Evaluation of domestication-related genes in rice - Trait examination in the genetic background of wild rice

• Project/Area Number: 23580006
• Research Category: Grant-in-Aid for Scientific Research (C)
• Allocation Type: Multi-year Fund
• Section: 一般
• Research Field: Breeding science
• Research Institution: Kobe University
• Principal Investigator: ISHII TAKASHIGE 神戸大学, (連合)農学研究科(研究院), 教授 (20260648)
• Project Period (FY): 2011 – 2013
• Project Status: Completed (Fiscal Year 2013)
• Budget Amount: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000); Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000); Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000); Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
• Keywords: イネ / 栽培化 / 野生イネ

Research Abstract

In order to investigate important loci for rice domestication, QTL analysis of domestication-related traits was carried out with four backcross recombinant inbred populations derived from the reciprocal crosses between two rice cultivars (Japonica and Indica types) and an Asian wild rice accession. The results suggest that QTLs, commonly detected in the two populations having cultivated or wild genetic backgrounds, may have played important roles in the early phase of rice domestication.

Research Products

• [Journal Article] OsLG1 regulates a closed panicle trait in domesticated rice (2013)
  • Author(s): Takashige Ishii
  • Journal Title: Nature Genetics Volume: 45 Issue: 4 Pages: 462-465
  • DOI: 10.1038/ng.2567
  • Peer Reviewed
• [Journal Article] Estimation of the outcrossing rate for annual Asian wild rice under field conditions (2012)
  • Author(s): Phuong Dang Thai Phan, Hiroki Kageyama, Ryo Ishikawa, Takashige Ishii
  • Journal Title: Breeding Science Volume: 62 Issue: 3 Pages: 256-262
  • DOI: 10.1270/jsbbs.62.256
  • NAID: 130004057166
  • ISSN: 1344-7610, 1347-3735
  • Peer Reviewed
• [Journal Article] Evaluation of genetic variation among wild populations and local varieties of rice (2011)
  • Author(s): Ishii T, Hiraoka T, Kanzaki T, Akimoto M, Shishido R, Ishikawa R
  • Journal Title: Rice Volume: 4 Issue: 3-4 Pages: 170-177
  • DOI: 10.1007/s12284-011-9067-x
  • Peer Reviewed
• [Journal Article] Temporal changes of seed shattering degree of substitution lines having non-shattering alleles from cultivated rice (Oryza sativa) in the genetic background of wild rice (O. rufipogon) (2011)
  • Author(s): Htun TM, Ishii T, Ishikawa R
  • Journal Title: Journal of Crop Research Volume: 56 Pages: 39-44
  • NAID: 110008711270
  • Peer Reviewed
• [Journal Article] QTL analysis for submergence avoidance using backcross recombinant inbred lines between Oryza sativa and O rufipogon. (2011)
  • Author(s): Phan PDT, Thanh PT, Mori N, Ishikawa R, Ishii T
  • Journal Title: Journal of Crop Research Volume: 56 Pages: 45-49
  • NAID: 110008711271
  • Peer Reviewed
• [Journal Article] Development of backcross recombinant inbred lines between Oryza sativa Nipponbare and O. rufipogon and QTL detection on drought tolerance (2011)
  • Author(s): Pham Thien Thanh
  • Journal Title: Breeding Science Volume: 61 Issue: 1 Pages: 76-79
  • DOI: 10.1270/jsbbs.61.76
  • NAID: 130004146291
  • ISSN: 1344-7610, 1347-3735
  • Peer Reviewed
• [Journal Article] Temporal changes of seed shattering degree of substitution lines having non-shattering alleles from cultivated rice (Oryza sativa) in the genetic background of wild rice (O. rufipogon) (2011)
  • Author(s): Than Myint Htun, Takashige Ishii, Ryo Ishikawa
  • Journal Title: Journal of Crop research Volume: 56 Pages: 39-44
  • NAID: 110008711270
  • Peer Reviewed
• [Journal Article] QTL analysis for submergence avoidance using backcross recombinant inbred lines between Oryza sativa and O. rufipogon. (2011)
  • Author(s): Phuong Dang Thai Phan, Pham Thien Thanh, Naoki Mori, Ryo Ishikawa, Takashige Ishii
  • Journal Title: Journal of Crop research Volume: 56 Pages: 45-49
  • NAID: 110008711271
  • Peer Reviewed
• [Presentation] 野生イネ(Oryza rufipogon)の遺伝的背景における栽培化関連形質の評価 (2014)
  • Author(s): 西村彬則,岩崎友哉,山本知佳,石川亮,石井尊生
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
  • Year and Date: 2014-03-22
• [Presentation] 野生イネ(Oryza rufipogon)の遺伝的背景における種子脱粒性遺伝子座間の相互作用 (2014)
  • Author(s): 井上千鶴,Htun TM,石井尊生,石川亮
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
  • Year and Date: 2014-03-22
• [Presentation] Identification of a quantitative trait locus involved in abscission layer formation for seed shattering in Asian wild rice, Oryza rufipogon (2014)
  • Author(s): Htun TM, Inoue C, Chhourn O, Ishii T, Ishikawa R
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
  • Year and Date: 2014-03-22
• [Presentation] Closed panicles in rice domestication. (2013)
  • Author(s): Ishii T, Numaguchi K, Miura K, Yoshida K, Thanh PT, Htun TM, Yamasaki M, Matsumoto T, Terauchi R, Ishikawa R, Ashikari M
  • Organizer: 7th International Rice Genetics Symposium
  • Place of Presentation: Manila, Philippines
  • Year and Date: 2013-11-06
• [Presentation] A closed panicle trait regulated by OsLG1 in domesticated rice, Oryza sativa L (2013)
  • Author(s): Ishikawa R, Miura K, Yoshida K, Numaguchi K, Htun TM, Thanh PT, Matsumoto T, Yamasaki M, Terauchi R, Ashikari M, Ishii T
  • Organizer: Symposium
  • Place of Presentation: Manila, Philippines
  • Year and Date: 2013-11-06
• [Presentation] 穂が閉じることによって野生イネはどう変化したか? (2013)
  • Author(s): 沼口孝司,Htun TM,Thanh PT,石川亮,石井尊生
  • Organizer: 日本育種学会第124回講演会
  • Place of Presentation: 鹿児島大学
  • Year and Date: 2013-10-12
• [Presentation] Evaluation of genetic variation among wild populations and local varieties of rice in Vietnam (2012)
  • Author(s): Ishii T
  • Organizer: Rice Symposium : Trends in Rice Research to Overcome Stresses in a context of Climate Change
  • Place of Presentation: Hanoi, Vietnam
  • Year and Date: 2012-09-06
• [Presentation] Evaluation of genetic variation among wild populations and local varieties in rice (2011)
  • Author(s): Ishii T
  • Organizer: Rice and Language across Asia Symposium
  • Place of Presentation: Cornel University, USA
  • Year and Date: 2011-09-24
• [Presentation] Evaluation of genetic variation among wild populations and local varieties in rice. (2011)
  • Author(s): Takashige Ishii
  • Organizer: Rice and Language across Asia Symposium(招待講演)
  • Place of Presentation: Cornell University, USA
• [Presentation] 穂が閉じることによって野生イネはどう変化したか？
  • Author(s): 沼口 孝司、Htun Than Myint、Thanh Pham Thien、石川 亮、石井 尊生
  • Organizer: 日本育種学会第124回講演会
  • Place of Presentation: 鹿児島大学
• [Presentation] Closed panicles in rice domestication
  • Author(s): Ishii T, Numaguchi K, Miura K, Yoshida K, Thanh PT, Htun TM, Yamasaki M, Matsumoto T, Terauchi R, Ishikawa R, Ashikari M
  • Organizer: International Rice Genetics Symposium
  • Place of Presentation: Manila, Philippines
• [Presentation] A closed panicle trait regulated by OsLG1 in domesticated rice, Oryza sativa L.
  • Author(s): Ryo Ishikawa, Kotaro Miura, Kentaro Yoshida, Koji Numaguchi, Than Myint Htun, Pham Thien Thanh, Takashi Matsumoto, Masanori Yamasaki, Ryohei Terauchi, Motoyuki Ashikari, Takashige Ishii
  • Organizer: International Rice Genetics Symposium
  • Place of Presentation: Manila, Philippines
• [Presentation] 野生イネ(Oryza rufipogon)の遺伝的背景における種子脱粒性遺伝子座間の相互作用
  • Author(s): 井上 千鶴、Than Myint Htun、石井 尊生、石川 亮
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
• [Presentation] 野生イネ(Oryza rufipogon)の遺伝的背景における栽培化関連形質の評価
  • Author(s): 西村 彬則、岩崎 友哉、山本 知佳、石川 亮、石井 尊生
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
• [Presentation] Identification of a quantitative trait locus involved in abscission layer formation for seed shattering in Asian wild rice, Oryza rufipogon
  • Author(s): Than Myint Htun, Chizuru Inoue, Orn Chhourn, Takashige Ishii, Ryo Ishikawa
  • Organizer: 日本育種学会第125回講演会
  • Place of Presentation: 東北大学
• [Presentation] Evaluation of genetic variation among wild populations and local varieties of rice in Vietnam
  • Author(s): Takashige Ishii
  • Organizer: Rice Symposium: Trends in Rice Research to Overcome Stresses in a context of Climate Change
  • Place of Presentation: Vietnam Academy of Agricultural Sciences Headquarter, Hanoi, Vietnam.
  • Invited
• [Remarks] 雑誌論文①(Nature Genetics 45: 462-465)のイネの栽培化のきっかけとなった遺伝子の同定に関する研究結果について
  • URL: http://www.kobe-u.ac.jp/research/news/archive/pp2013_02_25.html
• [Remarks] 新聞報道
• [Remarks] 平成25年3月8日朝日新聞「稲作起源のイネ遺伝子?」
• [Remarks] 平成25年4月29日産経新聞「起源は中国珠江流域か栽培化の引き金も判明」
• [Remarks] 神戸大学ホームページ(研究ニュース)
• [Remarks] ライフサイエンス新着論文レビュー
  • URL: http://first.lifesciencedb.jp/archives/6663