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Structural basis of the autophagy-specific E1 enzyme Atg7

Research Project

Project/Area Number 23687012
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionMicrobial Chemistry Research Foundation

Principal Investigator

NODA Nobuo  公益財団法人微生物化学研究会, 微生物化学研究所, 主席研究員 (40396297)

Project Period (FY) 2011-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥22,230,000 (Direct Cost: ¥17,100,000、Indirect Cost: ¥5,130,000)
Fiscal Year 2013: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2012: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Fiscal Year 2011: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Keywordsオートファジー / Atg7 / E1酵素 / 構造生物学 / 結晶構造 / Atg3 / Atg12-Atg5 / E2酵素 / E3酵素 / Atg10 / Atg8
Research Abstract

The crystal structure of Atg7, the E1 enzyme specific to autophagy, has been determined alone and in complex with various Atg factors. Using the structural information, mutational analyses were performed, which revealed that Atg7 recognizes ubiquitin-like proteins and E2 enzymes using unique structures that were not observed in other E1 enzymes and that Atg7 catalyzes the conjugation reaction between ubiquitin-like proteins and E2 enzymes using a novel mechanism that has never been observed in other E1 enzymes. Since the reactions catalyzed by Atg7 are essential only to autophagy, the obtained knowledge will contribute to the development of novel compounds that specifically regulate autophagy.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (35 results)

All 2014 2013 2012 2011 Other

All Journal Article (11 results) (of which Peer Reviewed: 7 results) Presentation (15 results) (of which Invited: 4 results) Book (7 results) Remarks (2 results)

  • [Journal Article] Atg12-Atg5 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site2013

    • Author(s)
      Sakoh-Nakatogawa, M., Matoba, K., Asai, E., Kirisako, H., Ishii, J., Noda, N. N., Inagaki, F., Nakatogawa, H. and Ohsumi, Y
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: Vol.20 Issue: 4 Pages: 433-439

    • DOI

      10.1038/nsmb.2527

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the Atg12-Atg5 conjugate reveals a platform for stimulating Atg8-PE conjugation2013

    • Author(s)
      Noda, N. N., Fujioka, Y., Hanada, T., Ohsumi, Y. and Inagaki, F
    • Journal Title

      EMBO Reports

      Volume: Vol.14 Issue: 2 Pages: 206-211

    • DOI

      10.1038/embor.2012.208

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] オートファジーの構造生物学2013

    • Author(s)
      野田展生
    • Journal Title

      生化学

      Volume: Vol.85 Pages: 762-774

    • NAID

      10031202188

    • URL

      http://www.jbsoc.or.jp/seika/wp-content/uploads/2014/06/85-09-04.pdf

    • Related Report
      2013 Final Research Report
  • [Journal Article] オートファジーの構造生物学主要Atg因子の構造の最新像と未解決課題2013

    • Author(s)
      野田展生
    • Journal Title

      実験医学

      Volume: Vol.31 Pages: 1355-1361

    • Related Report
      2013 Final Research Report
  • [Journal Article] オートファジーの構造生物学 主要Atg因子の構造の最新像と未解決課題2013

    • Author(s)
      野田 展生
    • Journal Title

      実験医学

      Volume: 31 Pages: 1355-1361

    • Related Report
      2013 Annual Research Report
  • [Journal Article] オートファジーの構造生物学2013

    • Author(s)
      野田 展生
    • Journal Title

      生化学

      Volume: 85 Pages: 762-774

    • NAID

      10031202188

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.2012

    • Author(s)
      Yamaguchi M, Matoba K, Sawada R, Fujioka Y, Nakatogawa H, Yamamoto H, Kobashigawa Y, Hoshida H, Akada R, Ohsumi Y, Noda NN, Inagaki F.
    • Journal Title

      Nat. Struct. Mol. Biol.

      Volume: 19 Issue: 12 Pages: 1250-1256

    • DOI

      10.1038/nsmb.2451

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural insights into Atg10-mediated formation of the autophagy-essential Atg12-Atg5 conjugate2012

    • Author(s)
      Yamaguchi, M., Noda, N. N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y. and Inagaki, F
    • Journal Title

      Structure

      Volume: Vol.20 Issue: 7 Pages: 1244-1254

    • DOI

      10.1016/j.str.2012.04.018

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of Atg7 Alone and its Atg8-Bound Forms2012

    • Author(s)
      野田展生
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 54 Issue: 3 Pages: 166-171

    • DOI

      10.5940/jcrsj.54.166

    • NAID

      10030793233

    • ISSN
      0369-4585, 1884-5576
    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of Atg8 activation by a homodimeric E1, Atg72011

    • Author(s)
      Noda N.N., Satoo K., Fujioka Y., Kumeta H., Ogura K., Nakatogawa H., Ohsumi Y., Inagaki F.
    • Journal Title

      Molecular Cell

      Volume: 44 Issue: 3 Pages: 462-475

    • DOI

      10.1016/j.molcel.2011.08.035

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of Atg8 activation by a homodimeric E1, Atg72011

    • Author(s)
      Noda, N.N., Satoo, K., Fujioka, Y., Kumeta, H., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.
    • Journal Title

      Molecular Cell

      Volume: 44 Pages: 462-475

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 構造生物学と生化学から迫るオートファジーの分子機構2013

    • Author(s)
      野田展生
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大学甲府キャンパス(山梨県甲府市)
    • Year and Date
      2013-06-15
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural insights into ubiquitin-like modifications essential for autophagy2013

    • Author(s)
      Nobuo N. Noda
    • Organizer
      2013 KSBMB Annual Meeting
    • Place of Presentation
      COEX (Seoul, Korea)
    • Year and Date
      2013-05-15
    • Related Report
      2013 Final Research Report
  • [Presentation] オートファジーに必須なAtg結合系の構造基盤2012

    • Author(s)
      野田展生
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2012-12-14
    • Related Report
      2013 Final Research Report
  • [Presentation] オートファジーの構造生物学的研究2012

    • Author(s)
      野田展生
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2012-12-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Structure and function of the autophagy-essential E1, Atg72012

    • Author(s)
      Nobuo N. Noda
    • Organizer
      6th International Symposium on Autophagy : Molecular Mechanism, Cellular and Physiological Functions and Diseases
    • Place of Presentation
      Bankoku Shinryokan (Okinawa, Japan)
    • Year and Date
      2012-10-29
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural basis of Atg8 activation by Atg72011

    • Author(s)
      Nobuo N. Noda
    • Organizer
      2nd Japan-Sino Autophagy Symposium
    • Place of Presentation
      Shonan Village Center (Kanagawa, Japan)
    • Year and Date
      2011-10-07
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural basis of Atg8 activation and transfer to Atg3 by Atg72011

    • Author(s)
      Nobuo N. Noda
    • Organizer
      Cold Spring Harbor Laboratory Meeting On The Ubiquitin Family
    • Place of Presentation
      Cold Spring Harbor Laboratory (Cold Spring Harbor, USA)
    • Year and Date
      2011-05-19
    • Related Report
      2013 Final Research Report
  • [Presentation] Structural basis of Atg8 activation and transfer to Atg3 by Atg72011

    • Author(s)
      Nobuo N.Noda, Kenji Satoo, Yuko Fujioka, Hiroyuki Kumeta
    • Organizer
      Cold Spring Harbor Laboratory Meeting On The Ubiquitin Family
    • Place of Presentation
      Cold Spring Harbor Laboratory
    • Year and Date
      2011-05-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural basis of Atg8 activation by Atg72011

    • Author(s)
      Nobuo N.Noda
    • Organizer
      2nd Japan-Sino Autophagy Symposium
    • Place of Presentation
      Shonan village
    • Year and Date
      2011-05-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural insights into ubiquitin-like modifications essential for autophagy.

    • Author(s)
      Nobuo N. Noda
    • Organizer
      2013 KSBMB Annual Meeting
    • Place of Presentation
      COEX, Seoul, Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 構造生物学と生化学から迫るオートファジーの分子機構

    • Author(s)
      野田 展生
    • Organizer
      平成25年度日本生化学会関東支部例会
    • Place of Presentation
      山梨大学甲府キャンパス(甲府市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Structure and function of the autophagy-essential E1, Atg7.

    • Author(s)
      Noda, N. N., Ohsumi, Y., inagaki, F.
    • Organizer
      6th International Symposium on Autophagy: Molecular Mechanism, Cellular and Physiological Functions and Diseases
    • Place of Presentation
      Bankoku Shinryokan, Okinawa, Japan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] オートファジーに必須なAtg結合系の構造基盤

    • Author(s)
      野田展生,大隅良典,稲垣冬彦
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 植物Atg7-Atg3複合体構造:Atg8結合系におけるE1-E2酵素反応の洞察

    • Author(s)
      的場一晃,藤岡優子,中戸川万智子,中戸川仁,稲垣冬彦,大隅良典,野田展生
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 構造に基づいた解析により明らかとなったAtg18のAtg2及びイノシトールリン脂質との異なる結合領域

    • Author(s)
      渡邊康紀,小林孝史,山本林,星田尚司,赤田倫冶,稲垣冬彦,大隅良典,野田展生
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Annual Research Report
  • [Book] Cancer, Other Pathologies, Inflammation, Immunity, Infection, and Aging Volume 3–Mitophagy2014

    • Author(s)
      Noda, N. N.他
    • Publisher
      Elsevier,Autophagy
    • Related Report
      2013 Final Research Report
  • [Book] Cancer, Other Pathologies, Inflammation, Immunity, Infection, and Aging Volume 2–Role in General Diseases2013

    • Author(s)
      Noda, N. N.他
    • Publisher
      Elsevier,Autophagy
    • Related Report
      2013 Final Research Report
  • [Book] オートファジー生命をささえる細胞の自己分解システム2013

    • Author(s)
      野田展生他
    • Publisher
      化学同人
    • Related Report
      2013 Final Research Report
  • [Book] Biochemistry2011

    • Author(s)
      Noda, N. N.他
    • Publisher
      InTECH
    • Related Report
      2013 Final Research Report
  • [Book] Current Trends in X-Ray Crystallography2011

    • Author(s)
      Noda, N. N.他
    • Publisher
      InTECH
    • Related Report
      2013 Final Research Report
  • [Book] Current Trends in X-Ray Crystallography2011

    • Author(s)
      Noda, N.N., Ohsumi, Y., Inagaki, F.
    • Total Pages
      16
    • Publisher
      INTECH
    • Related Report
      2011 Annual Research Report
  • [Book] Biochemistry2011

    • Author(s)
      Watanabe, Y., Noda, N.N.
    • Total Pages
      16
    • Publisher
      INTECH
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.bikaken.or.jp/laboratories/molecule/summary.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 公益財団法人微生物化学研究会微生物化学研究所分子構造解析部

    • URL

      http://www.bikaken.or.jp/laboratories/molecule/summary.html

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2011-04-06   Modified: 2019-07-29  

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