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Development of methods for controlling fluid dynamics of single molecules using gating nanopore devices

Research Project

Project/Area Number 23681031
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Microdevices/Nanodevices
Research InstitutionOsaka University

Principal Investigator

TANIGUCHI Masateru  大阪大学, 産業科学研究所, 教授 (40362628)

Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥26,910,000 (Direct Cost: ¥20,700,000、Indirect Cost: ¥6,210,000)
Fiscal Year 2013: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2012: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2011: ¥14,430,000 (Direct Cost: ¥11,100,000、Indirect Cost: ¥3,330,000)
Keywordsゲーティングナノポア / ナノポア / 単分子 / 流動制御 / 生体分子 / 1分子科学 / 1分子技術 / DNAシークエンサー / 単分子流動 / 1分子解析技術 / トンネル伝導 / DNAシーケンサー / トンネル電流 / 1分子科学 / 1分子技術
Research Abstract

The method, which is used to control the translocation speed of a single DNA and RNA molecule, is a key technology used for identifying base molecules with high accuracy and throughput. We developed surrounding gate nanopores, which consist of a gating nanopore and gate electrode. We demonstrated the calculated gate voltage dependence of the DNA translocation velocity, using theoretical simulations. In addition, in an effort to demonstrate the control method for the translocation speed using gate voltage, we fabricated a surrounding gate nanopore with a diameter of 20 nm. The translocation time was found to be 35 ms without a gate voltage. On applying a gate voltage of -0.5 V, we obtained slower translocation times of the order of approximately 350 ms, which is caused by the upward electro-osmotic flow. Thus, we demonstrated that surrounding gate nanopores can control the translocation speed of single DNA and RNA molecules using gate voltages.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (56 results)

All 2014 2013 2012 2011 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (42 results) (of which Invited: 33 results) Remarks (1 results)

  • [Journal Article] graphene/hexagonal boron nitride/graphene nanopore for electrical detection of single molecules2014

    • Author(s)
      Y. He, M. Tsutsui, S. Ryuzaki, K. Yokota, M. Taniguchi, T. Kawai
    • Journal Title

      NPG Asia Materials

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fabrications of insulator-protected nanometer-sized electrode gaps2014

    • Author(s)
      A. Arima, M. Tsutsui, T. Morikawa, K. Yokota, M. Taniguchi
    • Journal Title

      J. Appl.Phys

      Volume: 115 Issue: 11 Pages: 114310-114310

    • DOI

      10.1063/1.4869135

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nonequilibrium Ionic Response of Biased Mechanically Controllable Break Junction (MCBJ) Electrodes2014

    • Author(s)
      Kentaro DOI, Makusu TSUTSUI, Takahito OHSHIRO, Chih-Chun CHIEN, Michael ZWOLAK, Masateru TANIGUCHI, Tomoji KAWAI, Satoyuki KAWANO, and Massimiliano Di VENTRA
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 118 Issue: 7 Pages: 3758-3765

    • DOI

      10.1021/jp409798t

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Graphene/hexagonal Boron Nitride/Graphene Nanopore for Electrical Detection of Single Molecules2014

    • Author(s)
      Y. He, M. Tsutsui, S. Ryuzaki, K. Yokota, M. Taniguchi, and T. Kawai
    • Journal Title

      NPG Asia Materials

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of howsalt-gradient-induced charges affect the translocation of DNA molecules through a nanopore2013

    • Author(s)
      Y. He, M. Tsutsui, R. H. Scheicher, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      Biophys. J

      Volume: 105 Issue: 3 Pages: 776-782

    • DOI

      10.1016/j.bpj.2013.05.065

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Trapping and Identifying Single-Nanoparticles Using a Low-Aspect-Ratio Nanopore2013

    • Author(s)
      Makusu TSUTSUI, Yoichi MAEDA, Yuhui HE, Sadato HONGO, Sou RYUZAKI, Satoyuki KAWANO, Tomoji KAWAI, and Masateru TANIGUCHI
    • Journal Title

      Applied Physics Letters

      Volume: 103 Issue: 1 Pages: 23112-23112

    • DOI

      10.1063/1.4813084

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Tracking Single-Particle Dynamics via Combined Optical and Electrical Sensing2013

    • Author(s)
      Naoya YUKIMOTO, Makusu TSUTSUI, Yuhui HE, Hirofumi SHINTAKU, Shoji TANAKA, Satoyuki KAWANO, Tomoji KAWAI, and Masateru TANIGUCHI
    • Journal Title

      Scientific Reports

      Volume: 3 Issue: 1 Pages: 1-7

    • DOI

      10.1038/srep01855

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thermophoretic manipulation of DNA translocation through nanopores2013

    • Author(s)
      Y. He, M.Tsutsui, R. H. Scheicher, F. Bai, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 7 Issue: 1 Pages: 538-546

    • DOI

      10.1021/nn304914j

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA capture in nanopores forgenome sequencing : challenges and opportunities2012

    • Author(s)
      Y. He, M. Tsutsui, M. Taniguchi, T. Kawai
    • Journal Title

      J. Mater. Chem

      Volume: 22 Issue: 27 Pages: 13423-13427

    • DOI

      10.1039/c2jm31495a

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transverse electric field dragging of DNA in a nanochannel2012

    • Author(s)
      M. Tsutsui, Y. He, M. Furuhashi, S.Rahong, M. Taniguchi, T. Kawai
    • Journal Title

      Sci. Rep

      Volume: 2 Issue: 1 Pages: 394-394

    • DOI

      10.1038/srep00394

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Controlling DNA translocation through gate modulation of nanopore wall surface charges2011

    • Author(s)
      Y. He, M. Tustsui, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 5 Issue: 7 Pages: 5509-5518

    • DOI

      10.1021/nn201883b

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule Sensing Electrode Embedded in-plane Nanopore2011

    • Author(s)
      Tomoji Kawai
    • Journal Title

      Scientific Reports

      Volume: 1 Issue: 1 Pages: 1-6

    • DOI

      10.1038/srep00046

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gate manipulation of DNA capture into nanopores2011

    • Author(s)
      Y. He, M. Tustsui, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 5 Issue: 10 Pages: 8391-8397

    • DOI

      10.1021/nn203186c

    • Related Report
      2013 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Single molecule sequencing2014

    • Author(s)
      M. Taniguchi
    • Organizer
      Pioneer Workshop 2014 on nanopore and nanofluidics – Physics and application as Biodevices
    • Place of Presentation
      大阪大学 産業科学研究所 (大阪府茨木市)
    • Year and Date
      2014-02-07
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single molecule electrical sensing technologies2014

    • Author(s)
      M. Taniguchi
    • Organizer
      The 17th SANKEN International Symposium-Joined with The 2nd International Symposiumu of Nano-Micro Materials, Devices, and System Research Alliance Project
    • Place of Presentation
      大阪大学 銀杏会館 (大阪府吹田市)
    • Year and Date
      2014-01-21
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ゲーティングナノポアを用いた DNA シークエンサー2013

    • Author(s)
      谷口正輝
    • Organizer
      2013年真空・表面科学合同講演会 第33回表面科学学術講演会 第54回真空に関する連合講演会
    • Place of Presentation
      つくば国際会議場 (茨城県つくば市)
    • Year and Date
      2013-11-26
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and microRNA2013

    • Author(s)
      谷口正輝
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2013-10-28
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and RNA2013

    • Author(s)
      M. Taniguchi
    • Organizer
      APS March Meeting 2013
    • Place of Presentation
      Baltimore Convention Center (Maryland, USA)
    • Year and Date
      2013-03-21
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 1分子科学を用いるバイオナノデバイス2013

    • Author(s)
      谷口正輝
    • Organizer
      東北大学通研/阪大産研 研究交流会
    • Place of Presentation
      大阪大学産業科学研究所 (大阪府茨木市)
    • Year and Date
      2013-03-15
    • Related Report
      2013 Final Research Report
  • [Presentation] 1分子シークエンサーの開発2013

    • Author(s)
      谷口正輝
    • Organizer
      (独)産業技術総合研究所 ナノシステム研究部門 講演会
    • Place of Presentation
      (独)産業技術総合研究所 (茨城県つくば市)
    • Year and Date
      2013-02-25
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Tunneling nanopore /nanochannel for next generation DNA2013

    • Author(s)
      M. Taniguchi
    • Organizer
      Pioneer Workshop on Nanopore
    • Place of Presentation
      Seoul National University (Seoul, SouthKorea)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] tunneling nanopore / nanochannel for next generation DNA2013

    • Author(s)
      Masateru Taniguchi
    • Organizer
      Pioneer Workshop on Nanopore
    • Place of Presentation
      Hoam Faculty House, Seoul National Univ.(Seoul, South Korea)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子科学と1分子デバイス2012

    • Author(s)
      谷口正輝
    • Organizer
      第6回有機π電子系シンポジウム
    • Place of Presentation
      道後温泉 茶波瑠(愛媛県松山市)
    • Year and Date
      2012-12-14
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 1分子を解析するナノポアデバイス2012

    • Author(s)
      谷口正輝
    • Organizer
      学術振興会174委員会 第40回研究会
    • Place of Presentation
      京都テルサ(京都府京都市)
    • Year and Date
      2012-09-28
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 1分子エピゲノム解析技術の開発2012

    • Author(s)
      谷口正輝
    • Organizer
      大阪大学 蛋白質研究所セミナー エピゲノム解析の新技術とエピジェネティクス制御機構の新展開
    • Place of Presentation
      大阪大学 蛋白質研究所(大阪府吹田市)
    • Year and Date
      2012-09-27
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ナノポアデバイスの1分子科学2012

    • Author(s)
      谷口正輝
    • Organizer
      文部科学省・科学研究費補助金・新学術領域研究「ソフトインターフェースの分子科学」 第3回ソフトインターフェースの分子科学ワークショップ「ソフト界面と計測・センシング」
    • Place of Presentation
      東京医科歯科大学 湯島キャンパス ( 東京都千代田区)
    • Year and Date
      2012-08-08
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Next-next generation DNA sequencing system for single molecules2012

    • Author(s)
      M. Taniguchi
    • Organizer
      阪大産研・imec 国際シンポジウム 2012 imec ・Handai International Symposium 2012
    • Place of Presentation
      大阪大学 産業科学研究所 (大阪府茨木市)
    • Year and Date
      2012-06-05
    • Related Report
      2013 Final Research Report
  • [Presentation] Single-molecule electrical sequencing using gating nanopores2012

    • Author(s)
      M. Taniguchi
    • Organizer
      2nd Next Generation Sequencing
    • Place of Presentation
      Hyatt Harborside (Boston, MA, USA)
    • Year and Date
      2012-05-30
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] 1分子ナノポアシークエンシング技術2012

    • Author(s)
      谷口正輝
    • Organizer
      第6回日本エピジェネティック研究会
    • Place of Presentation
      国立情報学術研究所 学術総合センター(東京都千代田)
    • Year and Date
      2012-05-15
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and RNA2012

    • Author(s)
      M. Taniguchi
    • Organizer
      International Symposium on Nanobiotechnology meets Holonic Commuication
    • Place of Presentation
      Nagoya University (Aichi)
    • Year and Date
      2012-03-23
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single Molecule Electrical Sequencing of DNA and RNA2012

    • Author(s)
      M.Taniguchi
    • Organizer
      International Symposium on Nanobiotechnology meets Holonic Commuication
    • Place of Presentation
      Nagoya University (Aichi)(招待講演)
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single-molecule electrical sequencing technology2012

    • Author(s)
      M. Taniguchi
    • Organizer
      The 15th SANKEN International Symposium 2012, The 10th SANKEN Nanotechnology Symposium
    • Place of Presentation
      Osaka University (Osaka)
    • Year and Date
      2012-01-12
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Single-Molecule Electrical Sequencing Technology2012

    • Author(s)
      M.Taniguchi
    • Organizer
      The 15th SANKEN International Symposium 2012, The 10th SANKEN Nanotechnology Symposium
    • Place of Presentation
      Osaka University (Osaka)(招待講演)
    • Year and Date
      2012-01-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゲーティングナノポアによる1分子 DNA シークエンシング2012

    • Author(s)
      谷口正輝
    • Organizer
      日本分析化学会第61年会 シンポジウム
    • Place of Presentation
      金沢大学 角間キャンパス (石川県金沢市)
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] ゲーティングナノポアによる1分子DNAシークエンシング2012

    • Author(s)
      谷口 正輝
    • Organizer
      日本分析化学会第61年会 シンポジウム
    • Place of Presentation
      金沢大学角間キャンパス(〒920-1192 金沢市角間町)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Third-generation DNA sequencing technology using single-molecule analysis2011

    • Author(s)
      M. Taniguchi
    • Organizer
      China-japan Joint Symposium on Current and Future Molecular Electronics
    • Place of Presentation
      Nanjing University (China)
    • Year and Date
      2011-10-25
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Third-Generation DNA Sequencing Technology Using Single-Molecule Analysis2011

    • Author(s)
      M.Taniguchi
    • Organizer
      China-japan Joint Symposium on Current and Future Molecular Electronics
    • Place of Presentation
      Nanjing University (China)(招待講演)
    • Year and Date
      2011-10-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of gating nanopores for next-next DNA sequencing using mechanically controllable break-junctions2011

    • Author(s)
      M. Taniguchi
    • Organizer
      American Society of Mechanical Engineers, The Japan Society of Mechanical Engineers, and Korean Society of Mechanical Engineers, Joint Fluid Engineering Conference 2011
    • Place of Presentation
      ACT City Congress Center (Hamamatsu)
    • Year and Date
      2011-07-25
    • Related Report
      2013 Final Research Report
    • Invited
  • [Presentation] Development of Gating Nanopores for Next-next DNA Sequencing Using Mechanically Controllable Break-junctions2011

    • Author(s)
      M.Taniguchi
    • Organizer
      American Society of Mechanical Engineers, The Japan Society of Mechanical Engineers, and Korean Society of Mechanical Engineers, Joint Fluid Engineering Conference 2011
    • Place of Presentation
      ACT City Congress Cneter (Hamamatsu)(招待講演)
    • Year and Date
      2011-07-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] Single Molecule Sequencing

    • Author(s)
      Masateru Taniguchi
    • Organizer
      Pioneer Workshop 2014 on nanopore and nanofluidics – Physics and application as Biodevices
    • Place of Presentation
      大阪大学産業科学研究所 楠本会館
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1分子接合の物性

    • Author(s)
      谷口 正輝
    • Organizer
      第11回京都大学福井謙一記念研究センターシンポジウム
    • Place of Presentation
      京都大学 福井謙一記念研究センター
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Single Molecule Electrical Sensing Technologies

    • Author(s)
      Masateru Taniguchi
    • Organizer
      The 17th SANKEN International Symposium --- Joined with The 2nd International Symposiumu of Nano-Micro Materials, Devices, and System Research Alliance Project
    • Place of Presentation
      大阪大学銀杏会館
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ゲーティングナノポアを用いたDNAシークエンサー

    • Author(s)
      谷口 正輝
    • Organizer
      2013年真空・表面科学合同講演会 第33回表面科学学術講演会 第54回真空に関する連合講演会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1分子科学の未来戦略

    • Author(s)
      谷口 正輝
    • Organizer
      大阪大学 産業科学研究所 第 69 回学術講演会
    • Place of Presentation
      大阪大学産業科学研究所 管理棟講堂
    • Related Report
      2013 Annual Research Report
  • [Presentation] Single Molecule Electrical Sequencing of DNA and microRNA

    • Author(s)
      谷口 正輝
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1分子ナノポアシークエンシング技術

    • Author(s)
      谷口 正輝
    • Organizer
      第6回日本エピジェネティック研究会
    • Place of Presentation
      国立情報学術研究所(学術総合センター)(東京都千代田区一ツ橋2-1-2)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Single-Molecule Electrical Sequencing Using Gating Nanopores

    • Author(s)
      Masateru Taniguchi
    • Organizer
      2nd Next Generation Sequencing
    • Place of Presentation
      Hyatt Harborside(101 Harborside Drive, Boston, MA 02128, USA)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Next-next Generation DNA Sequencing System for Single Molecules

    • Author(s)
      Masateru Taniguchi
    • Organizer
      阪大産研・imec 国際シンポジウム 2012 imec・Handai International Symposium 2012
    • Place of Presentation
      大阪大学 産業科学研究所講堂
    • Related Report
      2012 Annual Research Report
  • [Presentation] ナノポアデバイスの1分子科学

    • Author(s)
      谷口 正輝
    • Organizer
      文部科学省・科学研究費補助金・新学術領域研究「ソフトインターフェースの分子科学」 第3回ソフトインターフェースの分子科学ワークショップ「ソフト界面と計測・センシング」
    • Place of Presentation
      東京医科歯科大学 湯島キャンパス 歯学部特別講堂(東京都千代田区神田駿河台2-3-10)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子エピゲノム解析技術の開発

    • Author(s)
      谷口 正輝
    • Organizer
      大阪大学 蛋白質研究所セミナー エピゲノム解析の新技術とエピジェネティクス制御機構の新展開
    • Place of Presentation
      大阪大学 蛋白質研究所 講堂(吹田市山田丘)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子を解析するナノポアデバイス

    • Author(s)
      谷口 正輝
    • Organizer
      学術振興会174委員会 第40回研究会
    • Place of Presentation
      京都テルサ(京都市南区九条下殿田町70番地)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子科学と1分子デバイス

    • Author(s)
      谷口 正輝
    • Organizer
      第6回有機π電子系シンポジウム
    • Place of Presentation
      道後温泉 茶波瑠(ちゃはる)(愛媛県松山市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子シークエンサーの開発

    • Author(s)
      谷口 正輝
    • Organizer
      (独)産業技術総合研究所 ナノシステム研究部門 講演会
    • Place of Presentation
      (独)産業技術総合研究所 産総研つくば中央2-12(OSL棟) 203-6(2階第6会議室)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 1分子科学を用いるバイオナノデバイス

    • Author(s)
      谷口 正輝
    • Organizer
      東北大学通研/阪大産研 研究交流会
    • Place of Presentation
      大阪大学産業科学研究所 ナノテク棟 6階 輪講室
    • Related Report
      2012 Annual Research Report
  • [Presentation] Single Molecule Electrical Sequencing of DNA and RNA

    • Author(s)
      Masateru Taniguchi
    • Organizer
      APS March Meeting 2013
    • Place of Presentation
      Baltimore Convention Center (Baltimore, Maryland, USA)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks] ホームページ等

    • URL

      http://www.bionano.sanken.osaka-u.ac.jp

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-04-06   Modified: 2019-07-29  

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