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Elucidation of the true picture of the hemoglobin allosteric equilibrium

Research Project

Project/Area Number 23570197
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionJichi Medical University

Principal Investigator

SHIBAYAMA Naoya  自治医科大学, 医学部, 教授 (20196439)

Co-Investigator(Renkei-kenkyūsha) PARK Sam-yong  横浜市立大学, 大学院医科学研究科, 教授 (20291932)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2013: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Keywordsヘモグロビン / アロステリー / X線結晶構造解析 / 酸素平衡曲線 / 2状態モデル / 2状態モデル / X線結晶構造解析
Research Abstract

The molecular mechanisms of protein allostery have been attributed to the two-state transition between T (tense) and R (relaxed) states, based largely on the knowledge about hemoglobin (Hb). However, an equilibrium ensemble for solution Hb cannot be adequately described by just these two states. Here we report an unprecedented crystal form in which Hb is free to adopt any allosteric structure, depending on the conditions, and at the same time allows oxygen binding to be monitored directly in the crystal. We identify nine conformations including a new intermediate between T and R. Our findings give a comprehensive picture of the equilibrium conformers and transition pathway for Hb.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (12 results)

All 2014 2013 2012 2011 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (6 results) Remarks (2 results)

  • [Journal Article] Capturing the Hemoglobin Allosteric Transition in a Single Crystal Form2014

    • Author(s)
      Naoya Shibayama, Kanako Sugiyama, Jeremy R. H. Tame, and Sam-Yong Park.
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 136 (13) Issue: 13 Pages: 5097-5105

    • DOI

      10.1021/ja500380e

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Symmetry Distortion in the Human Hemoglobin Tetramer Induced by Asymmetric Ligation2012

    • Author(s)
      Naoya Shibayama.
    • Journal Title

      FEBS Letters

      Volume: 586(1) Issue: 1 Pages: 74-78

    • DOI

      10.1016/j.febslet.2011.11.027

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structures and Oxygen Affinities of Crystalline Human Hemoglobin C (β6 Glu→Lys) in the R and R2 Quaternary Structures2011

    • Author(s)
      Naoya Shibayama, Kanako Sugiyama, and Sam-Yong Park.
    • Journal Title

      J. Biol. Chem.

      Volume: 286(38) Issue: 38 Pages: 33661-33668

    • DOI

      10.1074/jbc.m111.266056

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structures and oxygen affinities of crystalline human hemoglobin C (β6 Glu→Lys) in the R and R2 quaternary structures2011

    • Author(s)
      Naoya Shibayama, Kanako Sugiyama, and Park Sam-Yong
    • Journal Title

      Journal of Biological Chemistry

      Volume: 286 Pages: 33661-33668

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 単一結晶形中でのヘモグロビンのアロステリック転移2013

    • Author(s)
      柴山修哉
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      2013-10-29
    • Related Report
      2013 Final Research Report
  • [Presentation] Hemoglobin allosteric transition in a single crystal form2013

    • Author(s)
      Naoya Shibayama
    • Organizer
      日本生物物理学会第51回年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
  • [Presentation] ヘモグロビンのアロステリック平衡のリアルな描像2012

    • Author(s)
      柴山修哉, 朴三用
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス
    • Year and Date
      2012-09-24
    • Related Report
      2013 Final Research Report
  • [Presentation] ヘモグロビンのアロステリック平衡のリアルな描像2012

    • Author(s)
      柴山修哉
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Research-status Report
  • [Presentation] 2種類のリラックス状態ヘモグロビン結晶の機能比較2011

    • Author(s)
      柴山修哉
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学・姫路書写キャンパス
    • Year and Date
      2011-09-16
    • Related Report
      2013 Final Research Report
  • [Presentation] 2種類のリラックス状態ヘモグロビン結晶の機能比較2011

    • Author(s)
      柴山修哉
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://www.jichi.ac.jp/news/research/2013/20140327.html

    • Related Report
      2013 Final Research Report
  • [Remarks] [医学部] ヘモグロビンのアロステリック転移の全容解明に成功しました

    • URL

      http://www.jichi.ac.jp/news/research/2013/20140327.html

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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