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Elucidation of the plant sex-determining gene using minute processing of the Y chromosome and expression profiling.

Research Project

Project/Area Number 23770070
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Morphology/Structure
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

KAZAMA Yusuke  独立行政法人理化学研究所, イオンビーム育種研究チーム, 研究員 (80442945)

Research Collaborator KAWANO Shigeyuki  東京大学, 大学院新領域創成科学研究科, 教授 (70161338)
ISHII Kotaro  独立行政法人理化学研究所, 生物照射チーム, 特別研究員 (50632965)
CHARLESWORTH Deborah  School of Biological Sciences, University of Edinburgh, UK, Institute of Evolutionary Biology
FILATOV Dimitry  University of Oxford, UK, Department of Plant Science,
Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywords重イオンビーム / 雌雄異株植物 / ヒロハノマンテマ / 突然変異 / 植物 / 加速器 / 性染色体 / 性決定遺伝子
Research Abstract

Seventeen hermaphrodite mutants and ten asexual mutants that have deletions on the Y chromosome were produced by heavy-ion irradiation in the dioecious plant Silene latifolia. By performing next-generation sequencing, 1741 of Y-linked fragments were identified. The regions for sex determining genes were narrowed down by identifying commonly deleted fragment in hermaphrodite or asexual mutants, respectively. Expression-profiling method using laser microdissection was developed to determine genes expressing in the sex-specific tissues.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (55 results)

All 2013 2012 2011 Other

All Journal Article (17 results) (of which Peer Reviewed: 16 results) Presentation (33 results) Book (2 results) Remarks (3 results)

  • [Journal Article] Evaluation of LET-dependent effect in heavy-ion mutagenesis using rapid mutation detection system in Arabidopsis thaliana.2013

    • Author(s)
      Kazama Y, Ma L, Hirano T, Ohbu S, Shirakawa Y, Hatakeyama S, Tanaka S, Abe T
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 46

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A DFR-deficient mutant of Nicotiana tabacum induced by C-ion beam irradiation.2013

    • Author(s)
      Kazama Y, Fujiwara MT, Takehisa H, Ohbu S, Saito H, Ichida H, Hayashi Y, Abe T
    • Journal Title

      RIKEN Accel Prog Rep.

      Volume: 46

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of a heavy-ion induced white flower mutant of allotetraploid Nicotiana tabacum.2013

    • Author(s)
      Kazama Y, Fujiwara MT, Takehisa H, Ohbu S., Saito H, Ichida H, Hayashi Y, Abe T.他
    • Journal Title

      Plant Cell Reports

      Volume: 32(1) Issue: 1 Pages: 11-19

    • DOI

      10.1007/s00299-012-1336-7

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] SlWUS1; A novel X-linked gene having no homologous Y-linked copy in Silene latifolia2012

    • Author(s)
      Kazama, Y., Nishihara, K., Fujiwara, M.T. Abe, T., and Kawano, S
    • Journal Title

      G3

      Volume: 2 Issue: 10 Pages: 1269-1278

    • DOI

      10.1534/g3.112.003749

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rapid evaluation of effective linear energy transfer in heavy-ion mutagenesis of <i>Arabidopsis thaliana</i>2012

    • Author(s)
      Y. Kazama, L. Ma, T. Hirano, S. Ohbu, Y. Shirakawa, S. Hatakeyama, S. Tanaka, T. Abe
    • Journal Title

      Plant Biotechnology

      Volume: 29 Issue: 5 Pages: 441-445

    • DOI

      10.5511/plantbiotechnology.12.0921a

    • NAID

      130002500889

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel method of utilizing heavy-ion beams for efficient induction of large deletions in Arabidopsis thaliana.2012

    • Author(s)
      Hirano T, Kazama Y, Ohbu S, Shirakawa Y, Liu Y, Kambara T, Fukunishi N, Abe T
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 45 Pages: 210-210

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of DNAs mutated by C-ion beam with highly efficient LET in mutagenesis of Arabidopsis thaliana.2012

    • Author(s)
      Kazama Y, Hirano T, Saito H, Liu Y, Ohbu S, Hayashi Y, Abe T
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 45 Pages: 209-209

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of linear energy transfer on deletion induction by irradiation with heavy-ion beams in the apomictic plant Panicum maximum.2012

    • Author(s)
      Takahara M, Ebina M, Morita R, Kazama Y, Abe T, Takamizo T, Nakagawa H
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 45 Pages: 215-215

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular nature of mutations induced by high-LET irradiation with argon and carbon ions in Arabidopsis thaliana.2012

    • Author(s)
      T. Hirano, Y. Kazama, S. Ohbu, Y. Shirakawa, L. Yang, T. Kambara, N. Fukunishi, T. Abe
    • Journal Title

      Mutation Research: Fundamental and Molecular Mechanisms of Mutagenesis

      Volume: 735 Issue: 1-2 Pages: 19-31

    • DOI

      10.1016/j.mrfmmm.2012.04.010

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of plastid movement in the pollen tube of Arabidopsis thaliana2012

    • Author(s)
      Fujiwara M, Yoshioka Y, Hirano T, Kazama Y, Abe T, Hayashi K, Itoh R
    • Journal Title

      Plant Signal Behav

      Volume: 7 Pages: 34-37

    • Related Report
      2012 Final Research Report
  • [Journal Article] 重イオンビームによる品種改良技術の開発から遺伝子機能解明へ2012

    • Author(s)
      阿部知子,平野智也,風間裕介
    • Journal Title

      日本物理学会誌

      Volume: 67 Pages: 680-684

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of plastid movement in the pollen tube of Arabidopsis thaliana.2012

    • Author(s)
      Fujiwara MT, Yoshioka Y, Hirano T, Kazama Y, Abe T, Hayashi K, Itoh RD.
    • Journal Title

      Plant Signal Behav.

      Volume: VOL.7 Pages: 34-37

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Narrowing Down the Mapping of Plant Sex-Determination Regions Using New Y Chromosome-Specific Markers and Heavy-Ion-Beam Irradiation-Induced Y Deletion Mutants in Silene latifolia2011

    • Author(s)
      Fujita, N., Torii, C., Ishii, K., Aonuma, W., Shimizu, Y., Kazama, Y., Abe, T., Kawano, S.
    • Journal Title

      G3

      Volume: 2 Issue: 2 Pages: 271-278

    • DOI

      10.1534/g3.111.001420

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana.2011

    • Author(s)
      Y. Kazama, T. Hirano, H. Saito, Y. Liu, S. Ohbu, Y. Hayashi, T. Abe
    • Journal Title

      BMC Plant Biology

      Volume: 11 Issue: 1 Pages: 161-161

    • DOI

      10.1186/1471-2229-11-161

    • Related Report
      2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mutation frequency analysis of M_1 plants irradiated with heavy-ion beams.2011

    • Author(s)
      Kazama Y, Hirano T, Ohbu S, Shirakawa Y, Abe T
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 44 Pages: 267-267

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of LET on mutation induction by heavy-ion beam irradiation in imbibed seeds of Arabidopsis thaliana.2011

    • Author(s)
      Hirano T, Kazama Y, Ohbu S, Shirakawa Y, Abe T
    • Journal Title

      RIKEN Accel Prog Rep

      Volume: 44 Pages: 268-268

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Production of bisexual flofwer-producing mutants of the dioecious plant, Silene latifolia, by using γ-ray and the heavy-ion.2011

    • Author(s)
      Aonuma W, Ishii K, Torii C, Fujita N, Shimizu Y, Nishihara K, Kazama Y, Abe T, Kawano S
    • Journal Title

      RIKEN Prog Rep

      Volume: 44 Pages: 271-271

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] 重イオンビームを用いたシロイヌナズナタンデム遺伝子破壊ラインの構築2013

    • Author(s)
      風間裕介
    • Organizer
      日本育種学会第123回講演会
    • Place of Presentation
      東京
    • Year and Date
      2013-03-28
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] 重イオンビームによるオンデマンド変異誘発法の開発とタンデム遺伝a子破壊ラインの構築2013

    • Author(s)
      風間裕介
    • Organizer
      日本植物生理学会第54回年会
    • Place of Presentation
      岡山
    • Year and Date
      2013-03-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 重イオンビームによるオンデマンド変異誘発法の開発とタンデム遺伝子破壊ラインの構築2013

    • Author(s)
      風間 裕介
    • Organizer
      日本植物生理学会第54回年会
    • Place of Presentation
      岡山
    • Related Report
      2012 Annual Research Report
  • [Presentation] LET-dependent effects of heavy-ion irradiation on mutation induction in Arabidopsis thaliana2012

    • Author(s)
      Kazama Y
    • Organizer
      8th International Symposium on Swift Heavy Ions in Matter (SHIM 2012)
    • Place of Presentation
      Kyoto
    • Year and Date
      2012-10-26
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒロハノマンテマ性染色体の組換え抑制によって生じたSlAP3X/Y 周辺の構造変化2012

    • Author(s)
      石井公太郎
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Year and Date
      2012-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒロハノマンテマのSlAP3 欠損変異体を含むY 染色体部分欠損変異体の網羅的単離2012

    • Author(s)
      青沼航
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Year and Date
      2012-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒロハノマンテマの2 つのホモログ遺伝子SlSUP とSlWUS の発現と性染色体座乗2012

    • Author(s)
      風間裕介
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Year and Date
      2012-09-15
    • Related Report
      2012 Final Research Report
  • [Presentation] 雌雄異株植物ヒロハノマンテマの効率的な染色体標本の作製2012

    • Author(s)
      石井公太郎
    • Organizer
      日本植物形態学会第24回総会・大会
    • Place of Presentation
      姫路
    • Year and Date
      2012-09-14
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] 重イオンビーム誘発性転換変異体を用いた植物Y 染色体性決定領域の解析2012

    • Author(s)
      風間裕介
    • Organizer
      新学術領域「ゲノム支援」2012 年度 拡大班会議
    • Place of Presentation
      御殿場
    • Year and Date
      2012-08-29
    • Related Report
      2012 Final Research Report
  • [Presentation] 重イオンビーム照射によるアポミクシス遺伝子領域での欠失変異誘発と線量・LET の影響2012

    • Author(s)
      高原学
    • Organizer
      日本育種学会第121回講演会
    • Place of Presentation
      宇都宮
    • Year and Date
      2012-03-30
    • Related Report
      2012 Final Research Report
  • [Presentation] Optimization of ion-beam irradiation for highly efficient mutagenesis using a rapid detection method of mutation2012

    • Author(s)
      Kazama Y
    • Organizer
      EMBO Workshop: Genetic stability and change: Genome maintenance mechanisms in plants.
    • Place of Presentation
      Roscoff, France
    • Related Report
      2012 Final Research Report
  • [Presentation] LET-dependent effects of heavy-ion irradiation on mutation induction in Arabidopsis thaliana2012

    • Author(s)
      Yusuke Kazama
    • Organizer
      8th International Symposium on Swift Heavy Ions in Matter
    • Place of Presentation
      京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒロハノマンテマ性染色体の組換え抑制によって生じたSlAP3X/Y周辺の構造変化2012

    • Author(s)
      石井 公太郎
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒロハノマンテマのSlAP3欠損変異体を含むY染色体部分欠損変異体の網羅的単離2012

    • Author(s)
      青沼 航
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒロハノマンテマの2つのホモログ遺伝子SlSUPと SlWUSの発現と性染色体座乗2012

    • Author(s)
      風間 裕介
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      姫路
    • Related Report
      2012 Annual Research Report
  • [Presentation] 重イオンビーム誘発性転換変異体を用いた植物Y染色体性決定領域の解析2012

    • Author(s)
      風間 裕介
    • Organizer
      新学術領域「ゲノム支援」2012年度 拡大班会議
    • Place of Presentation
      御殿場
    • Related Report
      2012 Annual Research Report
  • [Presentation] シロイヌナズナのM1 世代での迅速な突然変異検出系を用いたLET 効果の解析2011

    • Author(s)
      風間裕介
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井
    • Year and Date
      2011-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] シロイヌナズナを用いたDNA 突然変異へのLET 効果の解析(2)2011

    • Author(s)
      平野智也
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井
    • Year and Date
      2011-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] ヒロハノマンテマX 染色体連鎖遺伝子SlWUS1 は性染色体進化の過程でY 染色体から消失した?2011

    • Author(s)
      風間裕介
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-19
    • Related Report
      2012 Final Research Report
  • [Presentation] アルビノ変異セクターを指標とした重イオンビーム変異迅速検出系の確立2011

    • Author(s)
      風間裕介
    • Organizer
      日本植物形態学会第23回総会・大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 重イオンビーム誘発突然変異に対するLET 効果の解析2011

    • Author(s)
      平野智也
    • Organizer
      第29回日本植物細胞分子生物学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2011-09-07
    • Related Report
      2012 Final Research Report
  • [Presentation] Ion-beam mutagenesis: New technology for the control of deletion-size by heavy-ion beam irradiation2011

    • Author(s)
      Kazama Y
    • Organizer
      18th International Botanical Congress (IBC2011)
    • Place of Presentation
      Melbourne, Australia
    • Related Report
      2012 Final Research Report
  • [Presentation] Ion beam mutagenesis: new innovative technology for mutation breeding2011

    • Author(s)
      Abe T
    • Organizer
      18th International Botanical Congress (IBC2011)
    • Place of Presentation
      Melbourne, Australia
    • Related Report
      2012 Final Research Report
  • [Presentation] Ion-beam mutagenesis: New technology for the control of deletion-size by heavy-ion beam irradiation2011

    • Author(s)
      Kazama Y, Hirano T, Nishihara K, Ohbu S, Shirakawa Y, Hayashi Y, Abe T.
    • Organizer
      18th International Botanical Congress
    • Place of Presentation
      Melbourne, Australia
    • Related Report
      2011 Research-status Report
  • [Presentation] Ion beam mutagenesis: new innovative technology for mutation breeding.2011

    • Author(s)
      Abe T, Kazama Y, Hirano T, Morita R, Hayashi Y
    • Organizer
      18th International Botanical Congress
    • Place of Presentation
      Melbourne, Australia
    • Related Report
      2011 Research-status Report
  • [Presentation] Examination of the relationship between the killing effect and induced mutation by irradiation with different heavy-ion beams in Neurospora crassa2011

    • Author(s)
      Ma L, Kazama Y, Abe T, Tanaka S, Hatakeyama S.
    • Organizer
      BIT's 1st Annual World Congress of Microbes-2011
    • Place of Presentation
      Beijing, China
    • Related Report
      2011 Research-status Report
  • [Presentation] シロイヌナズナのM1世代での迅速な突然変異検出系を用いたLET効果の解析2011

    • Author(s)
      風間 裕介、 馬 立秋、 平野 智也、 大部 澄江、 白川 侑希、林 祐子、阿部 知子
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井県立大学 (福井県)
    • Related Report
      2011 Research-status Report
  • [Presentation] シロイヌナズナを用いたDNA突然変異へのLET効果の解析 (2)2011

    • Author(s)
      平野 智也、 風間 裕介、 大部 澄江、 白川 侑希、 林 祐子、 阿部 知子
    • Organizer
      日本育種学会第120回講演会
    • Place of Presentation
      福井県立大学 (福井県)
    • Related Report
      2011 Research-status Report
  • [Presentation] アルビノ変異セクターを指標とした重イオンビーム変異迅速検出系の確立2011

    • Author(s)
      風間 裕介、 馬 立秋、 平野 智也、 大部 澄江、 白川 侑希、 林 祐子、 畠山 晋、 阿部 知子
    • Organizer
      日本植物形態学会第23回総会・大会
    • Place of Presentation
      日本女子大学 (東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] ヒロハノマンテマX染色体連鎖遺伝子SlWUS1は性染色体進化の過程でY染色体から消失した?2011

    • Author(s)
      風間裕介、 西原潔、 阿部知子、 河野重行
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学 (東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] fugu5変異体に対する重イオンビーム照射で作出した変異体―補償作用によって昂進される細胞伸長制御系の遺伝学的解析―2011

    • Author(s)
      片野 真奈、 風間 裕介、 平野 智也、 阿部 知子、堀口 吾朗、Ferjani Ali、塚谷 裕一
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学 (東京都)
    • Related Report
      2011 Research-status Report
  • [Presentation] アカパンカビにおける炭素、鉄、アルゴンイオンビームの致死効果とad-3 遺伝子座での前方向突然変異の解析2011

    • Author(s)
      馬 立秋、 風間 裕介、阿部 知子、田中 秀逸、畠山 晋
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都大学 (京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] 重イオンビーム誘発突然変異に対するLET効果の解析2011

    • Author(s)
      平野 智也,、風間 裕介、大部 澄江、白川 侑希、阿部 知子
    • Organizer
      第29回日本植物細胞分子生物学会大会
    • Place of Presentation
      九州大学 (福岡県)
    • Related Report
      2011 Research-status Report
  • [Book] The role of repetitive sequences in the evolution of plant sex chromosomes, In : New Insights on Plant Sex Chromosomes (Rafael Navajas-Perez (ed))2012

    • Author(s)
      Kazama Y, Matsunaga S
    • Publisher
      Nova Schience Publishers, Hauppauge, New York, U.S.A.
    • Related Report
      2012 Final Research Report
  • [Book] New Insights on Plant Sex Chromosomes2012

    • Author(s)
      Kazama Y, Matsunaga S
    • Publisher
      Nova Schience Publishers
    • Related Report
      2011 Research-status Report
  • [Remarks] (1)受賞風間裕介、平野智也、理研・研究奨励賞、2013年4月5日

    • Related Report
      2012 Final Research Report
  • [Remarks] (2)アウトリーチ活動風間裕介、出前授業、「オスが子供を産む?重イオンビームで迫る植物Y染色体の不思議」、唐津東高校40名、2013年3月19日、唐津

    • Related Report
      2012 Final Research Report
  • [Remarks] (3)アウトリーチ活動風間裕介、理研DAY:研究者と話そう、科学技術館、約40名、2013年3月17日、北の丸

    • Related Report
      2012 Final Research Report

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Published: 2011-08-05   Modified: 2019-07-29  

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