Alleviating bottlenecks in interpretation of omics datasets
Project/Area Number |
23710231
|
Research Category |
Grant-in-Aid for Young Scientists (B)
|
Allocation Type | Multi-year Fund |
Research Field |
System genome science
|
Research Institution | The University of Tokyo |
Principal Investigator |
IWASAKI Wataru 東京大学, 大学院理学系研究科, 准教授 (50545019)
|
Project Period (FY) |
2011-04-28 – 2015-03-31
|
Project Status |
Completed (Fiscal Year 2014)
|
Budget Amount *help |
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2014: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
|
Keywords | バイオインフォマティクス / オーミクス / データ解釈 / データベース / ゲノム / ネットワーク / データ可視化 / テキストマイニング |
Outline of Final Research Achievements |
As omics data are accumulating at an ever-increasing pace, life science is facing with a fundamental bottleneck in generating hypothesis by referring to existing knowledge in databases and literature. In this study, we created a system that represents knowledge in databases and literature in network structures. The system will help researchers interpret massive omics datasets.
|
Report
(5 results)
Research Products
(87 results)
-
-
-
[Journal Article] Tepidicaulis marinus gen. nov., sp. nov., a novel marine bacterium reducing nitrate to nitrous oxide strictly under microaerobic conditions.2015
Author(s)
Mio Takeuchi, Takao Yamagishi, Yoichi Kamagata, Kenshiro Oshima, Masahira Hattori, Taiki Katayama, Satoshi Hanada, Hideyuki Tamaki, Katsumi Marumo, Hiroto Maeda, Munetomo Nedachi, Wataru Iwasaki, Yuichi Suwa, and Susumu Sakata.
-
Journal Title
International Journal of Systematic and Evolutionary Microbiology, published online (2015)
Volume: in press
Issue: Pt_6
Pages: 1749-1754
DOI
Related Report
Peer Reviewed
-
-
-
-
[Journal Article] CLOCK-controlled polyphonic regulations of circadian rhythms through canonical and non-canonical E-boxes.2014
Author(s)
Hikari Yoshitane, Haruka Ozaki, Hideki Terajima, Ngoc-Hien Du, Yutaka Suzuki, Taihei Fujimori, Naoki Kosaka, Shigeki Shimba, Sumio Sugano, Toshihisa Takagi, Wataru Iwasaki, and Yoshitaka Fukada.
-
Journal Title
Molecular and Cellular Biology
Volume: 34
Issue: 10
Pages: 1776-1787
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
-
-
[Journal Article] Crossing Borders for Science.2014
Author(s)
Sebastian J. Schultheiss, Joshua SungWoo Yang, Wataru Iwasaki, Shu-Hsi Lin, Angela Jean, and Magali Michaut
-
Journal Title
PLOS Computational Biology
Volume: 10
Issue: 3
Pages: e1003519-e1003519
DOI
Related Report
Peer Reviewed / Open Access
-
-
[Journal Article] Methylocaldum marinum sp. nov., a novel thermotolerant methane oxidizing bacterium isolated from marine sediments.2014
Author(s)
Mio Takeuchi, Yoichi Kamagata, Kenshiro Oshima, Satoshi Hanada, Hideyuki Tamaki, Katsumi Marumo, Hiroto Maeda, Munetomo Nedachi, Masahira Hattori, Wataru Iwasaki, and Susumu Sakata.
-
Journal Title
International Journal of Systematic and Evolutionary Microbiology
Volume: 64
Issue: Pt_9
Pages: 3240-3246
DOI
Related Report
Peer Reviewed
-
-
-
-
[Journal Article] Evolutionary origin of the Scombridae (tunas and mackerels) : members of a Paleogene adaptive radiation with 14 other pelagic fish families2013
Author(s)
Miya, M., Friedman, M., Satoh, T.P., Takeshima, H., Sado, T., Iwasaki, W., Yamanoue, Y., Nakatani, M., Mabuchi, K., Inoue, J.G., Poulsen, J.Y., Fukunaga, T., Sato, Y. and Nishida, M
-
Journal Title
PLOS ONE
Volume: 8
Issue: 9
Pages: e73535-e73535
DOI
Related Report
Peer Reviewed
-
[Journal Article] MitoFish and MitoAnnotator : a mitochondrial genome database of fish with an accurate and automatic annotation pipeline2013
Author(s)
Iwasaki, W., Fukunaga T., Isagozawa R., Yamada K., Maeda Y., Satoh T.P., Sado T., Mabuchi K., Takeshima H., Miya, M. and Nishida M
-
Journal Title
Molecular Biology and Evolution
Volume: 30
Issue: 11
Pages: 2531-2540
DOI
Related Report
Peer Reviewed
-
-
-
-
-
-
-
-
[Presentation] 定量生物学と情報生物学2015
Author(s)
岩崎渉
Organizer
定量生物学の会第七回年会
Place of Presentation
九州大学筑紫キャンパス(福岡県春日市)
Year and Date
2015-01-11
Related Report
Invited
-
-
[Presentation] CLOCKによる古典的・非古典的E-boxを介した概日時計の“多声的”制御2014
Author(s)
Hikari Yoshitane, Haruka Ozaki, Hideki Terajima, Ngoc-Hien Du, Yutaka Suzuki, Taihei Fujimori, Naoki Kosaka, Shigeki Shimba, Sumio Sugano, Toshihisa Takagi, Wataru Iwasaki, and Yoshitaka Fukada.
Organizer
日本バイオインフォマティクス学会2014年年会/第3回生命医薬情報学連合大会
Place of Presentation
仙台国際センター(宮城県仙台市)
Year and Date
2014-10-03
Related Report
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[Presentation] MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline2013
Author(s)
Wataru Iwasaki, Tsukasa Fukunaga, Ryota Isagozawa, Koichiro Yamada, Yasunobu Maeda, Takashi P. Satoh, Tetsuya Sado, Kohji Mabuchi, Hirohiko Takeshima, Masaki Miya, and Mutsumi Nishida
Organizer
日本バイオインフォマティクス学会2013年年会/第2回生命医薬情報学連合大会
Place of Presentation
タワーホール船堀,東京
Related Report
-
[Presentation] Novel marine moderately thermophilic microbes isolated from microbial consortium depends on methane2013
Author(s)
Mio Takeuchi, Katsumi Marumo, Hiroto Maeda, Munetomo Nedachi, Kenshiro Oshima, Taiki Katayama, Takao Yamagishi, Wataru Iwasaki, Yoichi Kamagata, Satoshi Hanada, Hideyuki Tamaki, Masahira Hattori, Yuichi Suwa, and Susumu Sakata
Organizer
The 5th Taiwan-Korea-Japan International Symposium on Microbial Ecology
Place of Presentation
National Central University, Jhongli, Taiwan
Related Report
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[Presentation] 系統推定結果の表現と認識
Author(s)
岩崎渉
Organizer
第176回農林交流センターワークショップ
Place of Presentation
農林水産省農林水産技術会議事務局筑波事務所,茨城
Related Report
Invited
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-