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Development of an isolation method of microsatellite DNA markers for evaluation of genetic diversity of organisms in rural areas

Research Project

Project/Area Number 23580340
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Irrigation, drainage and rural engineering/Rural planning
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

KOIZUMI Noriyuki  独立行政法人農業・食品産業技術総合研究機構, 農村工学研究所・資源循環工学研究領域, 主任研究員 (60301222)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsマイクロサテライトDNA / 遺伝子多様性 / 農村生態系 / 遺伝的多様性 / DNA
Research Abstract

An isolation method of microsatellite DNA markers was developed for the evaluation of genetic diversity of organisms inhabiting rural areas. This method was composed of five processes such as DNA extraction, DNA fragmentation, screening of microsatellite regions, etc. Applying this method, nineteen to forty of novel microsatellite DNA markers were isolated and characterized for seven species of fish, dragonfly and mysid collected from agricultural canals. Furthermore, these markers were available for practical analysis of their genetic diversity and the structures of their populations. The development of the markers for other species based on this method and the investigation of genetic diversity using the developed markers are expected in the near future.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (16 results)

All 2013 2012 2011

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (5 results) Book (1 results)

  • [Journal Article] Characterization of twenty-four polymorphic microsatellite loci of Rasbora borapetensis2013

    • Author(s)
      Koizumi, N., Morioka, S., Mori, A.(他5名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 5 Issue: 3 Pages: 711-71

    • DOI

      10.1007/s12686-013-9888-6

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of nineteen novel polymorphic microsatellite loci of Clupeichthys aesarnensis2013

    • Author(s)
      Koizumi, N., Morioka, S., Mori, A.(他5名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 5 Issue: 3 Pages: 707-709

    • DOI

      10.1007/s12686-013-9887-7

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thirty-two polymorphic microsatellite loci of the mysid crustacean Mesopodopsis tenuipes.2013

    • Author(s)
      Koizumi N. et al.
    • Journal Title

      Conservation Genet Resour

      Volume: 4 Issue: 1 Pages: 55-58

    • DOI

      10.1007/s12686-011-9470-z

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 40 polymorphic microsatellite markers from Parambassis siamensis2012

    • Author(s)
      Koizumi, N., Morioka, S., Quinn, T. W.(他5名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 4 Issue: 4 Pages: 1031-1035

    • DOI

      10.1007/s12686-012-9700-z

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development and characterization of 29 polymorphic microsatellite loci for Esomus metallicus2012

    • Author(s)
      Koizumi, N., Morioka, S., Quinn, T. W.(他5名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 4 Issue: 4 Pages: 1027-1030

    • DOI

      10.1007/s12686-012-9699-1

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Trends and future subjects of research on fish ecology, conservation and management in agricultural canals and ditches.2012

    • Author(s)
      小出水規行・西田一也・水谷正一
    • Journal Title

      Ecology and Civil Engineering

      Volume: 15 Issue: 2 Pages: 281-286

    • DOI

      10.3825/ece.15.281

    • NAID

      130004541667

    • ISSN
      1344-3755, 1882-5974
    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development and characterization of 23 polymorphic microsatellite markers for Sympetrum frequens2012

    • Author(s)
      Koizumi, N., Quinn, T. W., Jinguji, H.(他4名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 4 Issue: 1 Pages: 67-70

    • DOI

      10.1007/s12686-011-9476-6

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] 農村生態系保全に向けてのドジョウとカラドジョウの簡易な種判別式2012

    • Author(s)
      小出水規行・森淳・水谷正一(他3名)
    • Journal Title

      農村工学研究所技報

      Volume: 212 Pages: 167-175

    • NAID

      40019326106

    • URL

      http://www.naro.affrc.go.jp/publicity_report/publication/files/212_1-10.pdf

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of 21 polymorphic microsatellite loci in the Japanese dace (Tribolodon hakonensis)2011

    • Author(s)
      Koizumi, N., Quinn, T. W., Park, M.(他5名)
    • Journal Title

      Conservation Genetics Resources

      Volume: 3 Issue: 3 Pages: 565-567

    • DOI

      10.1007/s12686-011-9405-8

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Origin of the two major distinct mtDNA clades of the Japanese population of the oriental weather loach Misgurnus anguillicaudatus (Teleostei : Cobitidae)2011

    • Author(s)
      Kitagawa, T., Fujii, Y. and Koizumi, N.
    • Journal Title

      Folia Zoologica

      Volume: 60 Pages: 343-349

    • URL

      http://www.ivb.cz/folia/60/4/11_114-2010.pdf

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Development of a simple method of discrimination between the Dojo and Kara-dojo loaches for the conservation of Japan's rural ecosystem2013

    • Author(s)
      Koizumi, N., Nishida, K., Mori, A.(他2名)
    • Organizer
      Proceedings of PAWEES 2013 (12th) International Conference, 59-66
    • Place of Presentation
      Cheongju, South Korea
    • Year and Date
      2013-10-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Investigation of population genetic diversity of common small fish in the Mekong River Basin, Vientiane, Lao PDR, for conserving native fishes2013

    • Author(s)
      Koizumi, N., Morioka, S., Mori, A.(他4名)
    • Organizer
      Abstract book of 26th International Congress for Conservation Biology, 111-112
    • Place of Presentation
      Baltimore, Maryland, USA
    • Year and Date
      2013-07-22
    • Related Report
      2013 Final Research Report
  • [Presentation] Genetic diversity and population structure of small freshwater fish in Mekong River Basin2012

    • Author(s)
      Koizumi, N., Morioka, S., Mori, A.(他4名)
    • Organizer
      Proceedings of PAWEES 2012 International Conference, 013KOI
    • Place of Presentation
      Nonthaburi, Thailand
    • Year and Date
      2012-11-28
    • Related Report
      2013 Final Research Report
  • [Presentation] Genetic diversity and population structure of small freshwater fish in Mekong River Basin2012

    • Author(s)
      N. Koizumi, S. Morioka, A. Mori, B. Vongvichith, K. Nishida, K. Watabe and T. Takemura
    • Organizer
      PAWEES 2012 Int. Con.
    • Place of Presentation
      Bangkok, Thailand
    • Related Report
      2012 Research-status Report
  • [Presentation] 生息場形成に求められる農業水路の生態機能2011

    • Author(s)
      小出水規行
    • Organizer
      応用生態工学会第15回研究発表会
    • Place of Presentation
      金沢学院大学
    • Related Report
      2011 Research-status Report
  • [Book] Genetic diversity and population structure of the Hotoke loach, Lefua echigonia, a Japanese endangered loach. Ed by Baptista, G. R., An Integrated View of the Molecular Recognition and Toxinology - From Analytical Procedures to Biomedical Applications2013

    • Author(s)
      Koizumi, N., Mizutani, M., Watabe, K(他3名)
    • Publisher
      InTech
    • Related Report
      2013 Final Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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