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The study on molecular functions of the novel RNAi factors DRH-3 and E1 which are required to maintain the chromosome integrity in higher eukaryote

Research Project

Project/Area Number 23590074
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biological pharmacy
Research InstitutionToyohashi University of Technology

Principal Investigator

EKI Toshihiko  豊橋技術科学大学, 工学(系)研究科(研究院), 教授 (40192512)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2011: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywordsダイサー関連ヘリカーゼ / RNA干渉 / 線虫 / タンパク質機能解析 / ヘリカーゼ
Research Abstract

This study has aimed to clarify the molecular function of two RNAi factors DRH-3 (Dicer Related Helicase-3) and E1 (a novel protein with two Tudor domains) that I originally found to be indispensable for germ-line formation in C. elegans. In this study, I generated the DNA constructs for expression of 10 mutated proteins and successfully prepared His- and GST-tagged-native and some of mutated versions of DRH-3 and E1 proteins using the E. coli protein expression system, and showed the physical interaction between DRH-3 and E1 by pull-down method with differently tagged-native proteins. In addition, genetic and cytological observations on both genes have suggested that DRH-3 and E1 proteins act in the same pathway of RNAi in nucleus.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (35 results)

All 2014 2013 2012 2011 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (17 results) Book (12 results) Remarks (1 results)

  • [Journal Article] Trapping DNA replication origins from the human genome.2013

    • Author(s)
      Eki T, Murakami Y, Hanaoka F
    • Journal Title

      Genes (Basel)

      Volume: 4 Issue: 2 Pages: 198-225

    • DOI

      10.3390/genes4020198

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Profiling nematode communities in unmanaged flowerbed and agricultural field soils in Japan by DNA barcode sequencing2012

    • Author(s)
      Hisashi Morise, Erika Miyazaki, Shoko Yoshimitsu, and Toshihiko Eki
    • Journal Title

      PLoS One

      Volume: 7(12), e51785 Issue: 12 Pages: 12-12

    • DOI

      10.1371/journal.pone.0051785

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Detection of DNA damages in Saccharomyces cerevisiae caused by non-thermal atmospheric pressure plasmas2011

    • Author(s)
      Hiroki Yamaguchi, Hachiro Yasuda, Toshihiko Eki, Hirofumi Kurita, Kazunori Takashima, and Akira Mizuno
    • Journal Title

      J. Inst. Electrostat. Jpn

      Volume: 35(1) Pages: 8-13

    • NAID

      10027798639

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sensitive detection of chemical-induced genotoxicity by the Cypridina secretory luciferase reporter assay using DNA repair-deficient strains of Saccharomyces cerevisiae2011

    • Author(s)
      Yukari Ochi, Harumi Sugawara, Mio Iwami, Megumi Tanaka and Toshihiko Eki
    • Journal Title

      Yeast

      Volume: 28(4) Pages: 265-278

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 出芽酵母への大気圧低温プラズマ曝露におけるDNA 損傷の検出2011

    • Author(s)
      山口広輝,安田八郎,浴 俊彦,栗田弘史,高島和則,水野彰
    • Journal Title

      静電気学会誌

      Volume: 35巻 Pages: 8-13

    • NAID

      10027798639

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 線虫の染色体動態制御に関与する新規Tudorドメインタンパク質の調製と解析2014

    • Author(s)
      洲崎和真
    • Organizer
      日本薬学会第134回年会
    • Place of Presentation
      熊本市総合体育館(熊本市)
    • Year and Date
      2014-03-28
    • Related Report
      2013 Final Research Report
  • [Presentation] 線虫の染色体動態制御に関与する新規Tudorドメインタンパク質の調製と解析2014

    • Author(s)
      洲崎和真, 渡部周二, 吉政 隆, 浴 俊彦
    • Organizer
      日本薬学会第134回年会
    • Place of Presentation
      熊本市総合体育館(熊本県熊本市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 染色体動態制御に必須な線虫RNA干渉タンパク質DRH-3の分子機能解析2013

    • Author(s)
      渡部周二
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(神戸市)
    • Year and Date
      2013-12-03
    • Related Report
      2013 Final Research Report
  • [Presentation] 染色体動態制御に必須な線虫RNA干渉タンパク質DRH-3の機能解析2013

    • Author(s)
      渡部周二
    • Organizer
      第77回日本生化学会中部支部例会・シンポジウム
    • Place of Presentation
      名古屋大学(名古屋市)
    • Year and Date
      2013-05-25
    • Related Report
      2013 Final Research Report
  • [Presentation] 染色体動態制御に必須な線虫RNA干渉タンパク質DRH-3の機能解析2013

    • Author(s)
      渡部 周二, 堀岡 敬太, 吉政 隆, 小田島千尋 , 花岡 文雄, 浴 俊彦
    • Organizer
      第77回日本生化学会中部支部例会・シンポジウム
    • Place of Presentation
      名古屋大学(愛知県名古屋市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 染色体動態制御に必須な線虫RNA干渉タンパク質DRH-3の分子機能解析2013

    • Author(s)
      渡部周二, 堀岡敬太, 吉政 隆, 小田島千尋, 花岡文雄, 浴 俊彦
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 線虫C. elegansの染色体安定化に関わるDRH-3タンパク質の機能解析2012

    • Author(s)
      堀岡敬太
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡市)
    • Year and Date
      2012-12-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Systematic screening for RNAi-related proteins that interact with a novel Dicer-like RNA helicase DRH-3 in C. elegans2012

    • Author(s)
      Keita Horioka
    • Organizer
      The Irago conference (The Asia-Pacific Interdisciplinary Research Conference (AP-IRC2012))
    • Place of Presentation
      Tahara (Aichi, Japan)
    • Year and Date
      2012-11-15
    • Related Report
      2013 Final Research Report
  • [Presentation] Systematic screening for RNAi-related proteins that interact with a novel Dicer-like RNA helicase DRH-3 in C. elegans2012

    • Author(s)
      K. Horioka, H. Fujita, T. Yoshimasa, A. Kitaura, T. Nakazawa, F. Hanaoka, and T. Eki
    • Organizer
      The Irago conference (The Asia-Pacific Interdisciplinary Rsearch Conference (AP-IRC2012))
    • Place of Presentation
      Tahara (Aichi, Japan)
    • Related Report
      2012 Research-status Report
  • [Presentation] Profiling nematode communities in two different types of soils in Japan by DNA barcode analysis2012

    • Author(s)
      T. Eki, Miyazaki, T. Nitta, S. Yoshimitsu, and H. Morise
    • Organizer
      The Irago conference (The Asia-Pacific Interdisciplinary Rsearch Conference (AP-IRC2012))
    • Place of Presentation
      Tahara (Aichi, Japan)
    • Related Report
      2012 Research-status Report
  • [Presentation] DNA barcode-based community analyses of the nematodes isolated from field and flowerbed soils2012

    • Author(s)
      T. Eki, E. Miyazaki, T. Nitta, S. Yoshimitsu, and H. Morise
    • Organizer
      The 4th Japan-Korea International Symposium on Microbial Ecology
    • Place of Presentation
      Toyohashi (Aichi, Japan)
    • Related Report
      2012 Research-status Report
  • [Presentation] 線虫C. elegansの染色体安定化に関わるDRH-3タンパク質の機能解析2012

    • Author(s)
      堀岡 敬太, 吉政 隆, 渡部 周二, 北浦 あゆみ, 藤田 弘人, 花岡 文雄, 浴 俊彦
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡市)
    • Related Report
      2012 Research-status Report
  • [Presentation] Further characterization of a novel Dicer-like RNA helicase DRH-3 in C. elegans2011

    • Author(s)
      堀岡敬太
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2011-12-16
    • Related Report
      2013 Final Research Report
  • [Presentation] Systematic screening for RNAi-related proteins that interact with a novel Dicer-like RNA helicase DRH-3 in C. elegans2011

    • Author(s)
      Keita Horioka
    • Organizer
      The Asia-Pacific Interdisciplinary Research Conference 2011 (AP-IRC 2011)
    • Place of Presentation
      Toyohashi (Aichi, Japan)
    • Year and Date
      2011-11-17
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Further characterization of drh-3 RNAi-treated nematode C. elegans2011

    • Author(s)
      Toshihiko Eki
    • Organizer
      The Asia-Pacific Interdisciplinary Research Conference 2011 (AP-IRC 2011)
    • Place of Presentation
      Toyohashi (Aichi, Japan)
    • Year and Date
      2011-11-17
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Classification and population analyses of soil nematodes by using an improved barcode-sequencing method2011

    • Author(s)
      Toshihiko Eki, Erika Miyazaki, Shoko Yoshimitsu, and Hisashi Morise
    • Organizer
      18th International C. elegans Meeting
    • Place of Presentation
      UCLA, Los Angeles (USA)
    • Related Report
      2011 Research-status Report
  • [Presentation] Further characterization of a novel Dicer-like RNA helicase DRH-3 in C. elegans2011

    • Author(s)
      堀岡敬太、藤田弘人、吉政 隆、中澤太朗、北浦あゆみ、花岡文雄、浴 俊彦
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Book] バイオセンサの先端科学技術と新製品への応用開発2014

    • Author(s)
      浴俊彦,他
    • Publisher
      技術情報協会(印刷中)
    • Related Report
      2013 Final Research Report
  • [Book] バイオセンサの先端科学技術と新製品への応用開発2014

    • Author(s)
      浴 俊彦、他
    • Total Pages
      550
    • Publisher
      技術情報協会
    • Related Report
      2013 Annual Research Report
  • [Book] 分子細胞生物学事典2013

    • Author(s)
      浴俊彦,他
    • Publisher
      みみずく舎(医事評論社)
    • Related Report
      2013 Final Research Report
  • [Book] 分子細胞生物学事典2013

    • Author(s)
      浴 俊彦
    • Publisher
      みみずく舎(医事評論社)
    • Related Report
      2012 Research-status Report
  • [Book] キーワードで理解するシグナル伝達キーワード事典2012

    • Author(s)
      浴俊彦,他
    • Publisher
      羊土社
    • Related Report
      2013 Final Research Report
  • [Book] キーワードで理解するシグナル伝達イラストマップ 第二版2012

    • Author(s)
      浴 俊彦, 花岡文雄
    • Publisher
      羊土社
    • Related Report
      2012 Research-status Report
  • [Book] 理工系学生のための生命科学・環境科学2011

    • Author(s)
      浴俊彦,他
    • Publisher
      東京化学同人
    • Related Report
      2013 Final Research Report
  • [Book] Ecotoxicology Around the Grobe2011

    • Author(s)
      Toshihiko Eki,他
    • Publisher
      Nova Science Publishers
    • Related Report
      2013 Final Research Report
  • [Book] Advances in Genetics Research, Volume 32011

    • Author(s)
      Toshihiko Eki,他
    • Publisher
      Nova Science Publishers
    • Related Report
      2013 Final Research Report
  • [Book] Advances in Genetics Research. Volume 32011

    • Author(s)
      Toshihiko Eki
    • Publisher
      Nova Science Publishers
    • Related Report
      2011 Research-status Report
  • [Book] Ecotoxicology Around the Grobe2011

    • Author(s)
      Toshihiko Eki
    • Publisher
      Nova Science Publishers
    • Related Report
      2011 Research-status Report
  • [Book] 理工系学生のための 生命科学・環境科学2011

    • Author(s)
      浴 俊彦
    • Publisher
      東京化学同人
    • Related Report
      2011 Research-status Report
  • [Remarks]

    • URL

      http://ens.tut.ac.jp/molgenetics/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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