• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Biochemical identification of RNA editing enzyme in plastids

Research Project

Project/Area Number 23657032
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Plant molecular biology/Plant physiology
Research InstitutionKyoto University

Principal Investigator

TOSHIHARU Shikanai  京都大学, 理学(系)研究科(研究院), 教授 (70273852)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords葉緑体 / RNA / PPRタンパク質 / 翻訳 / 光合成 / シロイヌナズナ / RNA編集 / PPR / 遺伝学
Research Abstract

PGR3 is a PPR protein consisting of 27 PPR motifs and stabilizes the petLoperon RNA and also activates the translation of petL and ndhA. To study the function of each PPR motif, a series of mutations which inactivated the specific function of each PPR motif was introduced to PGR3. The N-terminal PPR motifs of PGR3 are required for recognizing two target RNAs by the combination of different set of PPR motifs. In contrast, the C-terminal PPR motifs were essential for activating translation of petL and ndhA. The C-terminal PPR motifs bind RNA to modify its secondary structure, the process which likely recruits the translational machinery. This function of C-terminal domain of PPR proteins is probably conserved in the PPR proteins involved in RNA editing. We hypothesize that the C-terminal domains of such PPR proteins also modify the secondary structure of RNA to recruit the RNA editing enzyme to the target site.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (15 results)

All 2014 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (4 results) (of which Invited: 1 results) Book (2 results)

  • [Journal Article] Mutagenesis of Individual Pentatricopeptide Repeat Motifs Affects RNA Binding Activity and Reveals Functional Partitioning of Arabidopsis PROTONGRADIENT REGULATION32013

    • Author(s)
      Fujii S, Sato N, Shikanai T
    • Journal Title

      Plant Cell

      Volume: 25 Issue: 8 Pages: 1-11

    • DOI

      10.1105/tpc.113.112193

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Function of PPR proteins in plastid gene expression2013

    • Author(s)
      Shikanai T, Fujii S
    • Journal Title

      RNA Biology

      Volume: 10 Issue: 9 Pages: 1-11

    • DOI

      10.4161/rna.25207

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.2012

    • Author(s)
      Boussardon C., Salone V., Avon A., Berthom R., Hammani K., Okuda K., Shikanai T., Small I., and Lurin C.
    • Journal Title

      Plant Cell

      Volume: 24 Issue: 9 Pages: 3684-3694

    • DOI

      10.1105/tpc.112.099507

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids2012

    • Author(s)
      Okuda K. and Shikanai T
    • Journal Title

      Nucleic Acids Res

      Volume: 40 Issue: 11 Pages: 5052-5064

    • DOI

      10.1093/nar/gks164

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Composition and physiological function of the chloroplast NADH dehydrogenase-like complex in Marchantia polymorpha2012

    • Author(s)
      Ueda M., Kuniyoshi T., Yamamoto Y., Sugimoto K., Ishizaki K., Kohchi T., Nishimura Y. and Shikanai T
    • Journal Title

      Plant J.

      Volume: 72 Issue: 4 Pages: 683-693

    • DOI

      10.1111/j.1365-313x.2012.05115.x

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] PGR 5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO_2 fixation and biomass production in rice2012

    • Author(s)
      Nishikawa Y, Yamamoto H, Okegawa Y, Wada S, Sato N, Taira Y, Sugimoto K, Makino A and Shikanai T
    • Journal Title

      Plant Cell Physiol

      Volume: 53 Issue: 12 Pages: 2117-2126

    • DOI

      10.1093/pcp/pcs153

    • NAID

      10031145641

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids.2012

    • Author(s)
      Okuda K. and Shikanai T.
    • Journal Title

      Nucl. Acids Res.

      Volume: 40 Pages: 5052-5064

    • DOI

      10.1007/978-1-61779-234-2_13

    • ISBN
      9781617792335, 9781617792342
    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria2011

    • Author(s)
      Hammani K, des Francs-Small CC, Takenaka M, Tanz SK, Okuda K, Shikanai T, Brennicke A, Small I.
    • Journal Title

      J.Biol.Chem.

      Volume: 286 Issue: 24 Pages: 2136-2171

    • DOI

      10.1074/jbc.m111.230516

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids2011

    • Author(s)
      Cai W, Okuda K, Peng L, Shikanai T
    • Journal Title

      Plant J

      Volume: 67 Issue: 2 Pages: 318-327

    • DOI

      10.1111/j.1365-313x.2011.04593.x

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 巨大RNA結合タンパク質ファミリーによる転写制御システム2014

    • Author(s)
      藤井壮太, 佐藤望, 鹿内利治
    • Organizer
      第16回オルガネラワークショップ
    • Place of Presentation
      富山大学
    • Year and Date
      2014-03-17
    • Related Report
      2013 Final Research Report
  • [Presentation] Toward understanding the chloroplast post-transcriptional RNA regulation by the pentatricopeptide repeat proteins2013

    • Author(s)
      Fujii S and Shikanai T
    • Organizer
      JST-CREST International Symposium
    • Place of Presentation
      Kyoto
    • Year and Date
      2013-12-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Serial point-mutations into pentatricopeptide repeat motifs reveal functional partitioning PGR32013

    • Author(s)
      Fujii S., Sato, N. and Shikanai T.
    • Organizer
      日本植物生理学会
    • Place of Presentation
      岡山大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Toward understanding the chloroplast post-transcriptional RNA regulation by the pentatricopeptide repeat protein

    • Author(s)
      Fujii S and Shikanai T
    • Organizer
      JST-CREST International Symposium
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Why do plants edit RNA in plant organelles? C.E. Bullerwell (ed.) Organelle Genetics2012

    • Author(s)
      Shikanai T
    • Publisher
      Springer-Verlag Berlin Heidelberg
    • Related Report
      2013 Final Research Report
  • [Book] In vitro RNA-binding assay for studying trans-factor for RNA editing in chloroplasts, Chloroplast Research in Arabidopsis : Method and Protocols, volume 1, methods in molecular biology, vol 7742011

    • Author(s)
      Shikanai T. and Okuda K(R.P. Javis (ed.))
    • Publisher
      Springer Science+Business Media
    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi