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Resequencing of the entire HLA region in autoimmune liver diseases

Research Project

Project/Area Number 23590969
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Gastroenterology
Research InstitutionShinshu University

Principal Investigator

UMEMURA Takeji  信州大学, 医学部, 准教授 (30419345)

Co-Investigator(Renkei-kenkyūsha) OTA Masao  信州大学, 医学部, 准教授 (50115333)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2013: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2011: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsHLA / 自己免疫性肝炎 / 原発性胆汁性肝硬変 / 次世代シークエンサー / DNAタイピング
Research Abstract

We investigated HLA class I A, B, and C and HLA class II DRB1 and DQB1 alleles and haplotypes in Japanese patients with autoimmune hepatitis (AIH) and primary biliary cirrhosis (PBC). HLA-DRB1 DRB1*04:05-DQB1*04:01 haplotype was significantly associated with AIH susceptibility. Conversely, the DRB1*15:01-DQB1*06:02 haplotype was associated with protection from both disease onset. Significant associations were found with PBC susceptibility for the DRB1*08:03-DQB1*06:01. There were significant protective associations with the DRB1*13:02-DQB1*06:04 and DRB1*11:01-DQB1*03:01 haplotypes. The frequency of the DRB1*08:03-DQB1*06:01 haplotype was significantly higher in AIH patients who developed hepatic failure. The frequency of the DRB1*09:01-DQB1*03:03 haplotype was significantly higher in PBC patients who had received orthotopic liver transplantation. We established the role of HLA haplotypes in determining AIH and PBC susceptibility, protection and progression in the Japanese population.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (26 results)

All 2014 2013 2012 2011 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 1 results) Presentation (16 results)

  • [Journal Article] STAT4 gene polymorphisms are associated with susceptibility and ANA status in primary biliary cirrhosis.2014

    • Author(s)
      Joshita S, Umemura T, Nakamura M, Katsuyama Y, Shibata S, Kimura T, Morita S, Komatsu M, Matsumoto A, Yoshizawa K, Ishibashi H, Tanaka E, Ota M.
    • Journal Title

      Disease Markers

      Volume: Epub Pages: 727393-727393

    • DOI

      10.1155/2014/727393

    • NAID

      120007107427

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association analysis of Toll-like receptor 4 polymorphisms in Japanese primary biliary cirrhosis2013

    • Author(s)
      Morita, S, Joshita S, Umemura T, Ota M (12名)
    • Journal Title

      Human Immunology

      Volume: 74 Pages: 219-222

    • NAID

      120007100710

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association analysis of toll-like receptor 4 polymorphisms in Japanese primary biliary cirrhosis.2013

    • Author(s)
      Morita S
    • Journal Title

      Hum Immunol

      Volume: 74 Issue: 2 Pages: 219-222

    • DOI

      10.1016/j.humimm.2012.10.022

    • Related Report
      2013 Annual Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] HLA class II molecules confer both susceptibility and progression in Japanese patients with primary biliary cirrhosis2012

    • Author(s)
      Umemura T, Ota M(7名, 7番)
    • Journal Title

      Hepatology

      Volume: 55 Pages: 506-511

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Long-term outcome of Japanese patients with type 1 autoimmune hepatitis2012

    • Author(s)
      Yoshizawa K, Umemura T(13名, 4番), Ota M(13名, 9番)
    • Journal Title

      Hepatology

      Volume: 56 Pages: 668-676

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers2012

    • Author(s)
      Shiina T, Umemura T(17名), Ota M(17名)
    • Journal Title

      Tissue Antigens

      Volume: 80 Pages: 305-316

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human leukocyte antigen class II molecules confer both susceptibility and progression in Japanese patients with primary biliary cirrhosis2012

    • Author(s)
      Umemura K, Joshita S, Ichijo T, Yoshizawa K, Katsuyama Y, Tanaka E, Ota M
    • Journal Title

      Hepatology

      Volume: 55 Issue: 2 Pages: 506-511

    • DOI

      10.1002/hep.24705

    • NAID

      120007100712

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Association of IL28B gene polymorphism with development of hepatocellular carcinoma in Japanese patients with chronic hepatitis C virus infection2012

    • Author(s)
      oshita S, Umemura T, Katsuyama Y, Ichikawa Y, Kimura T, Morita S, Kamijo A, Komatsu M, Ichijo T, Matsumoto A, Yoshizawa K, Kamijo N, Ota M, Tanaka E.
    • Journal Title

      Human Immunology

      Volume: 73 Issue: 3 Pages: 298-300

    • DOI

      10.1016/j.humimm.2011.12.021

    • NAID

      120007110479

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers.2012

    • Author(s)
      Shiina T, Suzuki S, Ozaki Y, Taira H, Kikkawa E, Shigenari A, Oka A, Umemura T, Joshita S, Takahashi O, Hayashi Y, Paumen M, Katsuyama Y, Mitsunaga S, Ota M, Kulski JK, Inoko H
    • Journal Title

      Tissue Antigens.

      Volume: 80 Issue: 4 Pages: 305-16

    • DOI

      10.1111/j.1399-0039.2012.01941.x

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Human leukocyte antigen class II haplotypes affect clinical characteristics and progression of type 1 autoimmune hepatitis in Japan

    • Author(s)
      Umemura T, Ota M (9名, 9番)
    • Journal Title

      PLOS ONE

      Volume: (印刷中)

    • NAID

      120007100711

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] SS-SBT法によるAIHおよびPBC疾患感受性遺伝子HLA-DRB1, -DQB1の遺伝子タイピング2013

    • Author(s)
      梅村武司、太田正穂(10名, 10番)
    • Organizer
      第22回日本組織適合性学会大会
    • Place of Presentation
      福島
    • Related Report
      2013 Final Research Report
  • [Presentation] SS-SBT法によるAIHおよびPBC疾患感受性遺伝子HLA-DRB1の遺伝子タイピング2013

    • Author(s)
      梅村武司、城下智、田中榮司
    • Organizer
      第49回日本肝臓学会総会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] SS-SBT法によるAIHおよびPBC疾患感受性遺伝子HLA-DRB1、-DQB1の遺伝子タイピング2013

    • Author(s)
      梅村武司、勝山善彦、山崎麻美、赤羽由紀、田中榮司、鈴木進悟、尾崎有紀、椎名隆、猪子英俊、太田正穂
    • Organizer
      第22回 日本組織適合性学会大会
    • Place of Presentation
      コラッセふくしま(福島県福島市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] SS-SBT法によるAIHおよびPBC疾患感受性遺伝子HLA-DRB1の遺伝子タイピングの検討2013

    • Author(s)
      梅村武司、城下智、田中榮司
    • Organizer
      第49回日本肝臓学会総会
    • Place of Presentation
      京王プラザホテル(東京都)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Signal transducer and activator of transcription 4 gene polymorphisms are associated with production of antinuclear antibody in Japanese patients with primary biliary cirrhosis2012

    • Author(s)
      Joshita S, Umemura T, Ota M(7番, 7名)
    • Organizer
      The 63^<rd> Annual Meeting of the American Association for the Study of Liver Diseases
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] HLA-DRB1*09:01-DQB1*03:03 haplotype is associated with progression of primary biliary cirrhosis2012

    • Author(s)
      Umemura T, Ota M (6番, 6名)
    • Organizer
      The 63^<rd> Annual Meeting of the American Association for the Study of Liver Diseases
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Final Research Report
  • [Presentation] SS-SBT法によるAIHおよびPBC疾患感受性遺伝子HLA-DRB1の遺伝子タイピング2012

    • Author(s)
      勝山善彦、尾崎有紀、梅村武司、太田正穂(7名, 7番)
    • Organizer
      第21回日本組織適合性学会大会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] 自己免疫性肝炎疾患感受性遺伝子の検索2012

    • Author(s)
      梅村武司、太田正穂(9名, 9番)
    • Organizer
      第21回日本組織適合性学会大会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] The future of Gastroenterology in Asia2012

    • Author(s)
      Umemura T
    • Organizer
      第98回日本消化器病学会総会
    • Place of Presentation
      東京
    • Related Report
      2013 Final Research Report
  • [Presentation] 自己免疫性肝炎疾患感受性遺伝子の検索2012

    • Author(s)
      梅村武司、勝山善彦、目黒明、城下智、吉澤要、田中榮司、益尾清恵、猪子英俊、太田正穂
    • Organizer
      第21回 日本組織適合性学会大会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] SS-SBT 法による AIH および PBC 疾患感受性遺伝子 HLA-DRB 1 の遺伝子タイピング2012

    • Author(s)
      勝山善彦、尾崎有紀、梅村武司、鈴木進悟、椎名 隆、猪子英俊、太田正穂
    • Organizer
      第21回 日本組織適合性学会大会
    • Place of Presentation
      東京
    • Related Report
      2012 Research-status Report
  • [Presentation] HLA DRB1*09:01-DQB1*03:03 haplotype is Associated with Progression of Primary Biliary Cirrhosis2012

    • Author(s)
      Takeji Umemura, Satoru Joshita, Kaname Yoshizawa, Yoshihiko Katsuyama, Eiji Tanaka, Masao Ota
    • Organizer
      The 63rd Annual Meeting of the American Association for the Study of Liver Diseases
    • Place of Presentation
      Boston, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] Signal transducer and activiator of transcription 4 gene polymorphisms are associated with production of antinuclear antibody in Japanese patients with primary biliary cirrhosis2012

    • Author(s)
      Satoru Joshita, Takeji Umemura, Minoru Nakamura, Yoshihiko Katsuyama, Kaname Yoshizawa, Eiji Tanaka, Masao Ota
    • Organizer
      The 63rd Annual Meeting of the American Association for the Study of Liver Diseases
    • Place of Presentation
      Boston, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] The Future of Gastroenterology in Asia2012

    • Author(s)
      Takeji Umemura
    • Organizer
      第98回 日本消化病学会総会
    • Place of Presentation
      Tokyo
    • Related Report
      2012 Research-status Report
  • [Presentation] 原発性胆汁性肝硬変感受性とHLA2011

    • Author(s)
      梅村武司、城下 智、勝山善彦、一條哲也、吉澤 要、田中榮司、太田正穂
    • Organizer
      第20回 日本組織適合性学会大会
    • Place of Presentation
      静岡市
    • Related Report
      2011 Research-status Report
  • [Presentation] 原発性胆汁性肝硬変における HLA の検討2011

    • Author(s)
      梅村武司、城下 智、吉澤 要
    • Organizer
      第15回日本肝臓学会大会
    • Place of Presentation
      福岡市
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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