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Screening for novel antibiotics targeting RNA metabolism

Research Project

Project/Area Number 23658073
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionTokyo Institute of Technology

Principal Investigator

TAKADA Ayako  東京工業大学, 技術部, 技術職員 (20401565)

Co-Investigator(Renkei-kenkyūsha) WACHI Masaaki  東京工業大学, 大学院・生命理工学研究科, 教授 (90192822)
Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2013: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsRNA代謝 / 抗生物質 / Hfq / Hfq
Research Abstract

In the chemotherapy of bacterial infectious diseases, the emergence of multidrug-resistant strains is becoming a serious problem. One of the strategies to overcome this problem is to develop new antibiotics with a new molecular target.
The Hfq protein is known as an RNA chaperone. We previously reported that overproduction of Hfq inhibits cell division by suppressing expression of the cell division protein FtsZ.
In this study, we developed a novel screening system for inhibitors of Hfq-mediated RNA metabolism. Escherichia coli strain carrying the IPTG-inducible hfq gene was used in the assay. We assayed culture broths of actinomycetes isolated from soil samples. Recovery of colony formation was observed for 27 samples. It was found that ravidomycin, an inhibitor of RNA synthesis, and streptovaricin C, an inhibitor of RNA polymerase, were active compounds. These results showed that RNA polymerase inhibitors somehow suppressed Hfq-mediated growth inhibition.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (30 results)

All 2013 2012 2011 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (26 results)

  • [Journal Article] <small>L</small>-Glutamate Secretion by the N-Terminal Domain of the <i>Corynebacterium glutamicum</i> NCgl1221 Mechanosensitive Channel2013

    • Author(s)
      Yamashita C., Hashimoto K., Kumagai K., Takada A., Kawasaki H. and Wachi M
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 77 Issue: 5 Pages: 1008-1013

    • DOI

      10.1271/bbb.120988

    • NAID

      10031177589

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fabrication of Silicon Microchannel for Transport of Bacterial Cells by Ar/F2 Vapor Etching Process2013

    • Author(s)
      A. Matsutani, and A. Takada
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 52 Issue: 4R Pages: 47001-47001

    • DOI

      10.7567/jjap.52.047001

    • NAID

      210000141963

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] L-Glutamate Secretion by the N-Terminal domain of the Corynebacterium glutamicum NCgl1221 Mechanosensitive Channel2013

    • Author(s)
      Chikako Yamashita
    • Journal Title

      Biosci. Biotech. Biochem.

      Volume: 印刷中

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Microfabrication of Si and GaAs by Plasma Etching Process Using Bacterial Cells as an Etching Mask Material2012

    • Author(s)
      A. Matsutani and A. Takada
    • Journal Title

      Jpn. J. Appl. Phys

      Volume: 51 Issue: 8R Pages: 87001-87001

    • DOI

      10.1143/jjap.51.087001

    • NAID

      40019395655

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] InP 基板上に製作したマイクロ囲いを用いた出芽酵母の培養2013

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      化学とマイクロ・ナノシステム学会第28回研究会
    • Place of Presentation
      イーグレひめじ(姫路)
    • Year and Date
      2013-12-06
    • Related Report
      2013 Final Research Report
  • [Presentation] マイクロ牧場アレイを用いた出芽酵母の培養2013

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第74回応用物理学会秋季学術講演会
    • Place of Presentation
      同志社大学(京都)
    • Year and Date
      2013-09-16
    • Related Report
      2013 Final Research Report
  • [Presentation] Ar/F_2 気相エッチングにより製作したSi マイクロ流路を用いた大腸菌細胞の輸送2013

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第4回集積化MEMS 技術研究ワークショップ
    • Place of Presentation
      大阪府立大学(大阪)
    • Year and Date
      2013-07-26
    • Related Report
      2013 Final Research Report
  • [Presentation] Screening for inhibitors of Hfq - mediated RNA metabolism2013

    • Author(s)
      Ayako Takada, Masaaki Wachi
    • Organizer
      12th International Symposium on the Genetics of Industrial Microorganisms (GIM-2013)
    • Place of Presentation
      Cancun Convention Center(メキシコ)
    • Year and Date
      2013-06-26
    • Related Report
      2013 Final Research Report
  • [Presentation] マイクロピラー構造を用いた大腸菌と酵母の単一細胞分離とサイズ分離2013

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第60回応用物理学会春季学術講演会
    • Place of Presentation
      神奈川工科大学(神奈川)
    • Year and Date
      2013-03-27
    • Related Report
      2013 Final Research Report
  • [Presentation] RNA 代謝を標的とする新規薬剤の探索2013

    • Author(s)
      高田 綾子, 和地 正明
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学(宮城)
    • Year and Date
      2013-03-25
    • Related Report
      2013 Final Research Report
  • [Presentation] Single-Cell Isolation and Sizing of Microorganisms by Microenclosure Array with Multipillar Structure, MNC 20122012

    • Author(s)
      Akihiro Matsutani , Ayako Takada
    • Organizer
      25th International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      神戸メリケンパークオリエンタルホテル(兵庫)
    • Year and Date
      2012-11-01
    • Related Report
      2013 Final Research Report
  • [Presentation] Microfabrication of Single-Cell Isolation Structure On Vertical Cavity Surface Emitting Laser Wafer2012

    • Author(s)
      Akihiro Matsutani , Ayako Takada
    • Organizer
      Proceedings of the 29th Sensor Symposium on Sensors, Micromachines, and Applied Systems, 2012 Annual Conference of Sensors and Micromachines Society of IEEJ
    • Place of Presentation
      北九州国際会議場(福岡)
    • Year and Date
      2012-10-23
    • Related Report
      2013 Final Research Report
  • [Presentation] 半導体プロセスを用いた細胞サイズ分離用マイクロピラー構造の製作2012

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第73回応用物理学会学術講演会
    • Place of Presentation
      愛媛大学(愛媛)
    • Year and Date
      2012-09-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Ar/F_2 気相エッチングによる細菌細胞輸送用Si マイクロ流路の形成2012

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第59回応用物理学関係連合講演会
    • Place of Presentation
      早稲田大学(東京)
    • Year and Date
      2012-03-18
    • Related Report
      2013 Final Research Report
  • [Presentation] Ar/F2気相エッチングによる細菌細胞輸送用Siマイクロ流路の形成2012

    • Author(s)
      松谷 晃宏
    • Organizer
      第59回応用物理学関係連合講演会
    • Place of Presentation
      早稲田大学(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] 低圧プラズマプロセスによる細菌細胞の分解と細菌細胞を用いた半導体のドライエッチング2011

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      2011年度電気学会研究会 プラズマ/パルスパワー合同研究会
    • Place of Presentation
      東京工業大学(神奈川)
    • Year and Date
      2011-12-15
    • Related Report
      2013 Final Research Report
  • [Presentation] Ar/F_2 気相エッチングとプラズマエッチングによるSi マイクロ流路構造の形成2011

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      Plasma Conference 2011
    • Place of Presentation
      石川県立音楽堂(石川)
    • Year and Date
      2011-11-23
    • Related Report
      2013 Final Research Report
  • [Presentation] O_2 およびCl_2を用いた大腸菌のプラズマエッチング2011

    • Author(s)
      松谷 晃宏, 高田 綾子
    • Organizer
      第72回応用物理学会学術講演会
    • Place of Presentation
      山形大学(山形)
    • Year and Date
      2011-09-02
    • Related Report
      2013 Final Research Report
  • [Presentation] O2およびCl2を用いた大腸菌のプラズマエッチング2011

    • Author(s)
      松谷 晃宏
    • Organizer
      第72回応用物理学会学術講演会
    • Place of Presentation
      山形大学(山形県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Ar/F2気相エッチングによる極微小径Si マイクロ流路の形成2011

    • Author(s)
      松谷 晃宏
    • Organizer
      第24回化学とマイクロ・ナノシステム研究会
    • Place of Presentation
      大阪府立大学(大阪府)
    • Related Report
      2011 Research-status Report
  • [Presentation] Ar/F2気相エッチングとプラズマエッチングによるSiマイクロ流路構造の形成2011

    • Author(s)
      松谷 晃宏
    • Organizer
      Plasma Conference 2011
    • Place of Presentation
      石川県立音楽堂(石川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] 低圧プラズマプロセスによる細菌細胞の分解と細菌細胞を用いた半導体のドライエッチング2011

    • Author(s)
      松谷 晃宏
    • Organizer
      2011年度電気学会研究会 プラズマ/パルスパワー合同研究会
    • Place of Presentation
      東京工業大学(神奈川県)
    • Related Report
      2011 Research-status Report
  • [Presentation] Screening for inhibitors of Hfq-mediated RNA metabolism

    • Author(s)
      Ayako Takada
    • Organizer
      12th International Symposium on the Genetics of Industrial Microorganisms (GIM-2013)
    • Place of Presentation
      Cancun Convention Center(メキシコ)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Ar/F2 気相エッチングにより製作したSi マイクロ流路を用いた大腸菌細胞の輸送

    • Author(s)
      松谷晃宏
    • Organizer
      第4回集積化MEMS技術研究ワークショップ
    • Place of Presentation
      大阪府立大学(大阪)
    • Related Report
      2013 Annual Research Report
  • [Presentation] マイクロ牧場アレイを用いた出芽酵母の培養

    • Author(s)
      松谷晃宏
    • Organizer
      第74回応用物理学会秋季学術講演会
    • Place of Presentation
      同志社大学(京都)
    • Related Report
      2013 Annual Research Report
  • [Presentation] InP基板上に製作したマイクロ囲いを用いた出芽酵母の培養

    • Author(s)
      松谷晃宏
    • Organizer
      化学とマイクロ・ナノシステム学会第28回研究会
    • Place of Presentation
      イーグレひめじ(姫路)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 半導体プロセスを用いた細胞サイズ分離用マイクロピラー構造の製作

    • Author(s)
      松谷晃宏
    • Organizer
      第73回応用物理学会学術講演会
    • Place of Presentation
      愛媛大学(愛媛県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Microfabrication of single-cell isolation structure on vertical cavity surface emitting laser wafer

    • Author(s)
      Akihiro Matsutani
    • Organizer
      Proceedings of the 29th Sensor Symposium on Sensors, Micromachines, and Applied Systems,
    • Place of Presentation
      北九州国際会議場(福岡県)
    • Related Report
      2012 Research-status Report
  • [Presentation] Single-cell isolation and sizing of microorganisms by microenclosure array with multipillar structure

    • Author(s)
      Akihiro Matsutani
    • Organizer
      MNC 2012, 25th International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      神戸メリケンパークオリエンタルホテル(兵庫県)
    • Related Report
      2012 Research-status Report
  • [Presentation] RNA代謝を標的とする新規薬剤の探索

    • Author(s)
      髙田綾子
    • Organizer
      日本農芸化学会2013年度大会
    • Place of Presentation
      東北大学(宮城県)
    • Related Report
      2012 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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