Paleogenomics on Jomon and Yayoi human remains by using next generation sequencer
| Project/Area Number |
23657167
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| Research Category |
Grant-in-Aid for Challenging Exploratory Research
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| Allocation Type | Multi-year Fund |
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| Research Field |
Physical anthropology
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| Research Institution | Kitasato University |
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Principal Investigator |
OOTA Hiroki 北里大学, 医学部, 准教授 (40401228)
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| Co-Investigator(Kenkyū-buntansha) |
HANIHARA Tsunehiko 北里大学, 医学部, 教授 (00180919)
ISHIDA Hajime 琉球大学, 医学部, 教授 (70145225)
KIMURA Ryosuke 琉球大学, 亜熱帯島嶼科学超域研究推進機構, 准教授 (00453712)
MANO Shuhei 統計数理研究所, 数理・推論研究系, 准教授 (20372948)
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| Project Period (FY) |
2011 – 2012
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| Project Status |
Completed (Fiscal Year 2012)
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| Budget Amount *help |
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
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| Keywords | パーソナルゲノム / 縄文人 / 弥生人 / 次世代シークエンサー / 日本人の起源 / 沖縄 / 先島諸島 / アイヌ |
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| Research Abstract |
We successfully extracted DNAs from ancient human and animal bones that could be analyzed by next generation sequencers. The DNAs were degraded to less than 70bp and modified chemically. The extractions contained a huge amount of bacterial DNAs. Haplotype analyses strongly suggested the very close relationship between Ainu and Ryukyuan.
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Report
(3 results)
Research Products
(32 results)
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[Journal Article] The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan Populations.2012
Author(s)
Jinam T, Nishida N, Hirai M, Kawamura S, Oota H, Umetsu K, Kimura R, Ohashi J, Tajima A, Yamamoto T, Tanabe H, Mano S, Suto Y, Kaname T, Naritomi K, Yanagi K, Niikawa N, Omoto K. Saitou N
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Journal Title
Journal of Human Genetics
Volume: 57巻
Issue: 12
Pages: 787-79
DOI
NAID
Related Report
Peer Reviewed
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[Journal Article] A population genetic study on the relationship between medaka fish and the spread of wet-rice cultivation across the Japanese archipelago2012
Author(s)
Katsumura, T., Oda, S., Tsukamoto, K., Sekiya, Y., Yamashita, T., Aso, M., Hata, M., Nonaka, M., Mano, S., Ishida, H., Mitani, H., Kawamura, S., Oota, H.
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Journal Title
Anthropological Science
Volume: 120
Issue: 1
Pages: 81-89
DOI
NAID
ISSN
0918-7960, 1348-8570
Related Report
Peer Reviewed
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[Presentation] Populations specific susceptibility To Crohn's disease and signals of natural selection on standing vari- Populations specific susceptibility To Crohn's disease and signals of natural selection on standing vari- ation (Poster)2011
Author(s)
S. Nakagome, S. Mano, L. Kozlowski, J. M. Bujnicki, H. Shibata, Y. Fukumaki, J. R. Kidd, K. K. Kidd, S. Kawamura, H. Oota
Organizer
The 12th ICHG/The 61th Annual Meeting of The American Society of Human Genetics
Place of Presentation
Montreal, Canada
Related Report
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[Presentation] Population specific distri- bution of Crohn's disease risk alleles on the NOD2locus and natu- ral selection on standing variation (Oral)2011
Author(s)
S. Nakagome, S. Mano, L. Kozowski, J. M. Bujnicki, H. Shibata, Y. Fukumaki, J. R. Kidd, K. K. Kidd, S. Kawamura, H. Oota
Organizer
The Society for Molecular Biology and Evolution Annual Meeting
Place of Presentation
kyoto,Japan
Related Report
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