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Study on the roles of internal and external factors in active self-organization of biomolecular motor

Research Project

Project/Area Number 23681019
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Nanomaterials/Nanobioscience
Research InstitutionHokkaido University

Principal Investigator

AKIRA Kakugo  北海道大学, 理学(系)研究科(研究院), 准教授 (10374224)

Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥27,950,000 (Direct Cost: ¥21,500,000、Indirect Cost: ¥6,450,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2012: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2011: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Keywords生体分子モーター / 能動的自己組織化 / 螺旋構造 / 気液界面 / 伸展刺激 / 力学刺激 / 能動的集積法
Research Abstract

We have developed a method to integrate biomolecular motors system, microtubule and kinesin, into assembled structures through active self-organization. Here, we examined the roles of internal and external factors in active self-organization of microtubule. We found that 1) lattice structure of microtubule is a key factor by tuning which the rotational motion of ring-shaped microtubule assembly could be controlled, 2) interface such as boundary between air and buffer has a pronounced effect on the morphology and organization of microtubule and 3) external perturbation, e.g., stretching stimuli can be employed to regulate the morphology of microtubule assemblies which in turn resulted in highly ordered structure with a specific orientation.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (51 results)

All 2014 2013 2012 2011 2010 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (37 results) (of which Invited: 2 results) Remarks (4 results)

  • [Journal Article] Growth of Ring Shaped Microtubule Assemblies through Stepwise Active Self-Organisation2013

    • Author(s)
      Daisuke Inoue, Arif Md. Rashedul Kabir, Hiroyuki Mayama, Jian Ping Gong, Kazuki Sada and Akira Kakugo
    • Journal Title

      Soft-Matter

      Volume: 9 Pages: 7061-7068

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Formation of Ring-Shaped Microtubule Assemblies through Active Self-Organization on Dynein2013

    • Author(s)
      Masaki Ito, Arif Md Rashedul Kabir, Daisuke Inoue, Takayuki Torisawa, Yoko Toyoshima, Kazuki Sada, Akira Kakugo
    • Journal Title

      Polymer Journal

      Volume: 46 Issue: 4 Pages: 220-225

    • DOI

      10.1038/pj.2013.89

    • NAID

      120005515308

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of ring-shaped assembly of microtubules with a narrow size distribution at an air–buffer interface2012

    • Author(s)
      Arif Md. Rashedul Kabir, Shoki Wada, Daisuke Inoue, Yoshiki Tamura, Tamaki Kajiwara, Hiroyuki Mayama, Kazuki Sada, Akira Kakugo, JianPing Gong
    • Journal Title

      Soft-Matter

      Volume: 8 Pages: 10863-10867

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nematic growth of microtubules that changed into giant spiral structure through partial depolymerization and subsequent dynamic ordering2012

    • Author(s)
      Kiyotaka Shigehara
    • Journal Title

      Soft-Matter

      Volume: 8 Pages: 11544-11551

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ormation of ring-shaped assembly of microtubules with a narrow size distribution at an air–buffer interface2012

    • Author(s)
      Arif Md. Rashedul Kabir
    • Journal Title

      Soft-Matter

      Volume: 8 Pages: 10863-10867

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Controlled Clockwise-counterclockwise Motion of the Ring-shaped Microtubules Assembly2011

    • Author(s)
      Akira. Kakugo, Arif Md. Rashedul Kabir, Natsuki Hosoda, Kazuhiro Shikinaka, Jian Ping Gong
    • Journal Title

      Biomacromolecules

      Volume: 12 (10)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic self-organization and polymorphism of microtubule assembly through active interactions with kinesin2011

    • Author(s)
      Yoshiki Tamura, Ryuzo Kawamura, Kazuhiro Shikinaka, Akira Kakugo, Yoshihito Osada, Jian Ping Gong, Hiroyuki Mayama
    • Journal Title

      Soft Matter

      Volume: 7 Pages: 5654-5659

    • NAID

      120003974398

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Controlled Clockwise-Counterclockwise Motion of the Ring-Shaped Microtubules Assembly2011

    • Author(s)
      Akira Kakugo, Arif MD.Rashedul Kabir, Natsuki Hosoda, Kazuhiro Shikinaka, JianPing Gong
    • Journal Title

      Biomacromolecules

      Volume: 12 Pages: 3394-3399

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prolongation of the Active Lifetime of a Biomolecular Motor for in Vitro Motility Assay by Using an Inert Atmosphere2010

    • Author(s)
      Arif MD.Rashedul Kabir, Daisuke Inoue, Akira Kakugo, Akiko Kamei, JianPing Gong
    • Journal Title

      Langmuir

      Volume: 27 Pages: 13659-13668

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Active self-organization of microtubules in an inert chamber system

    • Author(s)
      Arif MD.Rashedul Kabir, Daisuke Inoue, Akira Kakugo, Kazuki Sada, JianPing Gong
    • Journal Title

      Polymer Journal

      Volume: (印刷中)

    • NAID

      10030599342

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 微小管リング状集合体のサイズ制御法の確立2014

    • Author(s)
      和田 将輝, Arif MD. Rashedul Kabir, 伊藤 正樹, 井上 大介, 佐田 和己, 角五 彰
    • Organizer
      第25回高分子ゲル研究討論会
    • Place of Presentation
      東京大学(文京区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 力学刺激を用いた生体分子モーター微小管集団の運動方向制御2014

    • Author(s)
      井上大介, 佐田和己, 角五彰
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学(名古屋)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生体分子モーターを動力源とするアメーバ型分子ロボットの開発2013

    • Author(s)
      角五彰
    • Organizer
      分子ロボティクス研究会定例会
    • Place of Presentation
      福岡工業大学、福岡
    • Year and Date
      2013-02-02
    • Related Report
      2013 Final Research Report
  • [Presentation] Active Self-organization of Biomolecular Motors2013

    • Author(s)
      Akira Kakugo
    • Organizer
      International Symposium on Advanced Soft Materials
    • Place of Presentation
      Hokkaido University, Sapporo
    • Related Report
      2013 Final Research Report
  • [Presentation] How to Integrate Bio-molecular Motors towards Bio-Actuators Fueled by ATP2013

    • Author(s)
      Akira Kakugo
    • Organizer
      IUMRS-ICEM2012
    • Place of Presentation
      PACIFICO(神奈川)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 界面を用いた微小管リング状集合体の集積法の確立2013

    • Author(s)
      和田 将輝, Arif MD. Rashedul Kabir, 伊藤 正樹, 井上 大介, 佐田 和己, 角五 彰
    • Organizer
      2013年度 北海道高分子若手研究会
    • Place of Presentation
      ホテル山渓苑(北海道)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Formation of ring-shaped assembly of microtubules with a narrow size distribution at an air-buffer interface2013

    • Author(s)
      和田 将輝, Arif MD. Rashedul Kabir, 伊藤 正樹, 井上 大介, 佐田 和己, 角五 彰
    • Organizer
      International Symposium on Advanced Soft Materials
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Research for ring-shaped microtubules assemblies formed at the air-buffer interface2013

    • Author(s)
      和田 将輝, Arif MD. Rashedul Kabir, 伊藤 正樹, 井上 大介, 佐田 和己, 角五 彰
    • Organizer
      The 14th RIES-Hokudai International Symposium
    • Place of Presentation
      Gateaux Kingdom SAPPORO(北海道)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Formation of ring-shaped microtubule assemblies driven by dynein2013

    • Author(s)
      Masaki Ito, Daisuke Inoue, Takayuki Torisawa, Yoko Toyoshima, Kazuki Sada, and Akira Kakugo
    • Organizer
      International Symposium on Advanced Soft Materials
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Formation of Ring-Shaped Microtubule Assembliesthrough Active Self-organization on Dynein fixed Surface2013

    • Author(s)
      Masaki Ito, Daisuke Inoue, Takayuki Torisawa, Yoko Toyoshima, Kazuki Sada, and Akira Kakugo
    • Organizer
      The 14th RIES-Hokudai International Symposium
    • Place of Presentation
      Gateaux Kingdom SAPPORO(北海道)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 生体分子モーターを基盤とした動的ネットワークの 構築とその力学応答特性2013

    • Author(s)
      井上大介, 佐田和己, 角五彰
    • Organizer
      第62回高分子討論会
    • Place of Presentation
      金沢大学(金沢)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 伸縮自在な基板を用いた微小管の運動速度制御2013

    • Author(s)
      井上大介, 佐田和己, 角五彰
    • Organizer
      第62回高分子討論会
    • Place of Presentation
      金沢大学(金沢)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Collective response of dynamic microtubule network to external mechanical perturbation2013

    • Author(s)
      Daisuke Inoue, Kazuki Sada, Akira Kakugo
    • Organizer
      International Symposium on Advanced Soft Materials
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Collective response of dynamic microtubule network to external mechanical perturbation2013

    • Author(s)
      Daisuke Inoue, Kazuki Sada, Akira Kakugo
    • Organizer
      Frontier Chemistry Center The 2nd International Symposium on Advanced Materials Science
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Growth of multilayered ring-shaped microtubule assemblies through stepwise active self-organization2013

    • Author(s)
      Arif Md. Rashedul Kabir, Daisuke Inoue, Hiroyuki Mayama, Kazuki Sada, Akira Kakugo
    • Organizer
      62nd Symposium on Macromolecules
    • Place of Presentation
      Kanazawa Univ. (Kanazawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Shear stress induced fragmentation of microtubules2013

    • Author(s)
      Arif Md. Rashedul Kabir, Daisuke Inoue, Hiroyuki Mayama, Kazuki Sada, Akira Kakugo
    • Organizer
      62nd Symposium on Macromolecules
    • Place of Presentation
      Kanazawa Univ. (Kanazawa)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Shear stress induced fragmentation of microtubules2013

    • Author(s)
      Arif Md. Rashedul Kabir, Daisuke Inoue, Hiroyuki Mayama, Kazuki Sada, Akira Kakugo
    • Organizer
      International Symposium on Advanced Soft Materials
    • Place of Presentation
      Hokkaido univ. (Sapporo)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Shear stress induced fragmentation of microtubules2013

    • Author(s)
      Arif Md. Rashedul Kabir, Daisuke Inoue, Hiroyuki Mayama, Kazuki Sada, Akira Kakugo
    • Organizer
      The 14th RIES-Hokudai International Symposium
    • Place of Presentation
      Gateaux Kingdom SAPPORO(北海道)
    • Related Report
      2013 Annual Research Report
  • [Presentation] 物質界面で形成される微小管リングサイズ制御とリング形成メカニズムの解明2013

    • Author(s)
      和田 将輝
    • Organizer
      化学系学協会北海道支部 2013年 冬季研究発表会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 気液界面で発現する微小管集合体の多様なパターン形成2013

    • Author(s)
      和田 将輝
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス(草津市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞骨格系(微小管)を対象としたフラグメンテーション試験法の開発とその破壊モデル2013

    • Author(s)
      濱野芳美
    • Organizer
      2013年化学系学協会北海道支部冬季研究発表会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 動的ネットワークシステムの構築とその自立応答性2013

    • Author(s)
      井上大介
    • Organizer
      第24回高分子ゲル研究討論会
    • Place of Presentation
      東京大学山上会館(東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] エネルギー散逸系で生まれるマイクロチューブル群の構造秩序2012

    • Author(s)
      角五彰
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応大学(横浜)(招待講演)
    • Year and Date
      2012-03-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] How to Integrate Bio-molecular Motors towards Bio-Actuators Fueled by ATP2012

    • Author(s)
      Akira Kakugo
    • Organizer
      International Union of Materials Research Societies (IUMRS-ICEM2012)
    • Place of Presentation
      PACIFICO, Yokohama
    • Related Report
      2013 Final Research Report
  • [Presentation] Organization of molecular motor through an energy dissipative Process2012

    • Author(s)
      Akira Kakugo
    • Organizer
      Collaborative Conference on Materials Research (CCMR) 2012
    • Place of Presentation
      Seoul Palace Hotel, Korea
    • Related Report
      2013 Final Research Report
  • [Presentation] Organization of molecular motor through an energy dissipative Process」2012

    • Author(s)
      Akira Kakugo
    • Organizer
      Collaborative Conference on Materials Research (CCMR) 2012
    • Place of Presentation
      Seoul Palace Hotel, Seoul, Korea
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 静的・動的伸展場における生体分子モーター(微小管/キネシン系)の運動特性2012

    • Author(s)
      井上大介
    • Organizer
      第61回高分子討論会
    • Place of Presentation
      名古屋工業大学(名古屋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 逆行性分子モーターダイニンにより集積されたマイクロチューブル群の運動特性2012

    • Author(s)
      伊藤正樹
    • Organizer
      第61回高分子討論会
    • Place of Presentation
      名古屋工業大学(名古屋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 能動的自己組織化過程で生まれるマイクロチューブル群の運動特性2012

    • Author(s)
      井上大介
    • Organizer
      第61回高分子討論会
    • Place of Presentation
      名古屋工業大学(名古屋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] リング状マイクロチューブル群の回転方向制御2012

    • Author(s)
      角五彰
    • Organizer
      第61回高分子討論会
    • Place of Presentation
      名古屋工業大学(名古屋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 逆行性分子モーターダイニンにより形成されるマイクロチューブル集合体の運動特性2012

    • Author(s)
      伊藤正樹
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 胞骨格(微小管)を対象としたフラグメンテーション試験法の開発とその破壊挙動の評価2012

    • Author(s)
      濱野芳美
    • Organizer
      第27回生体機能関連化学シンポジウム 若手フォーラム
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞骨格系を対象としたフラグメンテーション試験法の開発と微小管をモデルとした破壊挙動の評価2012

    • Author(s)
      濱野芳美
    • Organizer
      2012年度北海道高分子若手研究会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 逆行性分子モーターダイニンにより集積された微小管群の運動特性2012

    • Author(s)
      伊藤正樹
    • Organizer
      2012年度北海道高分子若手研究会
    • Place of Presentation
      北海道大学(札幌市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Formation of ring-shaped microtubule assemblies driven by dynein2012

    • Author(s)
      Masaki Ito
    • Organizer
      Challenges in Advances Chemistry of Asia Frontier” Chemistry Center (FCC) International Symposium,
    • Place of Presentation
      Hokkaido university (Sapporo)
    • Related Report
      2012 Annual Research Report
  • [Presentation] How to Integrate Bio-molecular Motors towards Bio-Actuators Fueled by ATP2012

    • Author(s)
      Akira Kakugo
    • Organizer
      International Union of Materials Research Societies (IUMRS-ICEM2012)
    • Place of Presentation
      Pacifico Yokohama (Yokohama)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞骨格の高次構造形成におけるATPエネルギーの重要性2011

    • Author(s)
      角五彰
    • Organizer
      第63回コロイドおよび界面化学討論会
    • Place of Presentation
      京都大学(京都)(招待講演)
    • Year and Date
      2011-09-07
    • Related Report
      2011 Annual Research Report
  • [Remarks] 物質化学研究室

    • URL

      http://wwwchem.sci.hokudai.ac.jp/matchemS/en/

    • Related Report
      2012 Annual Research Report
  • [Remarks] 分子ロボティクス研究会

    • URL

      http://molbot.org/

    • Related Report
      2012 Annual Research Report
  • [Remarks] エキゾチック自己組織化材料‐日本化学会

    • URL

      http://exotic.chemistry.or.jp/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://wwwchem.sci.hokudai.ac.jp/~matchemS/index.php

    • Related Report
      2011 Annual Research Report

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Published: 2011-04-06   Modified: 2019-07-29  

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