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Comparison of genomic and epigenomicexpression in monozygotic twins using next-generation sequencing.

Research Project

Project/Area Number 23659519
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Pediatrics
Research InstitutionUniversity of Yamanashi

Principal Investigator

KUBOTA Takeo  山梨大学, 医学工学総合研究部, 教授 (70293511)

Co-Investigator(Kenkyū-buntansha) TOYODA Atsushi  国立遺伝学研究所, 生物遺伝資源情報総合センター, 特任准教授 (10267495)
SASAKI Masayuki  国立精神, 神経医療研究センター病院, 部長 (60235273)
Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsゲノム / 遺伝子 / 精神発達障害 / 双生児 / 次世代シーケンサー / エピジェネティクス / エピゲノム / 自閉症 / 神経疾患 / 双子 / レット症候群 / 比較 / 精神発達 / シーケンサー
Research Abstract

Discordance in disease manifestation between affected monozygotic twins has been attributed to either environmental factors or different patterns of X chromosome inactivation (XCI). However, recent studies have identified genetic and epigenetic differences between monozygotic twins, thereby challenging the accepted experimental model for distinguishing the effects of nature andnurture. Here, we report the genomic and epigenomic sequences in skin fibroblasts of a discordant monozygotic twin pair with Rett syndrome, an X-linked neurodevelopmental disorder characterized by autistic features, epileptic seizures, gait ataxia and stereotypical hand movements. In the twins, no reproducible differences were detected between the twins in single nucleotide polymorphisms (SNPs), insertion-deletion polymorphisms (indels), or copy number variations. Differences in DNA methylation between the twins were detected in fibroblasts in the upstream regions of genes involved in brain function and skeletal tissues, and thus, the differences in DNA methylation patterns likely underlie the discordance in Rett phenotypes between the twins.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (34 results)

All 2013 2012 2011 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (15 results) (of which Invited: 2 results) Book (5 results) Remarks (3 results)

  • [Journal Article] Comparison of genomic and epigenomic expression in monozygotic twins discordant for Rett syndrome2013

    • Author(s)
      Miyake K,Yang C,Minakuchi Y, OhoriK,Soutome M,HirasawaT,KazukiY, Adachi N,Suzuki S, Itoh M, Goto Y, Andoh T, KurosawaH, OshimuraM, SasakiM, Toyoda A, Kubota T
    • Journal Title

      PLoS ONE

      Volume: (印刷中)

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] subtelomere deletion with congenital glaucoma, severe mental retardation, and growth impairment2013

    • Author(s)
      Nakane T, Nakamura K, Hata S, Kamiya Y, Sato H, Kubota T, Sugita K
    • Journal Title

      Pediatr Int

      Volume: Vol.55、No.3 Pages: 376-381

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of genomic and epigenomic expression in monozygotic twins discordant for Rett syndrome.2013

    • Author(s)
      Miyake K, et al.
    • Journal Title

      PloS ONE

      Volume: 印刷中

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epigenetic understanding of gene-environment interactions in psychiatric disorders: a new concept of clinical genetics.2012

    • Author(s)
      Kubota T, et al.
    • Journal Title

      Clin Epigenetics

      Volume: 4 Issue: 1 Pages: 1-1

    • DOI

      10.1186/1868-7083-4-1

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epigenetic Mechanisms and Therapeutic Perspectives for Neurodevelopmental Disorders.2012

    • Author(s)
      Kubota T, Hirasawa T, Miyake K.
    • Journal Title

      Pharmaceuticals

      Volume: 5 Pages: 369-383

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spread of X-chromosome inactivation into chromosome 15 is associated with Prader-Willi syndrome phenotype in a boy with a t(X;15)(p21.1;q11.2) translocation.2012

    • Author(s)
      Sakazume S, et al.
    • Journal Title

      Hum Genet

      Volume: 131 Issue: 1 Pages: 121-130

    • DOI

      10.1007/s00439-011-1051-4

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Copy number variations due to large genomic deletion in X-linked chronic granulomatous disease2012

    • Author(s)
      Arai, T., et al
    • Journal Title

      PLoS One

      Volume: 7 Issue: 2 Pages: e27782-e27782

    • DOI

      10.1371/journal.pone.0027782

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The incidence of hypoplasia of the corpus callosum in patients with dup (X)(q28) involving MECP2 is associated with the location of distal breakpoints.2012

    • Author(s)
      Honda S, et al.
    • Journal Title

      Am J Med Genet

      Volume: 158A Issue: 6 Pages: 1292-1303

    • DOI

      10.1002/ajmg.a.35321

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spread of X-chromosome inactivation into chromosome 15 is associated with Prader-Willi syndrome phenotype in a boy with a t(X;15)(p21.1;q11.2) translocation.2012

    • Author(s)
      Sakazume S, Ohashi H, Sasaki Y, Harada N, Nakanishi K, Sato H, Emi M, Endoh K, Sohma R, Kido Y, Nagai T, Kubota T.
    • Journal Title

      Hum Genet

      Volume: 131 Pages: 121-130

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kubota T, Miyake K, Hirasawa T.Epigenetic understanding of gene-environment interactions in psychiatric disorders: a new concept of clinical genetics.2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T
    • Journal Title

      Clin Epigenetics

      Volume: 4

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] The protocadherins, PCDHB1 and PCDH7, are regulated by MeCP2 in neuronal cells and brain tissues: implication for pathogenesis of Rett syndrome.2011

    • Author(s)
      Miyake K, Hirasawa T, Soutome M, Itoh M, Goto Y, Endoh K, Takahashi K, Kudo S, Nakawaga T, Yokoi S, Taira T, Inazawa J, Kubota T
    • Journal Title

      BMC Neurosci

      Volume: 12

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 母子分離ストレスによるマウス脳海馬領域のグルココルチコイド受容体の発現変化2012

    • Author(s)
      平澤孝枝、石田哲史、田原佑里子、三宅邦夫、久保田健夫
    • Organizer
      第6回日本エピジェエティクス研究会
    • Place of Presentation
      東京
    • Related Report
      2012 Final Research Report
  • [Presentation] エピゲノム解析より推定された受精後転座による派生染色体の形成.2012

    • Author(s)
      坂爪悟、永井敏郎、城戸康宏、大橋博文、久保田健夫
    • Organizer
      第115回日本小児科学会学術集会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 母子分離ストレスによるマウス脳海馬領域のグルココルチコイド受容体の発現変化.2012

    • Author(s)
      平澤孝枝 石田哲史 田原佑里子 三宅邦夫 久保田健夫.
    • Organizer
      第6回日本エピジェエティクス研究会
    • Place of Presentation
      学術総合センター(東京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] プラダーウィリー症候群の遺伝子検査:診断確定と治療法選択への貢献.2012

    • Author(s)
      久保田健夫、根元篤、中根貴弥.
    • Organizer
      第19回日本遺伝子診療学会大会
    • Place of Presentation
      三井ガーデンホテル(千葉県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Validation of DOHaD theory using mouse model: Effect of nutritional condition on gene expression of neonate brain and liver.2012

    • Author(s)
      Furuse T, Kohda T, Kushida T, Yamada I, Miura I, Ozaki A, Kaneda H, Kobayash K, Ishino F, Kubota T, Wakana S.
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 次世代シークエンサーにより、原因遺伝子の同定に至ったCVIDの1例.2012

    • Author(s)
      釜江智佳子、満生紀子、小原明、野口恵美子、久保田健夫、本間健一、小原収、今井耕輔、野々山恵章.
    • Organizer
      第3回関東甲越免疫不全症研究会
    • Place of Presentation
      ベルサール八重洲(東京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 2型ICF症候群の原因遺伝子候補ZBTB24の機能解析.2012

    • Author(s)
      新田洋久、久保田健夫、古庄知己、高橋浩士、佐々木裕之.
    • Organizer
      日本人類遺伝学会第57回大会
    • Place of Presentation
      京王プラザホテル(東京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Mental stress in perinatal period causes metabolic dysregulation assocaited with the concept of Developmental Origins of health and diseases (DOHaD).2012

    • Author(s)
      Hirasawa T, Tahara Y, Satoshi I, Obata C, Kubota T.
    • Organizer
      第34回日本分子生物学会年年会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] No evidence of genetic difference for clinical severity between monozygotic twins with Rett syndrome.2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T, Minakuchi Y, Toyoda A.
    • Organizer
      The American society of Human Genetics 62nd Annual Meeting
    • Place of Presentation
      サンフランシスコ国際会議場(米国)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 特別講演「エピジェネティクス~小児の発達に関わる新しい遺伝学的メカニズム~」.2012

    • Author(s)
      久保田健夫
    • Organizer
      第71回東京矯正歯科学会大会
    • Place of Presentation
      有楽町朝日ホール(東京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 基本講座 いまさら聞けない遺伝医学「エピジェネティクス、基本を教えて」.2012

    • Author(s)
      久保田健夫
    • Organizer
      日本人類遺伝学会第57回大会
    • Place of Presentation
      京王プラザホテル(東京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Idenfiticaiton of MeCP2-target synaptic molecules associated with pathogenesis of Rett syndrome2011

    • Author(s)
      Miyake K, Hirasawa T, Kubota T
    • Organizer
      第34回日本分子生物学会年年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-14
    • Related Report
      2012 Final Research Report
  • [Presentation] The epigenetic regulation of glucocorticoid receptors in juvenile maternal separation stress2011

    • Author(s)
      Hirasawa T, Ishida I, Miyake K, Endo A, Kubota T
    • Organizer
      The 32nd Naito Conference (Yamanashi)
    • Place of Presentation
      Yamanashi
    • Related Report
      2012 Final Research Report
  • [Presentation] Idenfiticaiton of MeCP2-target synaptic molecules associated with pathogenesis of Rett syndrome.2011

    • Author(s)
      Miyake K, Hirasawa T, Kubota T.
    • Organizer
      第34回日本分子生物学会年年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Presentation] レット症候群の治療にむけた研究展開. シンポジウム3「Rett症候群の治療に向けた研究展開」2011

    • Author(s)
      久保田健夫、三宅邦夫、平澤孝枝.
    • Organizer
      第53回日本小児神経学会総会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Related Report
      2011 Research-status Report
  • [Book] Chapter: Epigenetic Modulation of Human Neurobiological Disorders2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T, Onaka T, Yamasue H
    • Publisher
      Elisevier(印刷中)
    • Related Report
      2012 Final Research Report
  • [Book] The Mechanisms of DNA Replictaion2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T. Section 4
    • Publisher
      Chromatin and Epigenetic Influences on DNA Replication, Chapter 13: The Mechanism of Epigenetic Modifications during DNA Replication
    • Related Report
      2012 Final Research Report
  • [Book] Chapter: Epigenetic Modulation of Human Neurobiological Disorders. Chapter: Epigenetic Modulation of Human Neurobiological Disorders. In “Epigenetics in human disease”.2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T, Onaka T, Yamasue H.
    • Total Pages
      592
    • Publisher
      Elisevier
    • Related Report
      2012 Annual Research Report
  • [Book] Section 4: Chromatin and Epigenetic Influences on DNA Replication, Chapter 13: The Mechanism of Epigenetic Modifications during DNA Replication. In "The Mechanisms of DNA Replictaion”.2012

    • Author(s)
      Kubota T, Miyake K, Hirasawa T.
    • Total Pages
      487
    • Publisher
      Intech (Open Access Publisher)
    • Related Report
      2012 Annual Research Report
  • [Book] Neurodegenerative Diseases2011

    • Author(s)
      Miyake K, Hirasawa T, Koide T, Kubota T.
    • Publisher
      Springer Science+Business Media, LLC Landes Bioscience
    • Related Report
      2011 Research-status Report
  • [Remarks] (山梨大学医学部環境遺伝医学講座)

    • URL

      http://www.epigenetmed.com

    • Related Report
      2012 Final Research Report
  • [Remarks] 山梨大学 大学院医学工学総合研究部 環境遺伝医学講座

    • URL

      http://www.epigenetmed.com/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.epigenetmed.com/

    • Related Report
      2011 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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