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Phosphoproteomic analysis of clinical colon cancer specimen and validation by SRM/MRM analysis.

Research Project

Project/Area Number 23701093
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Tumor diagnosis
Research Institution独立行政法人医薬基盤研究所

Principal Investigator

SHIROMIZU Takashi  独立行政法人医薬基盤研究所, 創薬基盤研究部, 研究員 (00582678)

Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2012: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2011: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords大腸癌 / プロテオミクス / バイオマーカー
Research Abstract

We performed mass spectrometry-based quantitative phosphoproteomic analysis to search for biomarker candidates by using surgically extracted colorectal cancer tissues. Novel biomarker candidates were identified by optimization of analysis conditions. For the selection of candidate genes, pathway analysis and comparison with the results of metastatic cancer cell lines were performed. Also by in vitro invasion assay, we have identified a novel functional molecule involved in cancer invasion.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (12 results)

All 2013 2012 2011

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (11 results)

  • [Journal Article] Identification of Missing Proteins in the neXtProt Database and Unregistered Phosphopeptides in the PhosphoSitePlus Database As Part of the Chromosome-Centric Human Proteome Project.2013

    • Author(s)
      Takashi Shiromizu
    • Journal Title

      Journal of Proteome Research

      Volume: 印刷中 Issue: 6 Pages: 2414-2421

    • DOI

      10.1021/pr300825v

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Presentation] Proteomic analysis of highly metastatic colorectal cancer cells established from orthotopic metastatic mouse model2012

    • Author(s)
      白水 崇
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      北海道
    • Year and Date
      2012-09-19
    • Related Report
      2012 Final Research Report
  • [Presentation] Quantitative proteomic profiling of orthotopic xenograft mouse model of colorectal cancer metastasis2012

    • Author(s)
      Takashi Shiromizu
    • Organizer
      HUPO2012 11th World Congress
    • Place of Presentation
      Boston, MA in the United States
    • Year and Date
      2012-09-09
    • Related Report
      2012 Final Research Report
  • [Presentation] 同所性移植モデルによる大腸癌転移性株の定量的プロテオーム解析2012

    • Author(s)
      白水 崇
    • Organizer
      日本プロテオーム学会2012年大会
    • Place of Presentation
      東京
    • Year and Date
      2012-07-26
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] Proteomic analysis of highly metastatic colorectal cancer cells established from orthotopic metastatic mouse model.2012

    • Author(s)
      Takashi Shiromizu
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      北海道
    • Related Report
      2012 Annual Research Report
  • [Presentation] Quantitative proteomic profiling of orthotopic xenograft mouse model of colorectal cancer metastasis.2012

    • Author(s)
      Takashi Shiromizu
    • Organizer
      HUPO2012 11th World Congress
    • Place of Presentation
      Boston, MA in the United States
    • Related Report
      2012 Annual Research Report
  • [Presentation] Phosphoproteomic analysis of human colorectal cancer tissues for exploring a novel cancer metastatic Biomarker2011

    • Author(s)
      白水 崇
    • Organizer
      第70回日本癌学会学術総会
    • Place of Presentation
      名古屋
    • Year and Date
      2011-10-03
    • Related Report
      2012 Final Research Report
  • [Presentation] Phosphoproteomic analysis of clinical colon cancer specimen; Exploring a novel factor of cancer metastasis2011

    • Author(s)
      Takashi Shiromizu
    • Organizer
      HUPO
    • Place of Presentation
      スイス、ジュネーブ
    • Year and Date
      2011-09-05
    • Related Report
      2012 Final Research Report 2011 Research-status Report
  • [Presentation] Phosphoproteomic analysis of clinical colon cancer specimen for exploring a novel factor involved in cancer metastasis2011

    • Author(s)
      白水 崇
    • Organizer
      第9回日本プロテオーム学会
    • Place of Presentation
      新潟
    • Year and Date
      2011-07-28
    • Related Report
      2012 Final Research Report 2011 Research-status Report
  • [Presentation] 大規模リン酸化プロテオーム解析による癌転移に関わる新規リン酸化シグナルの探索2011

    • Author(s)
      白水 崇
    • Organizer
      第63回日本細胞生物学会大会
    • Place of Presentation
      北海道
    • Year and Date
      2011-06-27
    • Related Report
      2012 Final Research Report
  • [Presentation] Phosphoproteomic analysis of human colorectal cancer tissues for exploring a novel cancer metastatic biomarker2011

    • Author(s)
      T. Shiromizu, R. Narumi, T. Kuga, J. Adachi, H. Matsubara, M. Matsumoto, K. Nakayama, T. Tomonaga
    • Organizer
      第70回 日本癌学会学術総会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Research-status Report
  • [Presentation] 大規模リン酸化プロテオーム解析による癌転移に関わる新規リン酸化シグナルの探索2011

    • Author(s)
      白水崇,鳴海良平,久家貴寿,足立淳,松原久裕,松本雅紀,中山敬一,朝長毅
    • Organizer
      第63回日本細胞生物学会大会
    • Place of Presentation
      北海道
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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