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The effect of compartment size on the intracompartmental reaction.

Research Project

Project/Area Number 23700361
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Bioinformatics/Life informatics
Research InstitutionOsaka University

Principal Investigator

MATSUURA Tomoaki  大阪大学, 大学院・工学研究科, 准教授 (50362653)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Keywords無細胞翻訳系 / 人工細胞 / エマルション / ガラクトシダーゼ / グルクロニダーゼ / 蛍光検出 / 速度論 / PURE system / 細胞サイズ / 区画化 / 細胞内反応 / 微小反応場
Research Abstract

The cell contents are encapsulated within a compartment, the volume of which is a fundamental physical parameter that may affect intracompartmental reactions. However, there have been few studies to elucidate whether and how volume changes alone ca n affect the reaction kinetics. Here, we prepared artificial cell-like compartments with different volumes, and encapsulated the in vitro protein synthesis system. The effect of the compartment size on the protein synthesis reaction was investigated. We found a reaction that proceeds faster in smaller compartments and revealed the mechanism of the acceleration. This result provided an example of how small compartment can be beneficial for the intracompartmental reactions.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (14 results)

All 2012 2011

All Journal Article (8 results) (of which Peer Reviewed: 5 results) Presentation (4 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Cell-free protein synthesis from a single copy of DNA in a glass microchamber.2012

    • Author(s)
      Okano T, Matsuura T, Kazuta Y, Suzuki H, Yomo T.
    • Journal Title

      Lab Chip

      Volume: 12(15) Pages: 2704-2711

    • Related Report
      2012 Final Research Report
  • [Journal Article] Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.2012

    • Author(s)
      Matsuura T, Hosoda K, Kazuta Y, Ichihashi N, Suzuki H, Yomo T.
    • Journal Title

      ACS Synth Biol

      Volume: 1(9) Pages: 431-437

    • Related Report
      2012 Final Research Report
  • [Journal Article] Effects of compartment size on the kinetics of intracompartmental multimeric orotein synthesis2012

    • Author(s)
      Matsuura, T., Hosoda, K., Kazuta, Y., Ichihashi, N., Suzuki, H., Yomo, T
    • Journal Title

      ACS Synthetic Biology

      Volume: 1 Issue: 9 Pages: 431-437

    • DOI

      10.1021/sb300041z

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell-free protein synthesis from a single copy of DNA in a glass microchamber2012

    • Author(s)
      Taiji Okano , Tomoaki Matsuura , Yasuaki Kazuta , Hiroaki Suzuki and Tetsuya Yomo
    • Journal Title

      Lab Chip

      Volume: 印刷中 Issue: 15 Pages: 2704-2711

    • DOI

      10.1039/c2lc40098g

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules2012

    • Author(s)
      Terasawa, H. Nishimura, K. Suzuki, H. Matsuura, T. Yomo, T.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 109(16) Issue: 16 Pages: 5942-7

    • DOI

      10.1073/pnas.1120327109

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Construction of Gene Screening System Using Giant Unilamellar Liposomes and Fluorescence Activated Cell Sorter2012

    • Author(s)
      T. Nishikawa、T. Sunami, T. Matsuura, N. Ichihashi, T. Yomo
    • Journal Title

      Analytical Chemistry

      Volume: 84 Issue: 11 Pages: 5017-5024

    • DOI

      10.1021/ac300678w

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kinetic analysis of beta-galactosidase and beta-glucuronidase tetramerization coupled with protein translation.2011

    • Author(s)
      Matsuura T, Hosoda K, Ichihashi N, Kazuta Y, Yomo T.
    • Journal Title

      J Biol Chem

      Volume: 286(25) Pages: 22028-22034

    • Related Report
      2012 Final Research Report
  • [Journal Article] Kinetic analysis of beta-galactosidase and beta-glucuronidase tetramerization coupled with protein translation2011

    • Author(s)
      Matsuura, T. Hosoda, K. Ichihashi, N. Kazuta, Y. Yomo, T.
    • Journal Title

      J Biol Chem

      Volume: 286(25) Issue: 25 Pages: 22028-34

    • DOI

      10.1074/jbc.m111.240168

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 細胞サイズの微小反応場における無細胞蛋白質合成技術の確立2012

    • Author(s)
      松浦友亮
    • Organizer
      第7回「バイオものづくり」シンポジウム
    • Place of Presentation
      理化学研究所(和光)
    • Year and Date
      2012-03-08
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜蛋白質を対象としたin vitro進化分子工学的手法の開発2012

    • Author(s)
      松浦友亮
    • Organizer
      第6回 バイオ関連化学シンポジウム
    • Place of Presentation
      北海道大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞サイズの微小反応場における無細胞蛋白質合成技術の確立2012

    • Author(s)
      松浦友亮
    • Organizer
      第7回理研「バイオものづくり」シンポジウム(招待講演)
    • Place of Presentation
      理化学研究所
    • Related Report
      2011 Research-status Report
  • [Presentation] Analysis of the properties of biochemical reactions in a cell-size compartment2011

    • Author(s)
      Tomoaki Matsuura
    • Organizer
      International Symposium on Synthesizing life and biological systems(招待講演)
    • Place of Presentation
      千里ライフサイエンスビル
    • Related Report
      2011 Research-status Report
  • [Patent(Industrial Property Rights)] インビトロ膜タンパク質進化分子工学的手法2012

    • Inventor(s)
      四方哲也、松浦 友亮、曽我遥、渡 邉肇、藤井聡志
    • Industrial Property Rights Holder
      四方哲也、松浦 友亮、曽我遥、渡 邉肇、藤井聡志
    • Industrial Property Number
      2012-145795
    • Filing Date
      2012-06-25
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] インビトロ膜タンパク質進化分子工学的手法2012

    • Inventor(s)
      四方哲也、松浦友亮、曽我遥、渡邉肇、藤井聡志
    • Industrial Property Rights Holder
      四方哲也、松浦友亮、曽我遥、渡邉肇、藤井聡志
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2012-145795
    • Filing Date
      2012-06-25
    • Related Report
      2012 Annual Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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