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The differential analyses of tRNA splicing processes among the three domains of life

Research Project

Project/Area Number 23570208
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionGifu University

Principal Investigator

YOKOGAWA Takashi  岐阜大学, 工学部, 教授 (90242304)

Co-Investigator(Renkei-kenkyūsha) OHNO Satoshi  岐阜大学, 工学部, 助教 (10345796)
Research Collaborator NOMURA Yuichiro  岐阜大学, 大学院工学研究科, 大学院生
KUNO Miyuki  岐阜大学, 大学院工学研究科, 大学院生
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordstRNA / tRNAリガーゼ / スプライシング / 古細菌 / EndA / RtcB / イントロン / 低分子環状RNA / アーケオシン / ArcTGT / BHBモチーフ
Research Abstract

In Archaea and Eucarya, some tRNA genes contain introns. Since the precursor tRNA (pre-tRNA) is not functional in protein biosynthesis, exact removal of introns must be essential. Recently, it was found that the RtcB catalyzes the ligation of exons derived from the pre-tRNA. RtcB also seems to catalyze the circulation of intron from pre-tRNA. In fact, we found the circularized intron in methanogenic archaeon, Methanosarcina acetivorans, cells. Whereas the circularized intron has any function or not, we believe it would be functional because of the following facts. First, the circularized intron was stable in M. acetivorans cells. Second, RtcB even exists in bacterial cells that any tRNA gene does not contain intron. In future, we would like to discover the functions of small circularized RNAs.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (7 results)

All 2013 2011

All Journal Article (3 results) (of which Peer Reviewed: 3 results) Presentation (4 results)

  • [Journal Article] A simple system for expression of proteins containing 3-azidotyrosine at a pre-determined site in Escherichia coli.2013

    • Author(s)
      Ikeda-Boku, A., Ohno, S., Hibino, Y., Yokogawa, T., Hayashi, N., Nishikawa, K.
    • Journal Title

      J. Biochem.

      Volume: 153 Issue: 3 Pages: 317-326

    • DOI

      10.1093/jb/mvs153

    • NAID

      40019589671

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Protein fishing using magnetic nanobeads containing calmodulin site-specifically immobilized via an azido group.2013

    • Author(s)
      Ikeda-Boku, A., Kondo, K., Ohno, S., Yoshida, E., Yokogawa, T., Hayashi, N., Nishikawa, K.
    • Journal Title

      J. Biochem.

      Volume: 154 Issue: 2 Pages: 159-165

    • DOI

      10.1093/jb/mvt038

    • NAID

      40019731100

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Purification and comparison of native and recombinant tRNA-guanine transglycosylases from Methanosarcina acetivorans.2013

    • Author(s)
      Nomura, Y, Onda, Y, Ohno, S, Taniguchi, H, Ando, K, Oka, N, Nishikawa, K, Yokogawa, T
    • Journal Title

      Protein Expr. Purif.

      Volume: 88 Issue: 1 Pages: 13-19

    • DOI

      10.1016/j.pep.2012.11.009

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Methanosarcina acetivorans由来tRNA-guanine transglycosylaseにおける天然型および組換え型酵素の精製とその比較2013

    • Author(s)
      能村友一朗
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      松山市
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] tRNAのスプライシングによって生じる環状RNAはM. acetivorans細胞内で安定に存在している2013

    • Author(s)
      久野美由紀
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      松山市
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Methanosarcina acetivoransのイントロン含有tRNA前駆体と結合するタンパク質群の解析2011

    • Author(s)
      横川隆志
    • Organizer
      24回Archaea研究会
    • Place of Presentation
      鶴岡市
    • Year and Date
      2011-09-03
    • Related Report
      2013 Final Research Report
  • [Presentation] Methanosarcina acetivoransのイントロン含有tRNA前駆体と結合するタンパク質群の解析2011

    • Author(s)
      横川隆志
    • Organizer
      24回Archaea研究会
    • Place of Presentation
      鶴岡
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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