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Development of the substrate identification method against budding yeast SCF complex using site-specific photocross-linking in vivo

Research Project

Project/Area Number 23657088
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Functional biochemistry
Research InstitutionNagoya University

Principal Investigator

KAMURA Takumi  名古屋大学, 理学研究科, 教授 (40333455)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsタンパク質分解 / ユビキチン
Research Abstract

Ubiquitylation and subsequent proteasomal degradation of regulatory proteins control a variety of cellular processes. The E3s are responsible for recognizing and recruiting target proteins for polyubiquitylation. Relationship between E3s and substrates are largely uncharacterized because of the technical difficulty. In this study, we perform site-specific photocross-linking in vivo to identify specific substrates of SCF complex. Hard3 forms complex with Hrd1 and functions as a E3. We identify the specific binding region of Hrd3 with Hrd1 using site-specific photocross-linking in vivo. However, in these processes, we recognize that this method is not suitable for the detection of novel binding protein, because of the lacking of the binding region information. Then we perform yeast two-hybrid screening and identify p50 as a candidate of SCFmet30 substrate. Stability of p50 is regulated by SCFmet30 in the cell cycle dependent manner. We are currently investigating the functional meaning of this degradation.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (26 results)

All 2013 2012 2011 Other

All Journal Article (7 results) (of which Peer Reviewed: 6 results) Presentation (16 results) Remarks (3 results)

  • [Journal Article] A stalled retrotranslocation complex reveals physical linkage between substrate recognition and proteasomal degradation during ER associated degradation2013

    • Author(s)
      Kunio Nakatsukasa. Jeffrey L. Brodsky, Takumi Kamura
    • Journal Title

      Molecular Biology of the Cell

      Volume: (印刷中) Issue: 11 Pages: 1765-1775

    • DOI

      10.1091/mbc.e12-12-0907

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Activation of double-stranded RNA-activated protein kinase (PKR) by interferon-stimulated gene 15 (ISG15) modification down-regulates protein translation2013

    • Author(s)
      Okumura, F., Okumura, AJ., Uematsu, K., Hatakeyama, S., Zhang, DE., Kamura, T
    • Journal Title

      J Biol Chem

      Volume: 288(4) Issue: 4 Pages: 2839-47

    • DOI

      10.1074/jbc.m112.401851

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Elongin BC型E3ユビキチンリガーゼと細胞機能制御2013

    • Author(s)
      奥村 文彦、奥村 晶子、中務 邦雄、嘉村 巧
    • Journal Title

      生化学

      Volume: 85(2) Pages: 76-88

    • NAID

      10031156446

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Role of Elongin BC-Containing Ubiquitin Ligases.2012

    • Author(s)
      Fumihiko Okumura, Mariko Matsuzaki, Kunio Nakatsukasa, Takumi Kamura
    • Journal Title

      Regulation of cellular functions by Elongin BC based E3 ubiquitin ligase

      Volume: 2 Pages: 1-13

    • DOI

      10.3389/fonc.2012.00010

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Non-SCF type F-box protein Roy1/Ymr258c interacts with a Rab5-like GTPase Ypt52 and inhibits Ypt52 function2011

    • Author(s)
      Liu, Y., Nakatsukasa, K., Kotera, M., Kanada, A., Nishimura, T., Kishi, T., Mimura, S., Kamura, T
    • Journal Title

      Mol. Biol. Cell

      Volume: 22 Pages: 1575-1584

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cullin 型E3 リガーゼの機能と制御機構2011

    • Author(s)
      中務邦雄、嘉村 巧
    • Journal Title

      実験医学(増刊)「細胞内のリノベーション機構 タンパク質分解系による生体制御」

      Volume: 29(12) Pages: 1933-1937

    • Related Report
      2012 Final Research Report
  • [Journal Article] Non-SCF type F-box protein Roy1/Ymr258c interacts with a Rab5-like GTPase Ypt52 and inhibits Ypt52 function2011

    • Author(s)
      Liu Y et al
    • Journal Title

      Molecular Biology of the Cell

      Volume: 22 Pages: 1575-1584

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] Activation of double-stranded RNA-activated protein kinase (PKR) by interferon stimulated gene 15 (ISG15) modification down-regulates cap-dependent translation2013

    • Author(s)
      Fumihiko Okumura, Takumi Kamura
    • Organizer
      1st International Symposium on "Protein Modifications in Pathogenic Dysregulation of Signaling"
    • Place of Presentation
      University of Tokyo (Tokyo)
    • Related Report
      2012 Final Research Report
  • [Presentation] ユビキチンリガーゼによる選択的基質識別メカニズム2012

    • Author(s)
      嘉村巧
    • Organizer
      「ユビキチンネオバイオロジー:拡大するタンパク質制御システム」kick-offシンポジウム
    • Place of Presentation
      京都大学(京都市、京都府)
    • Year and Date
      2012-09-26
    • Related Report
      2012 Final Research Report
  • [Presentation] Hrd1ユビキチンリガーゼ複合体の動的な会合制御は小胞体の恒常性維持に必須である2012

    • Author(s)
      中務邦雄、ジェフ・ブロドスキー、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      第35回日本分子生物学会年会
    • Related Report
      2012 Final Research Report
  • [Presentation] double-stranded RNA-activated protein kinase (PKR) はinterferon stimulated gene 15 (ISG15)修飾により活性化され、キャップ構造依存性のタンパク質翻訳を抑制する2012

    • Author(s)
      奥村文彦、奥村晶子、畠山鎮次、ザン・ドンガー、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市、福岡県)
    • Related Report
      2012 Final Research Report
  • [Presentation] 酸化ストレス下におけるRab5 様GTPaseYpt53の役割2012

    • Author(s)
      金田晃、中務邦雄、奥村文彦、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市、福岡県)
    • Related Report
      2012 Final Research Report
  • [Presentation] Cul2型ユビキチンリガーゼZYG11Bの機能解析2012

    • Author(s)
      植松桂司、奥村文彦、中務邦雄、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市、福岡県)
    • Related Report
      2012 Final Research Report
  • [Presentation] 複合体型SCFYlr224w E3リガーゼの新規基質p40の同定2012

    • Author(s)
      西村崇、中務邦雄、奥村文彦、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市、福岡県)
    • Related Report
      2012 Final Research Report
  • [Presentation] SCF Met30 E3ユビキチンリガーゼ新規基質p35の同定2012

    • Author(s)
      松崎真理子、嘉村巧
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡市、福岡県)
    • Related Report
      2012 Final Research Report
  • [Presentation] Cul2型ユビキチンリガーゼZYG11Bの機能解析2012

    • Author(s)
      植松 桂司
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 複合体型SCFYlr224w E3リガーゼの新規基質p40の同定2012

    • Author(s)
      西村 崇
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] SCF Met30 E3ユビキチンリガーゼ新規基質p35の同定2012

    • Author(s)
      松崎 真理子
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] double-stranded RNA-activated protein kinase (PKR) はinterferon stimulated gene 15 (ISG15)修飾により活性化され、キャップ構造依存性のタンパク質翻訳を抑制する2012

    • Author(s)
      奥村 文彦
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Hrd1ユビキチンリガーゼ複合体の動的な会合制御は小胞体の恒常性維持に必須である2012

    • Author(s)
      中務 邦雄
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Snapshots of the ubiquitinated substrates and the membrane-associated E3 ligase complex during the ER-associated degradation2011

    • Author(s)
      Kunio Nakatsukasa and Takumi Kamura
    • Organizer
      Quality Control 2011: Folding and Degradation of Proteins in the Endoplasmic Reticulum
    • Place of Presentation
      Centro Stefano Franscini, Monte Verita, Ascona, Switzerland
    • Related Report
      2012 Final Research Report
  • [Presentation] TRIM8 regulates Nanog via Hsp90β-medicated nuclear translocation of STAT3 in embryonic stem cells2011

    • Author(s)
      奥村文彦、奥村晶子、松本雅記、中山敬一、嘉村巧、畠山鎮次
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市、神奈川県)
    • Related Report
      2012 Final Research Report
  • [Presentation] ERADにおける小胞体膜ユビキチンリガーゼ複合体の機能解析2011

    • Author(s)
      中務邦雄 等
    • Organizer
      第84回日本生化学会大会(招待講演)
    • Place of Presentation
      京都
    • Related Report
      2011 Research-status Report
  • [Remarks] ホームページ

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/~2kamura/index.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 名古屋大学大学院理学研究科生命理学専攻分子修飾制御学グループ

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/~2kamura/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/%7e2kamura/index.html

    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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