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Finding the coenzyme A binding sites and mechanism of enantioselectivity of firefly luciferase catalyzed thioesterification reaction

Research Project

Project/Area Number 23750197
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Chemistry related to living body
Research InstitutionUniversity of Hyogo

Principal Investigator

KATO Dai-ichiro  兵庫県立大学, 工学(系)研究科(研究院), 助教 (60423901)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2013: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsホタルルシフェラーゼ / チオエステル化 / 立体選択性 / 補酵素A / 結合部位
Research Abstract

Firefly luciferase, which is very famous enzyme for bioluminescence reaction, can also catalyze the enantioselective thioesterification reaction toward 2-arylpropanoic acid. The detail catalytic mechanisms for enantioselectivity and/or a binding site of coenzyme A, however, were not disclosed. Thus in this project, we tried to find the binding site for coenzyme A and tried to explain the mechanism of enantioselectivity toward 2-arylpropanoic acid. Finally we achieved to find some important residues for identifying of substrate chirality.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (50 results)

All 2014 2013 2012 2011 Other

All Journal Article (14 results) (of which Peer Reviewed: 13 results) Presentation (32 results) Remarks (4 results)

  • [Journal Article] Confirmation of color determination factors for Ser286 derivatives of firefly luciferase from Luciola cruciata (LUC-G)2013

    • Author(s)
      D.Kato, T.Kubo, M.Maenaka, K.Niwa, Y.Ohmiya, M.Takeoa, S.Negoro
    • Journal Title

      J. Mol. Catal. B : Enzymatic

      Volume: 87 Pages: 18-23

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interconversion of ketoprofen recognition in firefly luciferase-catalyzed enantioselective thioesterification reaction using from Pylocoeria miyako (PmL) and Hotaria parvura (HpL) just by mutating two amino acid residues2013

    • Author(s)
      D.Kato, Y.Hiraishi, M.Maenaka, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Journal Title

      J. Biotechnol

      Volume: 168 Pages: 277-283

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Route from Darkness to Light : Emergence and Evolution of Luciferase Activity in AMP-CoA-Ligases Inferred from a Mealworm Luciferase-like Enzyme2013

    • Author(s)
      V.R.Viviani, R.A.Prado, D.R.Neves, D.Kato, J.A.Barbosa
    • Journal Title

      Biochemistry

      Volume: 52(23) Pages: 3963-3973

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interconversion of ketoprofen recognition in firefly luciferase-catalyzed enantioselective thioesterification reaction using from Pylocoeria miyako (PmL) and Hotaria parvura (HpL) just by mutating two amino acid residues2013

    • Author(s)
      Dai-ishiro Kato, Kazuki Niwa, et al.
    • Journal Title

      JOURNAL OF BIOTECHNOLOGY

      Volume: 168-3 Issue: 3 Pages: 277-283

    • DOI

      10.1016/j.jbiotec.2013.04.024

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Route from Darkness to Light: Emergence and Evolution of Luciferase Activity in AMP-CoA-Ligases Inferred from a Mealworm Luciferase-like Enzyme2013

    • Author(s)
      V.R.Viviani, R.A.Prado, D.R.Neves, D.Kato,J.A.Barbosa
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 23 Pages: 3963-3973

    • DOI

      10.1021/bi400141u

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Confirmation of color determination factors for Ser286 derivatives of firefly luciferase from Luciola cruciata (LUC-G)2013

    • Author(s)
      D. Kato, T. Kubo, M. Maenaka, K. Niwa, et al.
    • Journal Title

      Journal of Molecular Catalysis B:Enzymatic

      Volume: 87 Pages: 18-23

    • DOI

      10.1016/j.molcatb.2012.10.009

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Enantioselective thioesterification activity in bioluminescent enzyme, firefly luciferase2012

    • Author(s)
      D.Kato, Y.Hiraishi, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Journal Title

      Luminescence

      Volume: 27 Pages: 124-125

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Color tuning of bioluminescence reaction by modifying the hydrogen bond network around the active site in firefly luciferase2012

    • Author(s)
      M.Maenaka, D.Kato, T.Kubo, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Journal Title

      Luminescence

      Volume: 27 Pages: 137-138

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Quantum yield and kinetics of the bioluminescence reaction using various beetle luciferases2012

    • Author(s)
      K.Niwa, Y.Ichino, M.Maenaka, T.Kubo, Y.Hiraishi, D.Kato, Y.Ohmiya
    • Journal Title

      Luminescence

      Volume: 27 Pages: 147-148

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] 物質生産手段としてのホタルルシフェラーゼの利用法2012

    • Author(s)
      加藤太一郎
    • Journal Title

      化学と工業

      Volume: 65 Pages: 225-226

    • NAID

      10030225068

    • Related Report
      2011 Research-status Report
  • [Journal Article] Enantiodifferentiation of Ketoprofen by Japanese Firefly Luciferase from Luciola lateralis2011

    • Author(s)
      D.Kato, T.Tatsumi, A.Bansho, K.Teruya, H.Yoshida, M.Takeo, S.Negoro
    • Journal Title

      J. Mol. Catal. B : Enzymatic

      Volume: 69 Pages: 140-146

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enzyme Encapsulation in Freeze-dried Bionanocomposites Prepared from Chitosan and Xanthan Gum Blend2011

    • Author(s)
      H.Liu, K.Nakagawa, D.Kato, D.Chaudhary, M.O.Tadé
    • Journal Title

      Mater. Chem. Phys.

      Volume: 129 Pages: 488-494

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Comparison of Acyl-CoA Synthetic Activities and Enantioselectivity toward 2-Arylpropanoic Acids in Firefly Luciferases2011

    • Author(s)
      D.Kato, K.Yokoyama, Y.Hiraishi, M.Takeo, S.Negoro
    • Journal Title

      Biosci. Biotech. Biochem.

      Volume: 75 Pages: 1758-1762

    • NAID

      10029757305

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Enantiodifferentiation of Ketoprofen by Japanese Firefly Luciferase from Luciola lateralis2011

    • Author(s)
      D.Kato, T.Tatsumi, A.Bansho, K.Teruya, H.Yoshida, M.Takeo, S.Negoro
    • Journal Title

      J. Mol. Catal. B: Enzymatic

      Volume: 69 Issue: 3-4 Pages: 140-146

    • DOI

      10.1016/j.molcatb.2011.01.008

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] ホタルの生合成経路を模倣したL-ルシフェリン発光システムの構築2014

    • Author(s)
      加藤太一郎,白川大暉,奥田真利,丹羽一樹,町田幸大,今高寛晃,武尾正弘,根来誠司
    • Organizer
      生物発光化学発光研究会第30回学術講演会要旨集
    • Place of Presentation
      東京工業大学蔵前会館 (P17, ポスター発表)
    • Year and Date
      2014-11-02
    • Related Report
      2013 Final Research Report
  • [Presentation] デラセミ化プロセスを利用したキラルフリーなホタルルシフェラーゼ発光反応システムの構築2014

    • Author(s)
      加藤太一郎,白川大暉,奥田真利,丹羽一樹,町田幸大,今高寛晃,武尾正弘,根来誠司
    • Organizer
      第65回日本生物工学会大会講演要旨集
    • Place of Presentation
      広島国際会議場 (1P-075, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] ルシフェリンアナログとホタルルシフェラーゼの相互作用と発光色の関係2014

    • Author(s)
      加藤太一郎,前中美華,白川大暉,丹羽一樹,近江谷克裕,武尾正弘,根来誠司
    • Organizer
      第65回日本生物工学会大会講演要旨集
    • Place of Presentation
      広島国際会議場 (2P-064, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Active site environment effects on the catalytic activities of firefly luciferase2013

    • Author(s)
      D.Kato, M.Maenaka, T.Kubo, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      Biotrans2013
    • Place of Presentation
      Exchange Conference central at Manchester Central, Manchester, UK (129, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Firefly Luciferases Bioluminescence Activity Profile Based on Quantum Yield and Kinetics2013

    • Author(s)
      K.Niwa, Y.Ichino, D.Kato, Y.Nakajima, Y.Ohmiya
    • Organizer
      Biotrans2013
    • Place of Presentation
      Exchange Conference central at Manchester Central, Manchester, UK (208, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Active site environment effects on the catalytic activities of firefly luciferase2013

    • Author(s)
      D.Kato, M.Maenaka, T.Kubo, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      Biotrans2013
    • Place of Presentation
      Exchange Conference central at Manchester Central, Manchester, UK
    • Related Report
      2013 Annual Research Report
  • [Presentation] Firefly Luciferases Bioluminescence Activity Profile Based on Quantum Yield and Kinetics2013

    • Author(s)
      K.Niwa, Y.Ichino, D.Kato, Y.Nakajima, Y.Ohmiya
    • Organizer
      Biotrans2013
    • Place of Presentation
      Exchange Conference central at Manchester Central, Manchester, UK
    • Related Report
      2013 Annual Research Report
  • [Presentation] ルシフェリンアナログとホタルルシフェラーゼの相互作用と発光色の関係2013

    • Author(s)
      加藤太一郎, 前中美華, 白川大暉, 丹羽一樹, 近江谷克裕,武尾正弘, 根来誠司
    • Organizer
      第65回日本生物工学会大会
    • Place of Presentation
      広島国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation] デラセミ化プロセスを利用したキラルフリーなホタルルシフェラーゼ発光反応システムの構築2013

    • Author(s)
      加藤太一郎, 白川大暉, 奥田真利, 丹羽一樹, 町田幸大,今高寛晃, 武尾正弘, 根来誠司
    • Organizer
      第65回日本生物工学会大会
    • Place of Presentation
      広島国際会議場
    • Related Report
      2013 Annual Research Report
  • [Presentation] Enantioselective thioesterification activity in bioluminescent enzyme, firefly luciferase2012

    • Author(s)
      D.Kato, Y.Hiraishi, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada (P18, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Color tuning of bioluminescence reaction by modifying the hydrogen bond network around the active site in firefly luciferase2012

    • Author(s)
      M.Maenaka, D.Kato, T.Kubo, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada (P20, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Quantum yield and kinetics of the bioluminescence reaction using various beetle luciferases2012

    • Author(s)
      K.Niwa, Y.Ichino, M.Maenaka, T.Kubo, Y.Hiraishi, D.Kato, Y.Ohmiya
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada (session Bioluminescence - fundamental(III), 口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Finding the enantioselective thioesterification activity in firefly luciferase2012

    • Author(s)
      D.Kato, Y.Hiraishi, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      7th CeBiTec Symposium "Bio-integrated Organic Synthesis in Industry : Biocatalytic Breakthroughs, Industrial Processes, Emerging Fields"
    • Place of Presentation
      Center for Interdisciplinary Research (ZiF), Bielefeld University, Germany (P24, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] ホタルルシフェラーゼの発光反応における水素結合ネットワークの重要性2012

    • Author(s)
      前中美華,加藤太一郎,久保貴矢,丹羽一樹,近江谷克裕,武尾正弘,根来誠司
    • Organizer
      第64回日本生物工学会大会要旨集
    • Place of Presentation
      神戸国際会議場 (4Ca07, 口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Enantioselective thioesterification activity in bioluminescent enzyme, firefly luciferase2012

    • Author(s)
      D.Kato, Y.Hiraishi, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada
    • Related Report
      2012 Research-status Report
  • [Presentation] Color tuning of bioluminescence reaction by modifying the hydrogen bond network around the active site in firefly luciferase2012

    • Author(s)
      M.Maenaka, D.Kato, T.Kubo, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada
    • Related Report
      2012 Research-status Report
  • [Presentation] Quantum yield and kinetics of the bioluminescence reaction using various beetle luciferases2012

    • Author(s)
      K.Niwa, Y.Ichino, M.Maenaka, T.Kubo, Y.Hiraishi, D.Kato, Y.Ohmiya
    • Organizer
      ISBC2012 - 17th International Symposium on Bioluminescence and Chemiluminescence
    • Place of Presentation
      Guelph, Canada
    • Related Report
      2012 Research-status Report
  • [Presentation] Finding the enantioselective thioesterification activity in firefly luciferase2012

    • Author(s)
      D.Kato, Y.Hiraishi, K.Yokoyama, K.Niwa, Y.Ohmiya, M.Takeo, S.Negoro
    • Organizer
      7th CeBiTec Symposium "Bio-integrated Organic Synthesis in Industry:Biocatalytic Breakthroughs, Industrial Processes, Emerging Fields
    • Place of Presentation
      Bielefeld, Germany
    • Related Report
      2012 Research-status Report
  • [Presentation] ホタルルシフェラーゼの発光反応における水素結合ネットワークの重要性2012

    • Author(s)
      前中美華, 加藤太一郎, 久保貴矢, 丹羽一樹, 近江谷克裕, 武尾正弘, 根来誠司
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Research-status Report
  • [Presentation] 活性部位周辺の水素結合ネットワークに着目したホタルルシフェラーゼの発光色制御2011

    • Author(s)
      前中美華,加藤太一郎,久保貴矢,丹羽一樹,近江谷克裕,武尾正弘,根来誠司
    • Organizer
      第15回生体触媒化学シンポジウム(東京)要旨集
    • Place of Presentation
      慶應義塾大学薬学部芝共立キャンパス (P09, ポスター発表)
    • Year and Date
      2011-12-22
    • Related Report
      2013 Final Research Report
  • [Presentation] ゲンジボタル由来ルシフェラーゼ活性中心における酵素-基質間相互作用2011

    • Author(s)
      前中美華,加藤太一郎,丹羽一樹,近江谷克裕,武尾正弘,根来誠司
    • Organizer
      生物発光化学発光研究会第28回学術講演会要旨集
    • Place of Presentation
      長崎大学文教キャンパス (P02, ポスター発表)
    • Year and Date
      2011-10-08
    • Related Report
      2013 Final Research Report
  • [Presentation] ゲンジボタル由来ルシフェラーゼ活性中心Ser286変異体の発光活性解析2011

    • Author(s)
      久保貴矢,加藤太一郎,前中美華,丹羽一樹,近江谷克裕,武尾正弘,根来誠司
    • Organizer
      生物発光化学発光研究会第28回学術講演会要旨集
    • Place of Presentation
      長崎大学文教キャンパス (P03, ポスター発表)
    • Year and Date
      2011-10-08
    • Related Report
      2013 Final Research Report
  • [Presentation] Acyl-CoA synthetase (ACS) can catalyze the amide bond formation reaction between fatty acid and amino acid2011

    • Author(s)
      D.Kato, T.Kamon, E.Nishimura, M.Takeo, S.Negoro
    • Organizer
      Biotrans2011 - 10th International Symposium on Biocatalysis
    • Place of Presentation
      Giardini Naxos (Messina) Sicily, Italy (P140, ポスター発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] ホタルルシフェラーゼが触媒するチオエステル化反応で基質認識をつかさどる部位の解析2011

    • Author(s)
      加藤太一郎,平石善洋,武尾正弘,根来誠司
    • Organizer
      第63回日本生物工学会大会(2011)講演要旨集
    • Place of Presentation
      東京農工大学小金井キャンパス ( 92Dp16, 口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] アシル-CoAシンセターゼは脂肪酸とアミノ酸のアミド化反応も触媒できる2011

    • Author(s)
      加藤太一郎,掃部恭弘,西村絵梨子,武尾正弘,根来誠司
    • Organizer
      第63回日本生物工学会大会(2011)講演要旨集
    • Place of Presentation
      東京農工大学小金井キャンパス (3Da07, 口頭発表)
    • Related Report
      2013 Final Research Report
  • [Presentation] Acyl-CoA synthetase (ACS) can catalyze the amide bond formation reaction between fatty acid and amino acid2011

    • Author(s)
      D.Kato, T.Kamon, E.Nishimura, M.Takeo, S.Negoro
    • Organizer
      Biotrans2011 - 10th International Symposium on Biocatalysis
    • Place of Presentation
      Giardini Naxos (Messina) Sicily, Italy
    • Related Report
      2011 Research-status Report
  • [Presentation] ホタルルシフェラーゼが触媒するチオエステル化反応で基質認識をつかさどる部位の解析2011

    • Author(s)
      加藤太一郎, 平石善洋, 武尾正弘, 根来誠司
    • Organizer
      第63回日本生物工学会大会(2011)
    • Place of Presentation
      東京農工大学小金井キャンパス(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] アシル-CoA シンセターゼは脂肪酸とアミノ酸のアミド化反応も触媒できる2011

    • Author(s)
      加藤太一郎,掃部恭弘, 西村絵梨子, 武尾正弘, 根来誠司
    • Organizer
      第63回日本生物工学会大会(2011)
    • Place of Presentation
      東京農工大学小金井キャンパス(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] ゲンジボタル由来ルシフェラーゼ活性中心における酵素-基質間相互作用2011

    • Author(s)
      前中美華, 加藤太一郎, 丹羽一樹, 近江谷克裕, 武尾正弘, 根来誠司
    • Organizer
      生物発光化学発光研究会第28回学術講演会
    • Place of Presentation
      長崎大学文教キャンパス(長崎県)
    • Related Report
      2011 Research-status Report
  • [Presentation] ゲンジボタル由来ルシフェラーゼ活性中心Ser286変異体の発光活性解析2011

    • Author(s)
      久保貴矢, 加藤太一郎, 前中美華, 丹羽一樹, 近江谷克裕, 武尾正弘, 根来誠司
    • Organizer
      生物発光化学発光研究会第28回学術講演会
    • Place of Presentation
      長崎大学文教キャンパス(長崎県)
    • Related Report
      2011 Research-status Report
  • [Presentation] 活性部位周辺の水素結合ネットワークに着目したホタルルシフェラーゼの発光色制御2011

    • Author(s)
      前中美華, 加藤太一郎, 久保貴矢, 丹羽一樹, 近江谷克裕, 武尾正弘, 根来誠司
    • Organizer
      第15 回生体触媒化学シンポジウム(東京)
    • Place of Presentation
      慶應義塾大学薬学部芝共立キャンパス(東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] ホタルの生合成経路を模倣したL-ルシフェリン発光システムの構築

    • Author(s)
      加藤太一郎, 白川大暉, 奥田真利, 丹羽一樹, 町田幸大,今高寛晃, 武尾正弘, 根来誠司
    • Organizer
      生物発光化学発光研究会第30回学術講演会
    • Place of Presentation
      東京工業大学蔵前会館
    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.eng.u-hyogo.ac.jp/msc/msc3/top.html

    • Related Report
      2013 Final Research Report
  • [Remarks] 兵庫県立大学 大学院工学研究科 物質系工学専攻 環境・生物工学研究グループHP

    • URL

      http://www.eng.u-hyogo.ac.jp/msc/msc3/top.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 兵庫県立大学大学院工学研究科 物質系工学専攻 環境・生物工学研究グループ

    • URL

      http://www.eng.u-hyogo.ac.jp/msc/msc3/top.html

    • Related Report
      2012 Research-status Report
  • [Remarks]

    • URL

      http://www.eng.u-hyogo.ac.jp/msc/msc3/top.html

    • Related Report
      2011 Research-status Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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