Presentation
      東京医科歯科大学M&Dタワー(東京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] The deamination of APOBEC3G is controlled by the sliding-direction-dependent catalytic activity, and anti-prion activity of an RNA aptamer and its structual basis2013

    • Author(s)
      Ayako Furukawa, Kenji Sugase, Ryo Morishita, Takashi Nagata, Akifumi Takaori-Kondo, Akihide Ryo, Tsukasa Mashima, Fomiko Nishikawa, Satoshi Nishikawa, Yuji Kamatari, Kazuo Kuwata, Masato Katahira
    • Organizer
      The 10th Korea-Japan Bilateral Symposium on Biological NMR
    • Place of Presentation
      Seoul Univ. (Korea)
    • Related Report
      2013 Research-status Report
  • [Presentation] Mechanism of high affinity and anti-prion activity of anti-prion aptamer2013

    • Author(s)
      Tsukasa Mashima, Fomiko Nishikawa,Yuji O kamatari, Hiromichi Fujiwara, Masayuki Saimura, Takashi Nagata, Tsutomu Kodaki, Satoshi Nishikawa, Kazuo Kuwata, Masato Katahira
    • Organizer
      The 10th Korea-Japan Bilateral Symposium on Biological NMR
    • Place of Presentation
      Seoul Univ. (Korea)
    • Related Report
      2013 Research-status Report
  • [Presentation] カリウムイオンによって活性がスイッチングする四重鎖リボザイムの創製:四重鎖形成相補鎖によるスイッチング性能の向上2013

    • Author(s)
      山置佑大、真嶋司、永田崇、片平正人
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      ひめぎんホール(松山市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明2013

    • Author(s)
      永田 崇
    • Organizer
      新学術領域研究「天然変性タンパク質の分子認識機構と機能発現」平成24年度 第4回 領域会議
    • Place of Presentation
      ひだホテルプラザ(高山市)
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] NMR analysis of the interaction between an artificial RNA and atranscription factor2013

    • Author(s)
      Ryo Amano, Yusuke Nomura, Takashi Nagata, Naohiro Kobayashi, Yoko Mori, Junichi Fukunaga, Yoichiro Tanaka, Masato Katahira, Yoshikazu Nakamura, Tomoko Kozu, taiichi Sakamoto
    • Organizer
      The 4th International Symposium of Advanced Energy Science
    • Place of Presentation
      京都大学(宇治市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Aptamer that exerts anti-prion activity and intelligent ribozyme whose activity awitches in reponse to K+2013

    • Author(s)
      Masato Katahira, Tsukasa Mashima, Yudai Yamaoki, Takashi Nagata, Fomiko Nishikawa, Satoshi Nishikawa, Yuji Kamatari, Kazuo Kuwata
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      京都大学(京都市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Structual description for the strong binding of the peptide selected by mRNA display to MDM22013

    • Author(s)
      Takashi Nagata, Kie Shirakawa, Naohiro Kobayashi, Hirokazu Shiheido, Masato Katahira, Kenishi Horisawa, Nobuhide Doi, Hiroshi Yanagawa
    • Organizer
      5th Asia-Pacific NMR Symposium
    • Place of Presentation
      Brisbane Convention and Exhibition Centre (Australia)
    • Related Report
      2013 Research-status Report
  • [Presentation] Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein2013

    • Author(s)
      Tomohiko HAYASHI, Hiraku OSHIMA, Tsukasa MASHIMA, Takashi NAGATA, Masato KATAHIRA, Masahiro KINOSHITA
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      京都大学(京都市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Origin of the anti-prion activity of quadruplex2013

    • Author(s)
      Tsukasa Mashima, Fumiko Nishikawa, Yuji O. Kamatari, Masayuki Saimura, Takashi Nagata, Satoshi Nishikawa, Kazuo Kuwata, Masato Katahira
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry 2013
    • Place of Presentation
      神奈川大学(横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Dual-quadruplex forming ribozyme distinctly switches on its activity in response to K+2013

    • Author(s)
      Yudai Yamaoki, Tsukasa Mashima, Takashi Nagata, Masato Katahira
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry 2013
    • Place of Presentation
      神奈川大学(横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Multi-site binding of high affinity aptamer against AML1 Runt domain2013

    • Author(s)
      Ryo Amano, Yusuke Nomura, Takashi Nagata, Naohiro Kobayashi, Yoko Mori, Junichi Fukunaga, Yoichiro Tanaka, Masato Katahira, Yoshikazu Nakamura, Tomoko Kozu, Taiichi Sakamoto
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry 2013
    • Place of Presentation
      神奈川大学(横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Structural basis for the inhibition of MDM2:p53 interaction by highly selective MDM2-binding peptide obtained with IVV method2013

    • Author(s)
      Takashi Nagata, Kie Shirakawa, Naohiro Kobayashi, Hirokazu Shiheido, Masato Katahira, Kenishi Horisawa, Nobuhide Doi, Hiroshi Yanagawa
    • Organizer
      第52回日本核磁気共鳴学会
    • Place of Presentation
      石川県立音楽堂(金沢市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 神経系幹細胞の未分化状態維持に関わる Musashi1 タンパク質の機能発現の分子メカニズム2013

    • Author(s)
      岩岡諒、 櫻井悠子、 鍵矢悦久、 今井貴雄、 岡野栄之、 永田崇、 片平正人
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Development of quadruplex hammerhead ribozyme which switches on its ribozyme activity: introduction of quadruplex-forming complementary DNA to repress a basal activity2013

    • Author(s)
      Yudai Yamaoki, Tsukasa Mashima, Takashi Nagata, Masato Katahira
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 四重鎖構造を形成する核酸の抗プリオン活性2013

    • Author(s)
      真嶋司、西川富美子、鎌足雄司、才村正幸、永田崇、西川諭、桑田一夫、片平正人
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] ヒト抗ウィルス因子 APOBEC3G の基質認識機構及び Vif による APOBEC3G 阻害機構の解明に向けて2013

    • Author(s)
      神庭圭佑、永田崇、片平正人
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] mRNA ディスプレイ法により選択された高親和性MDM2結合ペプチドMIPに基づくMDM2-p53相互作用阻害剤の開発2013

    • Author(s)
      白川貴恵、永田崇、小林直弘、始平堂弘和、新倉啓介、片平正人、堀澤健一、土居信英、柳川弘志
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 転写因子AML1に対して複数の結合部位を持つ高親和性RNAアプタマーの解析2013

    • Author(s)
      天野亮、野村祐介、永田崇、森瑶子、福永淳一、田中陽一郎、片平正人、中村義一、神津知子、坂本泰一
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Related Report
      2013 Research-status Report
  • [Presentation] 抗HIV宿主因子APOBE3Gの位置依存的デアミネーション反応機構の解明2012

    • Author(s)
      古川亜矢子,菅瀬謙治,森下了,粱明秀,高折晃史,永田崇,片平正人
    • Organizer
      日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] RNAアプタマーの抗プリオン活性とその構造的基礎2012

    • Author(s)
      真嶋司,西川富美子,鎌足雄司,藤原弘道,永田崇,小瀧努,西川諭,桑田一夫,片平正人
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学(仙台市)
    • Related Report
      2012 Research-status Report
  • [Presentation] カリウムイオン濃度を感知して活性がオンになるインテリジェントリボザイムの創製2012

    • Author(s)
      山置雄大,真嶋司,櫻井佑,原ゆかり,永田崇,片平正人
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学(仙台市)
    • Related Report
      2012 Research-status Report
  • [Presentation] RNAアプタマーとAML1 Runt domainの相互作用解析2012

    • Author(s)
      天野亮,野村祐介,永田崇,福永淳一,田中陽一郎,片平正人,中村義一,神津知子,坂本泰一
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学(仙台市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Anti-prion activity of RNA aptamer and the structural basis of its high affinity to prion protein2012

    • Author(s)
      Mashima,T,Nishikawa.F,Kamatari.Y,Fugiwara.H,Nagata.T,Kodaki.T,Nishikawa.S,Kuwata.K.Katahira.M
    • Organizer
      Asia Pacific Prion symposium
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Anti-prion activity and it strucural basis of RNAaptamer, and sliding-direction-dependent deaminase activity of anti-HIV enzyme2012

    • Author(s)
      Mashima.T,Furukawa.A,Sugase.K,Fujiwara.H,Nishikawa.F,Morishita.R,Ryo.A,Kamatari.Y.Nagata.T,Nishikawa.S,Kuwata.K,Katahira.M
    • Organizer
      XXV international Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Centre (France)
    • Related Report
      2012 Research-status Report
  • [Presentation] Elucidation of the location-dependent deamination reaction mechanism of an anti-HIV factor,APOBEC3G2012

    • Author(s)
      Furukawa.A,Sugase.K.Morishita.R,Ryo.A,akaori.A,Nagata.T,Katahira.M
    • Organizer
      XXV international Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Centre (France)
    • Related Report
      2012 Research-status Report
  • [Presentation] Sequence-specific RNA-recognition mechanism of Musashi1,neural and oncogenic RNA-binding protein2012

    • Author(s)
      Ohyama.t,Nagata.t,Tsuda.k,Kobayashi.N,Imai.T,Okano.H,Yamazaki.T,Katahira.M
    • Organizer
      XXV international Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Centre (France)
    • Related Report
      2012 Research-status Report
  • [Presentation] NMR analysis of the interaction between AML1 Runt domain and RNA aptamer2012

    • Author(s)
      Amano.R,Nomura.Y,Nagata.T,Fukunaga.J.Tanaka.Y.Katahira.M,Nakamura.Y,Kozu.T.Sakamoto.T
    • Organizer
      XXV international Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Lyon Convention Centre (France)
    • Related Report
      2012 Research-status Report
  • [Presentation] カリウムイオン依存的な四重鎖構造形成によって活性がオンになるインテリジェントリボザイムの創製2012

    • Author(s)
      Y.Yamaoki, T.Mashima, Y.sakurai, Y.hara, T.Nagata, M.katahira
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] 抗HIV宿主因子 APOBEC3Gの位置依存的デアミネーション反応機構の解明2012

    • Author(s)
      A.Furukawa, K.Sugase, R.Morishita, T.Nagata, A.Takaori, A.Ryo, M.Katahira
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] NMR法によるAPOBEC3Gデアミネース活性に関する研究2012

    • Author(s)
      R.Iwaoka, S.Kitamura, K.Kanba, A.Furukawa, H.Okamura, W.Sugiura, T.Nagata, Y.Iwatani, M.Katahira
    • Organizer
      日本生物物理学会第50回年会
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] プリオンタンパク質とRNAアプタマーの相互作用及び木質バイオマスの生分解のモニタリング2012

    • Author(s)
      真嶋司、西村裕志、岡村英保、西川富美子、鎌足雄司、永田崇、西村諭、桑田一夫、渡辺隆司、片平正人
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Strctural analysisi of RNA aptamer in complex with prion protein, and its anti-prion activity2012

    • Author(s)
      T.Mashima, F,Nishikawa, Y.Kamatari, H.Fujiwara, T.Nagata, T.Kodaki, S.Nishikawa, K.Kuwata. M.Katahira
    • Organizer
      The 39th Internaional Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Development of intelligent ribozyme whose activity switches on in response to K+via quadruplex formation2012

    • Author(s)
      Y.Yamaoki, T.Mashima, Y.sakurai, Y.hara, T.Nagata, M.katahira
    • Organizer
      The 39th Internaional Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      名古屋大学(名古屋市)
    • Related Report
      2012 Research-status Report
  • [Presentation] NMR Real-time Monitoring of the Deamination Reaction of Human Antiviral Factor APOBEC3G2012

    • Author(s)
      K.Kamba, A.Furukawa, T.Kodaki, T.Nagata, M.Katahira
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Creation of Novl Ribozyme whose Activity Switches on in Response to K+ via Quadruples Formation2012

    • Author(s)
      Y.Yamaoki, T.Mashima, Y.Sakurai, Y.Hara, T.Kodaki, T.Nagata, M.Katahira
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] NMR approach for ligand-based drug discovery: DIRECTION approach for the pharmacophore mapping of drug candidates2012

    • Author(s)
      H. Takahashi
    • Organizer
      The 3rd International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      理研横浜研究所(横浜市)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Pharmaceutical NMR techniques: NMR approach for ligand-based drug discovery2012

    • Author(s)
      H. Takahashi
    • Organizer
      Pharmaceutical NMR lecture series in Osaka
    • Place of Presentation
      大阪大学(吹田市)
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] NMRによるタンパク質相互作用とそのアロステリック阻害機構の解明2012

    • Author(s)
      高橋栄夫
    • Organizer
      第35回日本分子生物学会年会・ワークショップ「NMRで見る タンパク質の機能発現」
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] XMRV プロテアーゼのNMR による構造解析2011

    • Author(s)
      古川亜矢子、松永智子、岩岡諒、永田崇、小林直宏、高折晃史、森下了、梁明秀、片平正人
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(吹田)
    • Related Report
      2011 Research-status Report
  • [Presentation] リアルタイムモニタリングによって示されたAPBEC3GによるDNA上の極性を有したスライディン2011

    • Author(s)
      M.Katahira, A.Furukawa, T. Nagata, H. Takaku, R. Morishita, A. Takaori, A. Ryo
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学(姫路)
    • Related Report
      2011 Research-status Report
  • [Presentation] r(GGA)4 chimeric ribozyme switches its activity in responseto K+ via quadruplex formation2011

    • Author(s)
      T. Nagata, Y. Sakurai, Y. Hara, T. Mashima, M. Katahira
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Research-status Report
  • [Presentation] Real-time monitoring of the cytidine deamination along single-stranded DNA by an anti-HIV2011

    • Author(s)
      A. Furukawa, K. Sugase, R. Morishita, T. Nagata, A. Ryo, A. Takaori, M. Katahira
    • Organizer
      The International Symposium on Nuclear Magnetic Resonance 2011
    • Place of Presentation
      大桟橋ホール(横浜)
    • Related Report
      2011 Research-status Report
  • [Presentation] Structural basis for the sequence-specific RNA-recognition mechanism of Musashi 12011

    • Author(s)
      T. Ohyama, T. Nagata, K. Tsuda, N. Kobayashi, T. Imai, H. Okano, T. Yamazaki, M. Katahira
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Related Report
      2011 Research-status Report
  • [Presentation] MagRO-Assign: a tool for automated sequence specific assignment of chemical shifts for NMR signals of protein backbone2011

    • Author(s)
      N. Kobayashi, A. Furukawa, S. Kitazawa, T. Nagata, R. Kitahara, M. Katahira, T. Fujiwara
    • Organizer
      EUROMAR2011
    • Place of Presentation
      Campus Westend (Frankfurt, Germany)
    • Related Report
      2011 Research-status Report
  • [Book] 生体有機化学2012

    • Author(s)
      高橋栄夫
    • Total Pages
      220
    • Publisher
      東京化学同人
    • Related Report
      2012 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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