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The translation inactivation in the pseudogenization process of chloroplast genes

Research Project

Project/Area Number 23570276
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionNagoya University (2013)
Nagoya City University (2011-2012)

Principal Investigator

NAKAMURA Masayuki  名古屋大学, 遺伝子実験施設, 研究員 (60322145)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords葉緑体 / 翻訳 / 共生 / リボソームタンパク質 / in vitro翻訳系
Research Abstract

Plants have evolved in the direction of decreasing chloroplast genes. It remains unclear the pseudogenization process of chloroplast genes. In many higher plants, the gene for chloroplast ribosomal protein S16, rps16, is encoded not only by the nuclear genome but also by the chloroplast genome. Thus, it is possible that the pseudogenization of chloroplast rps16 gene is in progress. In this study, we found that the rps16 gene in tobacco chloroplasts is well transcribed and its transcript is correctly spliced, but mRNA is not translated. Furthermore, we determined the cis-regulatory element for translation inactivation of rps16 mRNA in tobacco chloroplasts. From these results, the translation inactivation may be the one of the triggers to become the pseudogenes in the chloroplast genome.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (28 results)

All 2014 2013 2012 2011

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (27 results) (of which Invited: 1 results)

  • [Journal Article] Plastid-to-nucleus retrograde signals are essential for expression of nuclear starch biosynthesis genes during amyloplast differentiation in tobacco BY-2 cultured cells2011

    • Author(s)
      Kazuhiko Enami
    • Journal Title

      Plant Physiology

      Volume: 157 Issue: 1 Pages: 518-530

    • DOI

      10.1104/pp.111.178897

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] タバコ葉緑体rps16 mRNAの翻訳抑制にかかわるシス配列の同定2014

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第55回日本植物生理学会年会
    • Place of Presentation
      富山
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 葉緑体リボソームS16タンパク質をコードするrps16 mRNAの翻訳抑制にかかわるシス配列の同定2013

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] 葉緑体リボソームS16タンパク質をコードするrps16遺伝子の翻訳抑制2013

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      日本植物学会第77回大会
    • Place of Presentation
      札幌
    • Related Report
      2013 Annual Research Report 2013 Final Research Report
  • [Presentation] Chloroplast-encoded rps16 mRNA is translationally repressed in tobacco2013

    • Author(s)
      Nakamura, M
    • Organizer
      12th International Colloquium on Endocytobiology and Symbiosis
    • Place of Presentation
      Halifax
    • Related Report
      2013 Final Research Report
  • [Presentation] The expression of the gene for chloroplast ribosomal priten S16 is translationally repressed in tobacco2013

    • Author(s)
      Nakamura, M. and Sugiura, M
    • Organizer
      FEBS Congress 2013
    • Place of Presentation
      Petersburg
    • Related Report
      2013 Final Research Report
  • [Presentation] タバコ葉緑体rps16 mRNAの翻訳抑制因子の探索2013

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第54回日本植物生理学会年会
    • Place of Presentation
      岡山
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] The expression of the gene for chloroplast ribosomal priten S16 is translationally repressed in tobacco.2013

    • Author(s)
      Nakamura, M. and Sugiura, M.
    • Organizer
      FEBS Congress 2013
    • Place of Presentation
      St. Petersburg
    • Related Report
      2013 Annual Research Report
  • [Presentation] Chloroplast-encoded rps16 mRNA is translationally repressed in tobacco.2013

    • Author(s)
      Nakamura, M.
    • Organizer
      12th International Colloquium on Endocytobiology and Symbiosis
    • Place of Presentation
      Halifax
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] タバコ葉緑体rps16 mRNAの翻訳抑制機構の解析2012

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Related Report
      2013 Final Research Report 2012 Research-status Report
  • [Presentation] Translation inhibition of rps16 mRNA in tobacco chloroplasts is caused by the 5'untranslated region2012

    • Author(s)
      Nakamura, M. and Sugiura, M.
    • Organizer
      Gordon Research Conferences Mitochondria and Chloroplasts
    • Place of Presentation
      Smithfield
    • Related Report
      2013 Final Research Report
  • [Presentation] 遺伝子重複領域内のATG開始コドンが転写状態に与える影響について2012

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 高等植物において遺伝子コード領域の存在は転写型ジーンサイレンシングを抑制する2012

    • Author(s)
      松尾充啓、佐藤壮一郎、工藤久幸、安井孝彰、中邨真之、木村宏、山本義治、小保方潤一
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] タバコ葉緑体rps16 mRNAの翻訳抑制のin vitro解析2012

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] Translation inhibition of rps16 mRNA in tobacco chloroplasts is caused by the 5’ untranslated region.2012

    • Author(s)
      Nakamura, M. and Sugiura, M.
    • Organizer
      Gordon Research Conferences; Mitochondria and Chloroplasts
    • Place of Presentation
      Smithfield
    • Related Report
      2012 Research-status Report
  • [Presentation] タバコ葉緑体rps16 mRNAの翻訳抑制のin vitro解析2012

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都産業大学(京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] 高等植物において遺伝子コード領域の存在は転写型ジーンサイレンシングを抑制する2012

    • Author(s)
      松尾充啓、佐藤壮一郎、工藤久幸、安井孝彰、中邨真之、木村宏、山本義治、小保方潤一
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都産業大学(京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] 遺伝子重複領域内のATG開始コドンが転写状態に与える影響について2012

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都産業大学(京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] 遺伝子重複領域内のATG開始コドンの保存性が転写状態の持続性に及ぼす影響について2011

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2013 Final Research Report
  • [Presentation] Analysis of the gene for chloroplast 30S ribosomal protein S16 in tobacco2011

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2013 Final Research Report
  • [Presentation] 植物の核ゲノムにはATG開始コドンを介したプロモーター機能領域の出現メカニズムがある2011

    • Author(s)
      松尾充啓、佐藤壮一郎、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      日本遺伝学会83回大会
    • Place of Presentation
      京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 植物ゲノム上でのプロモーター機能領域の出現に対するATG開始コドンの役割2011

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] rps16 gene in tobacco chloroplasts is well transcribed and its transcript is correctly spliced, but mRNA is not translated2011

    • Author(s)
      Nakamura, M. and Sugiura, M
    • Organizer
      The EMBO Meeting 2011
    • Place of Presentation
      Vienna
    • Related Report
      2013 Final Research Report
  • [Presentation] rps16 gene in tobacco chloroplasts is well transcribed and its transcript is correctly spliced, but mRNA is not translated.2011

    • Author(s)
      Nakamura, M. and Sugiura, M.
    • Organizer
      The EMBO Meeting 2011
    • Place of Presentation
      Austria Center Vienna (Vienna)
    • Related Report
      2011 Research-status Report
  • [Presentation] 植物ゲノム上でのプロモーター機能領域の出現に対するATG開始コドンの役割2011

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学(東京)
    • Related Report
      2011 Research-status Report
  • [Presentation] 植物の核ゲノムにはATG開始コドンを介したプロモーター機能領域の出現メカニズムがある2011

    • Author(s)
      松尾充啓、佐藤壮一郎、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      日本遺伝学会83回大会
    • Place of Presentation
      京都大学(京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] Analysis of the gene for chloroplast 30S ribosomal protein S16 in tobacco2011

    • Author(s)
      中邨真之、杉浦昌弘
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Related Report
      2011 Research-status Report
  • [Presentation] 遺伝子重複領域内のATG開始コドンの保存性が転写状態の持続性に及ぼす影響について2011

    • Author(s)
      佐藤壮一郎、松尾充啓、工藤久幸、木村宏、中邨真之、山本義治、小保方潤一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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