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Metaproteomics of viral lysates in a marine Synechococcus

Research Project

Project/Area Number 23710011
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Environmental dynamic analysis
Research InstitutionJapan Agency for Marine-Earth Science and Technology

Principal Investigator

YOSHIDA Mitsuhiro  独立行政法人海洋研究開発機構, 海洋・極限環境生物圏領域, ポストドクトラル研究員 (60565555)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2012: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2011: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords物質循環 / 溶存有機物 / プロテオミクス / 微生物ループ / 海洋 / シアノバクテリア / ファージ
Research Abstract

In this study, the comprehensive metaproteomic analysis using the liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was performed to investigate the dissolved (< 0.2 um) proteomic composition of viral lysates occurring during infection of a marine cyanobacterial Synechococcus sp. The analysis of the lysate proteome revealed that photosynthetic proteins, metabolic enzymes involved in amino acids and carbohydrates, and viral capsids were major components, possibly indicating the formation of dissolved proteins during viral infection was influenced by differences in the nature and subcellular localization of protein molecules.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (17 results)

All 2014 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 1 results) Presentation (7 results) Remarks (4 results)

  • [Journal Article] Metaproteomic characterization of dissolved organic matter in coastal seawater2014

    • Author(s)
      Yoshida M, Yamamoto K, Suzuki S
    • Journal Title

      J. Oceanogr.

      Volume: 70(1) Issue: 1 Pages: 105-113

    • DOI

      10.1007/s10872-013-0212-6

    • NAID

      40019971217

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Heavy oil exposure increases viral production in natural marine bacterial populations.2014

    • Author(s)
      Yoshida, M. and Suzuki, S.
    • Journal Title

      Journal of Oceanography

      Volume: 70 Issue: 1 Pages: 115-122

    • DOI

      10.1007/s10872-013-0216-2

    • NAID

      40019971237

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metagenomic analysis of viral communities in (hado)pelagic sediments2013

    • Author(s)
      Yoshida M, Takaki Y, Eitoku M, Nunoura T, Takai K
    • Journal Title

      PLoS ONE

      Volume: 8(2) Issue: 2 Pages: e57271-e57271

    • DOI

      10.1371/journal.pone.0057271

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cyanophage Infection in the Bloom-Forming Cyanobacteria <i>Microcystis aeruginosa</i> in Surface Freshwater2012

    • Author(s)
      Yoshida-Takashima, Y., Yoshida, M., Ogata, H., Nagasaki, K., Hiroishi, S. and Yoshida, T.
    • Journal Title

      Microbes and Environments

      Volume: 27 Issue: 4 Pages: 350-355

    • DOI

      10.1264/jsme2.ME12037

    • NAID

      10031125931

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Effect of sucrose and halophilic lactic acid bacterium Tetragenococcus halophilus on chemical characteristics and microbial proliferation during fish sauce fermentation2012

    • Author(s)
      Shozen K-I, Satomi M, Yano Y, Yoshida M, Fukui Y, Takano T, Funatsu Y
    • Journal Title

      J. Food Safety

      Volume: 32(4) Issue: 4 Pages: 389-398

    • DOI

      10.1111/j.1745-4565.2012.00392.x

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Bacterial communities in fish sauce mash using culture-dependent and -independent methods2012

    • Author(s)
      Fukui Y, Yoshida M, Shozen K-I, Funatsu Y, Takano T, Oikawa H, Yano Y, Satomi M
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 58 Issue: 4 Pages: 273-281

    • DOI

      10.2323/jgam.58.273

    • NAID

      130004802222

    • ISSN
      0022-1260, 1349-8037
    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 海洋シアノファージによる溶菌に由来する溶存態有機物のプロテオーム解析2013

    • Author(s)
      吉田光宏, 島村繁, 布浦拓郎, 高井研
    • Organizer
      第29回日本微生物生態学会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2013-11-23
    • Related Report
      2013 Final Research Report
  • [Presentation] 海洋シアノファージによる溶菌に由来する溶存態有機物のプロテオーム解析2013

    • Author(s)
      吉田光宏*, 島村繁, 布浦拓郎, 高井研
    • Organizer
      第29回日本微生物生態学会
    • Place of Presentation
      鹿児島大学, 鹿児島県
    • Related Report
      2013 Annual Research Report
  • [Presentation] Metagenomic analyses of the viral communities in (hado)pelagic sediments2012

    • Author(s)
      吉田光宏 , 高木善弘 , 布浦拓郎 , 高井研
    • Organizer
      第28回日本微生物生態学会
    • Place of Presentation
      豊橋科学技術大学
    • Related Report
      2013 Final Research Report
  • [Presentation] Metagenomic analyses of the viral communities in (hado)pelagic sediments ((超)深海における表層堆積物中の未知ウイルス群集構造の解明)2012

    • Author(s)
      吉田光宏*, 高木善弘, 布浦拓郎, 高井研
    • Organizer
      第28回日本微生物生態学会
    • Place of Presentation
      豊橋科学技術大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Metagenomic analyses of viral communities in (hado-)pelagic sediments2011

    • Author(s)
      Yoshida M, Nunoura T, Takaki Y, Takai K
    • Organizer
      第6回国際水圏ウイルスワークショップ
    • Place of Presentation
      オランダ・テセル島
    • Year and Date
      2011-11-01
    • Related Report
      2013 Final Research Report
  • [Presentation] 深海堆積物表層環境におけるウイルスメタゲノムの解析2011

    • Author(s)
      吉田光宏 , 布浦拓郎 , 高木善弘 , 高井研
    • Organizer
      第27回日本微生物生態学会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-10-08
    • Related Report
      2013 Final Research Report 2011 Research-status Report
  • [Presentation] Metagenomic analyses of viral communities in (hado-)pelagic sediments2011

    • Author(s)
      Mitsuhiro Yoshida, Takuro Nunoura, Yoshihiro Takaki, and Ken Takai
    • Organizer
      第6回国際水圏ウイルスワークショップ
    • Place of Presentation
      オランダ海洋研究所(テセル)
    • Related Report
      2011 Research-status Report
  • [Remarks] アウトリーチ活動 : 海洋研究開発機構横須賀本部での科研費採択研究に関する一般公開 (2011/10/1)

    • Related Report
      2013 Final Research Report
  • [Remarks] JAMSTEC機関リポジトリのホームページ(JAMSTEC機関リポジトリ : 海洋研究開発機構で生み出された学術雑誌論文、紀要論文、会議発表用資料、図書等の知的生産物を電子的な形態で保存し、公開するシステム . [OAI-PMH準拠])

    • URL

      http://www.jamstec.go.jp/jir/infolib/meta_pub/G0000002REP

    • Related Report
      2013 Final Research Report
  • [Remarks] JAMSTEC機関リポジトリ

    • URL

      http://www.jamstec.go.jp/jir/infolib/meta_pub/G0000002REP

    • Related Report
      2013 Annual Research Report
  • [Remarks] JAMSTEC機関リポジトリ

    • URL

      http://www.jamstec.go.jp/jir/infolib/meta_pub/G0000002REP

    • Related Report
      2012 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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