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Molecular mechanisms and evolutionary origin of the robustness in vertebrate development

Research Project

Project/Area Number 23570256
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Developmental biology
Research InstitutionNagahama Institute of Bio-Science and Technology (2013)
Nara Institute of Science and Technology (2011-2012)

Principal Investigator

OGINO HAJIME  長浜バイオ大学, バイオサイエンス学部, 教授 (10273856)

Co-Investigator(Renkei-kenkyūsha) OCHI Haruki  山形大学, 医学部教育研究支援センター, 助教 (00505787)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords発生・分化 / 進化 / ゲノム / 発現制御 / 遺伝子 / 国際情報交換 / フランス
Research Abstract

In this study, we attempted to reveal molecular mechanisms that confer robustness to vertebrate development, and its evolutionary origin, by studying the regulation of paralogs generated by ancient whole genome duplications. In case of Nr2f-paralogs, we found that Nr2f1, Nr2f2, Nr2f5 and Nr2f6, show partially overlapping expression in the eye and brain, and three pairs of enhancers generated by the genome duplication are still conserved between Nr2f1 and Nr2f2. Regarding Pax2 and Pax5 paralogs, an ancestral-type sequence of their expression-compensation enhancers was identified in the cephalochordate amphioxus.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (46 results)

All 2014 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 1 results) Presentation (32 results) (of which Invited: 5 results) Book (4 results) Remarks (4 results)

  • [Journal Article] Essential roles of epithelial bone morphogenetic protein signaling during prostatic development2014

    • Author(s)
      A. Omori, S. Miyagawa, Y. Ogino, M. Harada, K. Ishii, Y. Sugimura, H. Ogino, N. Nakagata and G. Yamada
    • Journal Title

      Endocrinology

      Volume: 155 Issue: 7 Pages: 2534-44

    • DOI

      10.1210/en.2013-2054

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Loss of cell-extracellular matrix interaction triggers retinal regeneration accompanied by Rax and Pax6 activation.2013

    • Author(s)
      Nabeshima A, Nishibayashi C, Ueda Y, Ogino H, Araki M
    • Journal Title

      Genesis.

      Volume: 51 Issue: 6 Pages: 410-419

    • DOI

      10.1002/dvg.22378

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues.2012

    • Author(s)
      Ochi, Haruki
    • Journal Title

      Nature Communications

      Volume: 3 Issue: 1 Pages: 848-848

    • DOI

      10.1038/ncomms1851

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Comparative expression analysis of the H3K27 demethylases, JMJD3 and UTX, with the H3K27 methylase, EZH2, in Xenopus.2012

    • Author(s)
      Kawaguchi, Akane
    • Journal Title

      International Journal of Developmental Biology

      Volume: 56 Issue: 4 Pages: 295-300

    • DOI

      10.1387/ijdb.113360ak

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Transcription factors involved in lens development from the preplacodal ectoderm.2012

    • Author(s)
      Ogino, Hajime
    • Journal Title

      Developm ental Biology

      Volume: 363 Issue: 2 Pages: 333-347

    • DOI

      10.1016/j.ydbio.2012.01.006

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Different requirement for Wnt/β-catenin signaling in limb regeneration of larval and adult Xenopus.2011

    • Author(s)
      Yokoyama Hitoshi
    • Journal Title

      PLoS One

      Volume: 6(7) Issue: 7 Pages: e21721-e21721

    • DOI

      10.1371/journal.pone.0021721

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2014

    • Author(s)
      Ogino H
    • Organizer
      International symposium:Frontiers in Amphibian biology:Endangered species conservation and genome editing
    • Place of Presentation
      東広島市広島大学
    • Year and Date
      2014-03-27
    • Related Report
      2013 Final Research Report
  • [Presentation] Six2とLhx1の腎幹細胞での発現を調節するシス配列の探索2013

    • Author(s)
      佐々木裕子
    • Organizer
      第7回日本ツメガエル研究集会
    • Place of Presentation
      山口県美祢市
    • Year and Date
      2013-09-24
    • Related Report
      2013 Final Research Report
  • [Presentation] パラログ形成に伴うシス調節配列の進化2013

    • Author(s)
      荻野肇
    • Organizer
      国立遺伝学研究所研究集会「新機能獲得の分子進化」
    • Place of Presentation
      三島市
    • Year and Date
      2013-08-17
    • Related Report
      2013 Final Research Report
  • [Presentation] パラログ形成に伴うシス調節配列の進化2013

    • Author(s)
      荻野肇
    • Organizer
      第3回Tokyo Vertebrate Morphology Meeting
    • Place of Presentation
      東京都慈恵医科大学
    • Year and Date
      2013-08-10
    • Related Report
      2013 Final Research Report
  • [Presentation] Role of Six1 in evolution of vertebrate primary sensory system2013

    • Author(s)
      Kawakami K
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江市
    • Year and Date
      2013-05-29
    • Related Report
      2013 Final Research Report
  • [Presentation] The cis-regulatory evolution for developmental robustness and stress response2013

    • Author(s)
      Ochi H
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江市
    • Year and Date
      2013-05-29
    • Related Report
      2013 Final Research Report
  • [Presentation] 組織特異的なサイレンサーの獲得によるパラログの発現パターンの多様化2012

    • Author(s)
      荻野肇
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡市
    • Year and Date
      2012-12-11
    • Related Report
      2013 Final Research Report
  • [Presentation] ゲノム倍化が引き起こす遺伝子発現調節機構の進化2012

    • Author(s)
      荻野肇
    • Organizer
      第24回高遠・分子細胞生物学シンポジウム
    • Place of Presentation
      長野県伊那市
    • Year and Date
      2012-08-23
    • Related Report
      2013 Final Research Report
  • [Presentation] パラログ形成にともなうシス調節機構の進化2012

    • Author(s)
      越智陽城
    • Organizer
      日本進化学会14回大会
    • Place of Presentation
      東京都八王子市
    • Year and Date
      2012-08-23
    • Related Report
      2013 Final Research Report
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2012

    • Author(s)
      Ogino H
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2012-05-31
    • Related Report
      2013 Final Research Report
  • [Presentation] Paralogous enhancers:a crossover point between developmental robustness and stress response2012

    • Author(s)
      Ochi H
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2012-05-29
    • Related Report
      2013 Final Research Report
  • [Presentation] Conservation and diversification of cis-regulatory mechanisms of the pax2/5/8 paralog group in chordates2011

    • Author(s)
      Ochi H
    • Organizer
      American Society for Cell Biology Annual Meeting
    • Place of Presentation
      Denver Colorado USA
    • Year and Date
      2011-12-04
    • Related Report
      2013 Final Research Report
  • [Presentation] Scarless wound healing of Xenopus laevis -as a prerequisite for epimorphic regeneration2011

    • Author(s)
      Yokoyama H
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2011-05-19
    • Related Report
      2013 Final Research Report
  • [Presentation] A H3K27 demethylase Jmjd3, is essential for Xenopus eye development2011

    • Author(s)
      Kawaguchi A
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2011-05-18
    • Related Report
      2013 Final Research Report
  • [Presentation] Conservation and diversification of cis-regulatory mechanisms of the pax2/5/8 paralog group in chordates.2011

    • Author(s)
      Ochi, H., Tamai, T., Kawaguchi, A., Sudou, N. and Ogino, H.
    • Organizer
      American Society for Cell Biology Annual Meeting
    • Place of Presentation
      Denver, Colorado, USA
    • Related Report
      2011 Research-status Report
  • [Presentation] エピジェネティック因子Jmjd3による異所的な細胞分化と器官形成の促進.2011

    • Author(s)
      須藤則広,越智陽城,川口 茜,荻野 肇
    • Organizer
      第5回日本ツメガエル研究集会
    • Place of Presentation
      静岡県熱海市
    • Related Report
      2011 Research-status Report
  • [Presentation] ツメガエルの初期発生におけるヒストンH3メチル化因子と脱メチル化因子の機能解析.2011

    • Author(s)
      川口 茜,越智陽城,須藤則広,荻野 肇
    • Organizer
      第5回日本ツメガエル研究集会
    • Place of Presentation
      静岡県熱海市
    • Related Report
      2011 Research-status Report
  • [Presentation] 組織特異的サイレンサーの獲得によるパラログ遺伝子の発現の多様化.2011

    • Author(s)
      越智陽城,玉井智子,長野紘樹,川口 茜,須藤則広,荻野 肇
    • Organizer
      第5回日本ツメガエル研究集会
    • Place of Presentation
      静岡県熱海市
    • Related Report
      2011 Research-status Report
  • [Presentation] Scarless wound healing of Xenopus laevis -as a prerequisite for epimorphic regeneration.2011

    • Author(s)
      Yokoyama, H., Maruoka, T., Ochi, H., Aruga, A., Amano, T., Shiroishi, T., Ogino, H. and Tamura, S.
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Related Report
      2011 Research-status Report
  • [Presentation] A H3K27 demethylase, Jmjd3, is essential for Xenopus eye development.2011

    • Author(s)
      Kawaguchi, A., Ochi, H., Sudou, N. and Ogino, H.
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Related Report
      2011 Research-status Report
  • [Presentation] A pair of duplicated enhancers controls both a fail-safe regulation for development and adaptation to environmental stress.2011

    • Author(s)
      Ochi, H., Uchiyama, C., Kawaguchi, A., Tamai, T. and Ogino, H.
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Related Report
      2011 Research-status Report
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues.

    • Author(s)
      Ogino, H.
    • Organizer
      International symposium: Frontiers in Amphibian biology: Endangered species conservation and genome editing
    • Place of Presentation
      広島県東広島市 広島大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Six2とLhx1の腎幹細胞での発現を調節するシス配列の探索.

    • Author(s)
      佐々木裕子,田村友佳,星島和幸,荻野 肇,越智陽城
    • Organizer
      第7回日本ツメガエル研究集会
    • Place of Presentation
      山口県美祢市 秋吉台国際芸術村
    • Related Report
      2013 Annual Research Report
  • [Presentation] パラログ形成に伴うシス調節配列の進化.

    • Author(s)
      荻野 肇
    • Organizer
      国立遺伝学研究所 研究集会「新機能獲得の分子進化」
    • Place of Presentation
      静岡県三島市 国立遺伝学研究所
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] パラログ形成に伴うシス調節配列の進化.

    • Author(s)
      荻野 肇
    • Organizer
      第3回 Tokyo Vertebrate Morphology Meeting
    • Place of Presentation
      東京都 慈恵医科大学
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Role of Six1 in evolution of vertebrate primary sensory system.

    • Author(s)
      Kawakami, K., Yajima, H., Suzuki, M., Ochi, H., Ikeda, K., Sato, S., Ogino, H. and Ueno, N.
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      島根県松江市 くにびきメッセ
    • Related Report
      2013 Annual Research Report
  • [Presentation] The cis-regulatory evolution for developmental robustness and stress response.

    • Author(s)
      Ochi, H., Kawaguchi, A., Sudou, N., Hoshijima, K. and Ogino, H.
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      島根県松江市 くにびきメッセ
    • Related Report
      2013 Annual Research Report
  • [Presentation] 組織特異的なサイレンサーの獲得によるパラログの発現パターンの多様化

    • Author(s)
      荻野 肇
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2012 Research-status Report
  • [Presentation] ゲノム倍化が引き起こす遺伝子発現調節機構の進化

    • Author(s)
      荻野 肇
    • Organizer
      第24回 高遠・分子細胞生物学シンポジウム
    • Place of Presentation
      長野県伊那市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] パラログ形成にともなうシス調節機構の進化

    • Author(s)
      越智陽城
    • Organizer
      日本進化学会第14回東京大会
    • Place of Presentation
      東京都八王子市
    • Related Report
      2012 Research-status Report
    • Invited
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues.

    • Author(s)
      Ogino, Hajime
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2012 Research-status Report
  • [Presentation] Paralogous enhancers: a crossover point between developmental robustness and stress response.

    • Author(s)
      Ochi, Haruki
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Related Report
      2012 Research-status Report
  • [Book] New Principles in Developmental Processes, Springer2014

    • Author(s)
      Ochi, H, Kawaguchi A, and Ogino, H
    • Publisher
      Differential use of paralogous genes via evolution of cis-regulatory elements for divergent expression specificities
    • Related Report
      2013 Final Research Report
  • [Book] New Principles in Developmental Processes2014

    • Author(s)
      Ochi, H., Kawaguchi, A. and Ogino, H.
    • Total Pages
      317
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Methods in Molecular Biology, Xenopus Protocols, 2nd edition:Post-Genomic Approaches, Humana press2012

    • Author(s)
      Ogino H, Ochi H, Uchiyama C, Louie S, and Grainger R M
    • Publisher
      Comparative genomics-based identification and analysis of cis-regulatory elements
    • Related Report
      2013 Final Research Report
  • [Book] Comparative genomics-based identification and analysis of cis-regulatory elements (in Methods in Molecular Biology, Vol. 917, Xenopus Protocols, 2nd edition: Post-Genomic Approaches)2012

    • Author(s)
      Ogino, Hajime
    • Publisher
      Humana press
    • Related Report
      2012 Research-status Report
  • [Remarks] 長浜バイオ大学教員の紹介(荻野 肇)

    • URL

      http://www.nagahama-i-bio.ac.jp/guide/kyoin/detail/post-10.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 報道関連情報 雑誌論文③(Nature Communications誌に発表したゲノム倍化と遺伝子進化の研究) の意義を伝えた記事

    • URL

      http://sankei.jp.msn.com/west/west_life/news/120525/wlf12052516310018-n1.htm

    • Related Report
      2013 Final Research Report
  • [Remarks] 教員の紹介(荻野 肇)|長浜バイオ大学

    • URL

      http://www.nagahama-i-bio.ac.jp/guide/kyoin/detail/post-10.html

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://bsgcoe.naist.jp/ogino/

    • Related Report
      2011 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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