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Diversity and transcription of 16S rRNA genes on the genome of halophilic archaea

Research Project

Project/Area Number 23657016
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Ecology/Environment
Research InstitutionShizuoka University

Principal Investigator

KIMURA Hiroyuki  静岡大学, 理学部, 講師 (30377717)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2012: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords微生物 / 生態 / 極限環境 / 好塩菌 / アーキア / 16S Rrna / G+C 含量 / 微生物分子温度計 / 16S rRNA / GC含量 / 好塩性アーキア / 環境適応 / 生育温度 / 増殖速度定数 / 16S rRNA遺伝子 / G+C含量 / 転写 / 定量RT-PCR
Research Abstract

Halophilic archaea have a few types of 16S rRNA gene on their genome. The prokaryotes, which live in high temperature, commonly have high G+C content of 16S rRNA genes, whereas the prokaryotes, which live in normal or low temperature, have low G+C content of 16S rRNA genes. In this study, we determined the growth temperatures and transcription amount of 16S rRNA genes of the halophilic archaeal strains in several temperature conditions. The low G+C content of 16S rRNAs showed significant upregulation in 25-30℃. On the other hand, high G+C content of 16S rRNAs were expressed at significantly higher levels in high temperature condition, 40-50℃.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (18 results)

All 2013 2012 2011 Other

All Journal Article (5 results) (of which Peer Reviewed: 4 results) Presentation (11 results) (of which Invited: 2 results) Remarks (2 results)

  • [Journal Article] Growth temperatures of archaeal communities can be estimated from the guanine-plus-cytosine contents of 16S rRNA gene fragments2013

    • Author(s)
      Hiroyuki Kimura, Kousuke Mori, Toshiro Yamanaka, Jun-Ichiro Ishibashi
    • Journal Title

      Environmental Microbiology Reports

      Volume: Vol.5 Issue: 3 Pages: 468-474

    • DOI

      10.1111/1758-2229.12035

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hydrogen and carbon isotope fractionation by thermophilic hydrogenotrophic methanogens from a deep aquifer under coculture with fermenters2012

    • Author(s)
      Shohei Hattori, Hiroaki Nashimoto, Hiroyuki Kimura, Keisuke Koba, Keita Yamada, Mikio Shimizu, Hiroshi Watanabe, Muneoki Yoh, Naohiro Yoshida
    • Journal Title

      Geochemical Journal

      Volume: Vol.46、No.3 Pages: 193-200

    • NAID

      10030973363

    • URL

      http://www.terrapub.co.jp/journals/GJ/abstract/4603/46030193.html

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Meiothermus hypogaeus sp. nov., a novel moderately thermophilic bacterium isolated from a Japanese hot spring2012

    • Author(s)
      Koji Mori、Takao Iino、Jun-Ichiro Ishibashi、Hiroyuki Kimura、Ken-Ichiro Suzuki
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: Vol.62、No.1 Issue: 1 Pages: 112-117

    • DOI

      10.1099/ijs.0.028654-0

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] 微生物分子温度計による地下圏の温度プロファイリング2012

    • Author(s)
      木村浩之
    • Journal Title

      月刊地球

      Volume: 34巻 Pages: 201-206

    • Related Report
      2012 Final Research Report 2011 Research-status Report
  • [Journal Article] DeLong、Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium2011

    • Author(s)
      Hiroyuki Kimura, Robert Young, Asuncion Martinez, Edward F
    • Journal Title

      The ISME Journal

      Volume: Vol.5、No.10 Issue: 10 Pages: 1641-1651

    • DOI

      10.1038/ismej.2011.36

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 好塩性古細菌Haloarcula の多様な 16S rRNA 遺伝子と生育温度2013

    • Author(s)
      佐藤 悠、木村浩之
    • Organizer
      第14回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡大学大学会館(静岡市)
    • Year and Date
      2013-03-16
    • Related Report
      2012 Final Research Report
  • [Presentation] プロテオロドプシンを有する海洋細菌の光エネルギー利用と代謝メカニズム2012

    • Author(s)
      木村浩之
    • Organizer
      日本地球惑星科学連合 2012 年大会
    • Place of Presentation
      幕張メッセ国際会議場(千葉市)
    • Year and Date
      2012-05-20
    • Related Report
      2012 Final Research Report
  • [Presentation] 次世代シーケンサーによるsmall RNA の解析と水圏複合微生物系への展開2012

    • Author(s)
      木村浩之
    • Organizer
      日本農芸化学会 2012 年度京都大会
    • Place of Presentation
      京都女子大学(京都市)
    • Year and Date
      2012-03-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 次世代シーケンサーによるsmall RNAの解析と水圏複合微生物系への展開2012

    • Author(s)
      木村浩之
    • Organizer
      日本農芸化学会2012年度京都大会(招待講演)
    • Place of Presentation
      京都女子大学・京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] プロテオロドプシンを有する海洋細菌の網羅的遺伝子応答解析2011

    • Author(s)
      木村浩之、Young C、Martinez A、DeLong EF
    • Organizer
      第27回日本微生物生態学会
    • Place of Presentation
      京都大学農学部(京都市)
    • Year and Date
      2011-10-08
    • Related Report
      2012 Final Research Report
  • [Presentation] 微生物分子温度計:地下圏の温度プロファイリング2011

    • Author(s)
      木村浩之、道林克禎
    • Organizer
      日本鉱物科学会 2011 年年会
    • Place of Presentation
      茨城大学理学部(茨城県水戸市)
    • Year and Date
      2011-09-09
    • Related Report
      2012 Final Research Report
  • [Presentation] プロテオロドプシンを有する海洋細菌の網羅的遺伝子応答解析2011

    • Author(s)
      木村浩之、Young C、Martinez A、DeLong EF
    • Organizer
      第27回日本微生物生態学会
    • Place of Presentation
      京都大学・京都市
    • Related Report
      2011 Research-status Report
  • [Presentation] 微生物分子温度計:地下圏の温度プロファイリング2011

    • Author(s)
      木村浩之、道林克禎
    • Organizer
      日本鉱物科学会2011年年会
    • Place of Presentation
      茨城大学・水戸市
    • Related Report
      2011 Research-status Report
  • [Presentation] プロテオロドプシンを有する海洋細菌の光エネルギー利用と代謝メカニズム

    • Author(s)
      木村浩之
    • Organizer
      日本地球惑星科学連合2012年大会
    • Place of Presentation
      幕張メッセ国際会議場(千葉県)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 深部地下水の微生物群集を利用した付加帯エネルギー生産システム

    • Author(s)
      木村浩之
    • Organizer
      日本太陽エネルギー学会/太陽光化学・バイオ部会 第4回研究講演会
    • Place of Presentation
      東京理科大学森戸記念館(東京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 好塩性古細菌Haloarculaの多様な16S rRNA遺伝子と生育温度

    • Author(s)
      佐藤 悠、木村浩之
    • Organizer
      第14回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡大学大学会館(静岡県)
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.ipc.shizuoka.ac.jp/~shkimur/top.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 木村研究室ホームページ

    • URL

      http://www.ipc.shizuoka.ac.jp/~shkimur/top.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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