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A bioinformatics approach toward understanding interplay betweenchronic virus infections and human antiviral immune responses

Research Project

Project/Area Number 23659232
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Virology
Research InstitutionKumamoto University

Principal Investigator

UENO Takamasa  熊本大学, エイズ学研究センター, 准教授 (10322314)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2011: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Keywords感染防御 / ワクチン / ウイルス / 感染症 / 進化 / HIV / 免疫回避
Research Abstract

HIV -1 Nef is required for efficient viral replication and pathogenesis. However , the extent to which Nef ’ s functions are maintained in natural sequences duringchronic infection, and their clinical relevance, remains incompletely characterized. Relativeto a control Nef from HIV -1 strain SF2, HLA class I and CD4 down-regulation activities of46 plasma RNA Nef sequences derived from unique chronic infected individuals weregenerally high and displayed narrow dynamic ranges, whereas Nef-mediated virioninfectivity , PBMC replication and CD74 up-regulation exhibited broader dynamic ranges.80% of patient-derived Nefs were active for at least three functions examined. Functionalco-dependencies were identified, including positive correlations between CD4down-regulation and virion infectivity , replication, and CD74 up-regulation, and betweenCD74 up-regulation and PBMC replication. Nef-mediated virion infectivity inverselycorrelated with patient CD4+ T -cell count. Strong functional co-dependencies and thepolyfunctional nature of patient-derived Nef sequences suggest a phenotypic requirementto maintain multiple Nef functions during chronic infection

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (12 results)

All 2013 2012 2011

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (8 results) (of which Invited: 1 results)

  • [Journal Article] Dynamic range of Nef functionsin chronic HIV-1 infection2013

    • Author(s)
      Philip Mwimanzi, Tristan J Markle,Yoko Ogata, Eric Martin, MichiyoTokunaga, Macdonald Mahiti, Xiaomei TKuang, Bruce D Walker, Zabrina L Brumme,Mark A Brockman and *Takamasa Ueno
    • Journal Title

      Virology

      Volume: 439 Issue: 2 Pages: 74-80

    • DOI

      10.1016/j.virol.2013.02.005

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Attenuation of multiple Neffunctions in HIV-1 elite controllers2013

    • Author(s)
      Philip Mwimanzi, Tristan J Markle,Eric Martin, Yoko Ogata, Xiaomei TKuang, Michiyo Tokunaga, MacdonaldMahiti, Florencia Pereyra, ToshiyukiMiura, Bruce D Walker, Zabrina L Brumme,Mark A Brockman and *Takamasa Ueno
    • Journal Title

      Retrovirology

      Volume: 10 Issue: 1 Pages: 1-1

    • DOI

      10.1186/1742-4690-10-1

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] HLA class I down-regulation by HIV-1Nef: What might we learn from naturalsequence variants?2013

    • Author(s)
      Philip Mwimanzi, Tristan J. Markle,Takamasa Ueno, Mark A. Brockman
    • Journal Title

      Viruses

      Volume: 4 Issue: 9 Pages: 1711-1730

    • DOI

      10.3390/v4091711

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of naturally-arising HIV Nefmutations on cytotoxic T lymphocyterecognition and Nef's functionality inprimary macrophages2011

    • Author(s)
      Philip Mwimanzi, Zafrul Hasan, RanyaHassan, Shinya Suzu, Masafumi Takiguchiand*TakamasaUeno
    • Journal Title

      etrovirology

      Volume: 8 Issue: 1 Pages: 50-50

    • DOI

      10.1186/1742-4690-8-50

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] Nef のウイルスレセプター発現低下機能と病態2012

    • Author(s)
      緒方陽子、Philip Mwimanzi、李小光、徳永美知代、Tristan Markle、三浦聡之、Bruce Walker 、Zabrina Brumme 、MarkBrockman、上野貴将
    • Organizer
      第26回日本エイズ学会学術集会・総会
    • Place of Presentation
      慶應義塾大学日吉キャンパス(神奈川)
    • Related Report
      2012 Final Research Report
  • [Presentation] Modulation of HIV-1Nef-mediated HLA class Idown-regulation activity duringdisease progression2012

    • Author(s)
      M. Mahiti, P. Mwimanzi, Y. Ogata, M.Tokunaga, B. Walker, Z. Brumme, M.Brockman, T. Ueno
    • Organizer
      13th KumamotoAIDS seminar Aso Resort GrandiovrioHotel
    • Place of Presentation
      Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] HIV-1 Nef の遺伝子多型性と機能的可塑性2012

    • Author(s)
      上野貴将
    • Organizer
      第14回白馬シンポジウムin 京都
    • Place of Presentation
      京都市国際交流会館
    • Related Report
      2012 Final Research Report
  • [Presentation] Nefのウイルスレセプター発現低下機能と病態2012

    • Author(s)
      緒方陽子
    • Organizer
      第26回日本エイズ学会学術集会・総会
    • Place of Presentation
      慶應義塾大学日吉キャンパス
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Nef のウイルスレセプター発現低下機能と病態2011

    • Author(s)
      緒方陽子、大津家裕仁、Philip Mwimanzi、徳永美知代、Tristan Markle、三浦聡之、Bruce Walker 、Zabrina Brumme 、MarkBrockman、上野貴将
    • Organizer
      一般演題「アクセサリー遺伝子-2」 第25回日本エイズ学会学術集会・総会
    • Place of Presentation
      ハイアットリージェンシー東京
    • Related Report
      2012 Final Research Report
  • [Presentation] Impact of HLA class I-drivengenetic variability in HIV-1 accessorygenes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      2011 The Annual Meeting of theJapanese Society for Immunology
    • Place of Presentation
      Chiba,Makuhari Messe, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Subtle effect of HLA classI-driven selective forces on thevariability of HIV-1 accessory genes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      12th Kumamoto AIDS Seminar and GCOEJoint International Symposium
    • Place of Presentation
      HotelNikko Kumamoto and Aso ResortGrandvrio Hotel, Kumamoto, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] Effect of HLA class I-mediatedselective pressure on HIV-1 accessorygenes2011

    • Author(s)
      Zafrul Hasan, J. Carlson, H. Gatanaga,A. Le, C. Brumme, S. Oka, Z. Brumme, T.Ueno
    • Organizer
      International Union ofMicrobiological Societies 2011Congress: Virus and host response
    • Place of Presentation
      Sapporo Convention Center, Sapporo,Japan
    • Related Report
      2012 Final Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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