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Affinity Maturation of Antibodies by Induction of Gene Conversion or Somatic Hypermutation.

Research Project

Project/Area Number 23657002
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Genetics/Genome dynamics
Research InstitutionThe University of Tokyo

Principal Investigator

OOTA Kunihiro  東京大学, 大学院・総合文化研究科, 教授 (90211789)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2011: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords抗体遺伝子 / 突然変異 / 組換え / 抗体工学 / B 細胞 / 親和性成熟 / B細胞 / 獲得免疫
Research Abstract

In adaptive immune system, somatic hyper mutation in hyper-variable regions of antibody loci leads to affinity maturation of antibodies that strengthens the antigen binding activities. We previously developed an in vitro-based antibody design system using chicken B cell line DT40. This system, referred to as “ADLib (Autonomously Diversifying Library) system”, allows very rapid monoclonal antibodies production (within a week). In this study, ADLib system is newly equipped with the somatic hypermutation process, which is regulated by AID (auxin-inducible degron). In other words, affinity maturation is reconstituted in vitro by the use of DT40. Using this system, we can improve affinity of antibodies substantially.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (61 results)

All 2013 2012 2011 Other

All Journal Article (10 results) (of which Peer Reviewed: 1 results) Presentation (35 results) (of which Invited: 6 results) Book (2 results) Remarks (9 results) Patent(Industrial Property Rights) (5 results)

  • [Journal Article] Stress- induced lncRNAs evade nuclear degradation and enter the translational machinery2013

    • Author(s)
      Josephine Galipon ら
    • Journal Title

      Genes to Cells

      Volume: 18 Pages: 353-368

    • Related Report
      2012 Final Research Report
  • [Journal Article] Acetylated Histone H3K9 is associated with meiotic recombination hotspots,and plays a role in recombination redundantly with other factors including the H3K4 methylase Set1 in fission yeast.2013

    • Author(s)
      山田真太郎ら
    • Journal Title

      Nucleic Acids Res.

      Volume: 41 Pages: 3504-3517

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Journal Article] Stress-induced lncRNAs evade nuclear degradation and enter the translational machinery2013

    • Author(s)
      Galipon, Josephine ; Miki, Atsuko ; Oda, Arisa ; Inada, Toshifumi ; Ohta, Kunihiro
    • Journal Title

      Genes to Cells

      Volume: 18 Issue: 5 Pages: 353-368

    • DOI

      10.1111/gtc.12042

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A central coupler for recombination initiation linking chromosome architecture to S phase checkpoint2012

    • Author(s)
      三好知一郎ら
    • Journal Title

      Molecular Cell

      Volume: 47 Pages: 722-733

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Journal Article] 次代シークエンサーによる非コートDNA配列解析2012

    • Author(s)
      太田邦史
    • Journal Title

      実験医学2012年9月「トノム中98%の"未踏領域"非コートDNAに挑む

      Volume: 30 Pages: 2209-2214

    • Related Report
      2012 Final Research Report
  • [Journal Article] 次世代シークエンサーによる非コードDNA配列解析2012

    • Author(s)
      太田邦史
    • Journal Title

      実験医学 2012年9月号「ヒトゲノム中98%の"未踏領域"非コードDNAに挑む」

      Volume: 30 Pages: 2209-2214

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Genetic diversification mediated by unidirectional gene conversion.2011

    • Author(s)
      Kurosawa K. and Ohta K.
    • Journal Title

      Genes

      Volume: 2 Pages: 48-58

    • Related Report
      2012 Final Research Report 2011 Research-status Report
  • [Journal Article] 環境応答とエ・ケ・ノム2011

    • Author(s)
      太田邦史
    • Journal Title

      Endocrine Disrupter News Letter

      Volume: 14 Pages: 66-66

    • Related Report
      2012 Final Research Report
  • [Journal Article] 長鎖ncRNAによるクロマチン・転写活性化の制御2011

    • Author(s)
      太田邦史、小田有沙ら
    • Journal Title

      実験医学

      Volume: 29 Pages: 1722-1727

    • Related Report
      2011 Research-status Report
  • [Journal Article] 環境応答とエピゲノム2011

    • Author(s)
      太田邦史
    • Journal Title

      Endocrine Disrupter News Letter

      Volume: 14 Pages: 66-66

    • Related Report
      2011 Research-status Report
  • [Presentation] 抗体Fc領域自在改変システムの開発2012

    • Author(s)
      橋本講司、黒澤恒平、村山晃歩、加々谷英理、太田邦史
    • Organizer
      分子生物学会
    • Place of Presentation
      福岡、マリンメッセ福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Final Research Report
  • [Presentation] ADLibシステムを利用したモノクローナル抗体作製と迅速抗体エンジニアリング2012

    • Author(s)
      黒澤恒平、橋本講司、村山晃歩、太田邦史
    • Organizer
      日本生物工学会
    • Place of Presentation
      兵庫、神戸ポートアイランド
    • Year and Date
      2012-10-26
    • Related Report
      2012 Final Research Report
  • [Presentation] Conditional induction of whole genome remodeling in plants and fungi2012

    • Author(s)
      太田邦史
    • Organizer
      EMBO Genetic Stability and Change Workshop
    • Place of Presentation
      Roscoff(フランス)(招待講演)
    • Related Report
      2012 Final Research Report
  • [Presentation] Mde2 is a central coupler for meiotic recombination initiation that linkschromosome architecture to S- phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      The 1^st IGAKUKEN international symposium on "Regulation of ChromosomeCycle"(招待講演)
    • Place of Presentation
      東京都医学総合研究所(東京)
    • Related Report
      2012 Final Research Report
  • [Presentation] ADLibシステムを用いたシース・抗体の開発2012

    • Author(s)
      太田邦史
    • Organizer
      第12回日本蛋白質化学会)
    • Place of Presentation
      名古屋国際会議場(名古屋)(招待講演
    • Related Report
      2012 Final Research Report
  • [Presentation] A novel mediator for meiotic recombination initiation that links chromosome architecture to S- phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫)
    • Related Report
      2012 Final Research Report
  • [Presentation] A novel mediator for meiotic recombination initiation links chromosome architecture to S- phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      The 2012 CSHL Meeting onDynamic Organization of Nuclear Function(招待講演)
    • Place of Presentation
      Cold Spring Harbor(アメリカ)
    • Related Report
      2012 Final Research Report
  • [Presentation] Directional RNA-seq及びChIP-seqによるグルコース飢餓応答性長鎖ノンコーディングRNAのゲノムワイド解析2012

    • Author(s)
      小田 有沙
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] The transcriptiome analysis of stress responsive long non-coding RNAs using directional RNA-seq in fission yeast2012

    • Author(s)
      小田 有沙
    • Organizer
      The 2012 CSHL Meeting on Dynamic Organization of Nuclear Function
    • Place of Presentation
      Cold Spring Harbor(アメリカ)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Long non-coding RNA による転写制御の RNA-seq 解析2012

    • Author(s)
      小田 有沙
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学(仙台)
    • Related Report
      2012 Annual Research Report
  • [Presentation] グルコース飢餓ストレス応答性の long noncoding RNA による分裂酵母の転写制御機構2012

    • Author(s)
      小田 有沙
    • Organizer
      NGS現場の会 第二回研究会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 複製チェックポイントと染色体高次構造を仲介する新規因子による遺伝的組換え開始制御2012

    • Author(s)
      伊藤 将
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      九州大学(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Conditional induction of whole genome remodeling in plants and fungi2012

    • Author(s)
      太田邦史
    • Organizer
      EMBO Genetic Stability and Change Workshop
    • Place of Presentation
      Roscoff(フランス)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Mde2 is a central coupler for meiotic recombination initiation that links chromosome architecture to S-phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      1st IGAKUKEN International Symposium on ”Regulation of Chromosome Cycle”
    • Place of Presentation
      東京都医学総合研究所(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] TAQingシステムを用いた酵母の大規模ゲノム改変2012

    • Author(s)
      太田邦史
    • Organizer
      第183回酵母細胞研究会例会
    • Place of Presentation
      東京海洋大学(東京)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ADLibシステムを用いたシーズ抗体の開発2012

    • Author(s)
      太田邦史
    • Organizer
      第12回日本蛋白質化学会
    • Place of Presentation
      名古屋国際会議場(名古屋)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A novel mediator for meiotic recombination initiation that links chromosome architecture to S-phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A novel mediator for meiotic recombination initiation links chromosome architecture to S-phase checkpoint2012

    • Author(s)
      太田邦史
    • Organizer
      The 2012 CSHL Meeting on Dynamic Organization of Nuclear Function
    • Place of Presentation
      Cold Spring Harbor(アメリカ)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] A central coupler for recombination initiation linking chromosome architecture to S-phase checkpoint2012

    • Author(s)
      伊藤 将
    • Organizer
      The 8th 3R Symposium
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 染色体高次構造とS期チェックポイントを減数分裂期組換えの開始と連係させるリエゾン因子2012

    • Author(s)
      伊藤 将
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 分裂酵母グルコース飢餓におけるfbp1+アンチセンスlncRNAの分解制御2012

    • Author(s)
      三木 敦子
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒストン修飾酵素Gcn5およびSet1はlncRNAの転写と協調してグルコース飢餓応答に働く2012

    • Author(s)
      竹俣 直道
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 染色体高次構造と複製チェックポイントの連係を介した減数分裂組換え開始制御2012

    • Author(s)
      伊藤 将
    • Organizer
      第 30 回染色体ワークショップ・第 11 回核ダイナミクス研究会合同会議
    • Place of Presentation
      淡路夢舞台国際会議場(兵庫)
    • Related Report
      2012 Annual Research Report
  • [Presentation] A novel mediator for recombination initiation links chromosome architecture to S-phase checkpoint2012

    • Author(s)
      伊藤 将
    • Organizer
      The 2012 Meiosis Gordon Research Conference
    • Place of Presentation
      New London(アメリカ)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Gene regulation by lncRNAs in response to low glucose stress2011

    • Author(s)
      太田邦史ら
    • Organizer
      分子生物学会
    • Place of Presentation
      神奈川、シフィコ横浜(招待講演)
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] The conserved N-terminus regions contribute to the functional differentiation of HDAC1 and HDAC2 at the immunoglobulin loci2011

    • Author(s)
      黒澤恒平、太田邦史
    • Organizer
      分子生物学会
    • Place of Presentation
      神奈川、シフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2012 Final Research Report
  • [Presentation] 相同組換えと突然変異を連携させた抗体の高親和性化システムの開発2011

    • Author(s)
      禅野かなみ、黒澤恒平、林和花、村山晃歩、加々谷英理、太田邦史
    • Organizer
      分子生物学会
    • Place of Presentation
      神奈川、シフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Rec15/ Mer2 bridges meiotic recombination initiation sites to chromosome axes to facilitate the assembly of recombination initiation complexes2011

    • Author(s)
      Ohta K., et al.
    • Organizer
      EMBO workshop
    • Place of Presentation
      イタリア、Paestum
    • Year and Date
      2011-09-19
    • Related Report
      2012 Final Research Report
  • [Presentation] 環境応答とエヒ・ケ・ノム2011

    • Author(s)
      太田邦史
    • Organizer
      第5回ホルモン学会
    • Place of Presentation
      東京、東大(本郷)(招待講演)
    • Year and Date
      2011-06-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 大規ゲノム再編成システム2011

    • Author(s)
      太田邦史
    • Organizer
      第7回よこはまイオマス研究会(招待講演)
    • Place of Presentation
      神奈川、横浜市立大(招待講演)
    • Year and Date
      2011-05-31
    • Related Report
      2012 Final Research Report
  • [Presentation] 環境応答とエピゲノム2011

    • Author(s)
      太田 邦史
    • Organizer
      第5回環境ホルモン学会(招待講演)
    • Place of Presentation
      東京、東大(本郷)
    • Related Report
      2011 Research-status Report
  • [Presentation] 大規模ゲノム再編成システム2011

    • Author(s)
      太田 邦史
    • Organizer
      第7回よこはまバイオマス研究会(招待講演)
    • Place of Presentation
      神奈川、横浜市立大
    • Related Report
      2011 Research-status Report
  • [Presentation] Gene regulation by lncRNAs in response to low glucose stress2011

    • Author(s)
      太田 邦史ら
    • Organizer
      分子生物学会(招待講演)
    • Place of Presentation
      神奈川、パシフィコ横浜
    • Related Report
      2011 Research-status Report
  • [Presentation] Rec15/Mer2 bridges meiotic recombination initiation sites to chromosome axes to facilitate the assembly of recombination initiation complexes2011

    • Author(s)
      Ohta K., et al.
    • Organizer
      EMBO workshop (Meiosis)
    • Place of Presentation
      イタリア、Paestum
    • Related Report
      2011 Research-status Report
  • [Presentation] Role of long non-coding RNAs during glucose starvation in fission yeast2011

    • Author(s)
      Takemata N. et al.
    • Organizer
      FASEB Summer Conferences (epigenetics)
    • Place of Presentation
      アメリカ、Snowmass
    • Related Report
      2011 Research-status Report
  • [Book] "Chimeric antibodies" In "Human Monoclonal Antibodies: Methods and Protocols"2013

    • Author(s)
      黒澤恒平、林和花、太田邦史
    • Publisher
      Sprimger
    • Related Report
      2012 Final Research Report
  • [Book] “Chimeric antibodies” In “Human Monoclonal Antibodies: Methods and Protocols”2013

    • Author(s)
      黒澤恒平ら
    • Publisher
      Springer
    • Related Report
      2012 Annual Research Report
  • [Remarks] 東京大学大学院総合文化研究科太田研

    • URL

      http://www.ohta-lab.c.u-tokyo.ac.jp/

    • Related Report
      2012 Final Research Report
  • [Remarks] 太田邦史、親から子への遺伝子て中心的な役割を果たす遺伝子を発見

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20120727095047.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 太田邦史か平成24年度関東地方発明表彰・発明協会会長奨励賞を受賞

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20121206171324.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 太田邦史か第10回産学官連携功労者表彰・文部科学大臣賞を受賞

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20121005114516.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 東京大学大学院総合文化研究科太田研

    • URL

      http://www.ohta-lab.c.u-tokyo.ac.jp/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 太田邦史教授、親から子への遺伝子継承で中心的な役割を果たす遺伝子を発見

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20120727095047.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 太田邦史教授が平成24年度関東地方発明表彰・発明協会会長奨励賞を受賞

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20121206171324.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 太田邦史教授が第10回産学官連携功労者表彰・文部科学大臣賞を受賞

    • URL

      http://www.c.u-tokyo.ac.jp/info/news/topics/20121005114516.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.ohta-lab.c.u-tokyo.ac.jp/index.html

    • Related Report
      2011 Research-status Report
  • [Patent(Industrial Property Rights)] 植物バイオマスの増産方法2013

    • Inventor(s)
      村本伸彦ら
    • Industrial Property Rights Holder
      豊田中央研究所、東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2013-049689
    • Filing Date
      2013-03-12
    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] 非誘導体型 LPA に対して作製された抗LPA 抗体2012

    • Inventor(s)
      太田邦史ら
    • Industrial Property Rights Holder
      東京大学
    • Industrial Property Number
      2012-284612
    • Filing Date
      2012-12-28
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] タンク質の迅速改良法2012

    • Inventor(s)
      黒澤恒平、太 田邦史 、瀬尾秀宗
    • Industrial Property Rights Holder
      東京大学、カイオム・バイオサイエンス
    • Industrial Property Number
      2012-138293
    • Filing Date
      2012-06-20
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] 非誘導体型LPAに対して作製された抗LPA抗体2012

    • Inventor(s)
      太田邦史ら
    • Industrial Property Rights Holder
      東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2012-284612
    • Filing Date
      2012-12-28
    • Related Report
      2012 Annual Research Report
  • [Patent(Industrial Property Rights)] タンパク質の迅速改良法2012

    • Inventor(s)
      黒澤恒平、太田邦史、瀬尾秀宗
    • Industrial Property Rights Holder
      東京大学、カイオム・バイオサイエンス
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2012-138293
    • Filing Date
      2012-06-20
    • Related Report
      2012 Annual Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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