• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Analysis of the diversity of fungal endophytes with metagenomics

Research Project

Project/Area Number 23770083
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

OSONO Takashi  京都大学, 生態学研究センター, 准教授 (90335307)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2012: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsエンドファイト / メタゲノミクス / 多様性 / 林冠生物学 / 次世代シーケンサー / 熱帯林 / 菌類
Research Abstract

The alpha diversity and taxonomic composition of endophytic fungi associated with leaves of six tree species were examined in two lowland tropical forests and a subtropical forest in Asia and Australia, using ITS metabarcoding with Roche 454 pyrosequencing. A total of 95,278 fungal reads were clustered into 224 OTUs at 97% similarity threshold. Of the 178 OTUs identified to the phylum, 148 and 30 OTUs belonged to Ascomycota and Basidiomycota, respectively. Major OTUs were common foliar endophytes and pathogens. The low similarities of endophytic fungal assemblages between leaf samples of a single tree species suggested high beta diversity.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (59 results)

All 2014 2013 2012 2011 Other

All Journal Article (14 results) (of which Peer Reviewed: 11 results) Presentation (29 results) Book (13 results) Remarks (3 results)

  • [Journal Article] Metagenomic approach yields insights into fungal diversity and functioning. In : Species Diversity and Community Structure : Novel Patterns and Processes in Plants, Insects, and Fungi.2014

    • Author(s)
      Osono T.
    • Journal Title

      Springer Briefs in Biology (eds. By T. Sota et al.)( Springer, Berlin)

      Pages: 1-23

    • URL

      http://link.springer.com/chapter/10.1007%2F978-4-431-54261-2_1

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Diversity and ecology of endophytic and epiphytic fungi of tree leaves in Japan : a review2014

    • Author(s)
      Osono T.
    • Journal Title

      In : Advances in Endophytic Research (ed. by V.C. Verma and A.C. Gange)(Springer, Germany)

      Pages: 3-26

    • URL

      http://link.springer.com/chapter/10.1007%2F978-81-322-1575-2_1

    • Related Report
      2013 Final Research Report
  • [Journal Article] Comparison of the diversity, composition, and host recurrence of xylariaceous endophytes in subtropical, cool temperate, and subboreal regions in Japan2014

    • Author(s)
      Ikeda A., Matsuoka S., Masuya H., Mori A.S., Hirose D. & Osono T.
    • Journal Title

      Population Ecology

      Volume: 56 Pages: 289-300

    • URL

      http://link.springer.com/article/10.1007/s10144-013-0412-3

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Assessment of the fungal diversity and succession of ligninolytic endophytes in Camellia japonica leaves using clone library analysis2013

    • Author(s)
      Hirose D., Matsuoka S. & Osono T.
    • Journal Title

      Mycologia

      Volume: 105 Pages: 837-843

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Microfungi associated with withering willow wood in ground contact near Syowa Station, East Antarctica for 40 years2013

    • Author(s)
      Hirose D., Tanabe Y., Uchida M., Kudoh & Osono T.
    • Journal Title

      Polar Biology

      Volume: 36 Pages: 919-924

    • NAID

      120005474490

    • URL

      http://www.mycologia.org/content/105/4/837.abstract

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Microfungi associated with a myrmecophyte Macaranga bancana2013

    • Author(s)
      Hirose D., Sakai S., Itioka T. & Osono
    • Journal Title

      Tropics

      Volume: 22 Pages: 19-25

    • URL

      https://www.jstage.jst.go.jp/article/tropics/22/1/22_19/_article/-char/ja/

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Diversity and ubiquity of xylariaceous endophytes in live and dead leaves of temperate forest trees2013

    • Author(s)
      Osono T., Tateno O. & Masuya H.
    • Journal Title

      Mycoscience

      Volume: 54 Pages: 54-61

    • URL

      http://www.sciencedirect.com/science/article/pii/S1340354012000125

    • Related Report
      2013 Annual Research Report 2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biodiversity of fungi in a tropical rain forest. Eds by Sakai S., Ishii R. & Yamamura N. Collapse and Restoration of Ecosystem Networks with Human Activity2013

    • Author(s)
      Osono T., Hirose D., Nagamasu H. & Itioka T.
    • Journal Title

      RIHN Project Report

      Volume: (Published by Research Institute for Humanity and Nature) Pages: 137-140

    • Related Report
      2013 Final Research Report
  • [Journal Article] Endophytic fungi associated with leaves of Betulaceae in Japan2012

    • Author(s)
      Osono T. & Masuya H.
    • Journal Title

      Canadian Journal of Microbiology

      Volume: 58 Pages: 507-515

    • NAID

      130007004854

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Endophytic fungal assemblages on leaves of 73 deciduous tree species in a cool temperate forest2012

    • Author(s)
      Osono T.
    • Journal Title

      Applied Forest Science

      Volume: 21 Pages: 13-20

    • NAID

      110009420197

    • URL

      http://www.nrcresearchpress.com/doi/abs/10.1139/w2012-018#.U2CA2HMspaI

    • Related Report
      2013 Final Research Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biodiversity of fungi in a tropical rain forest2012

    • Author(s)
      Osono T., Hirose D., Nagamasu H. & Itioka T.
    • Journal Title

      Collapse and Restoration of Ecosystem Networks with Human Activity

      Volume: 1 Pages: 137-140

    • Related Report
      2012 Research-status Report
  • [Journal Article] Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri2011

    • Author(s)
      Osono T. & Hirose D.
    • Journal Title

      Forest Pathology

      Volume: 41 Pages: 156-162

    • NAID

      120005593694

    • Related Report
      2013 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Decomposition of wood, petiole, and leaf litter by Xylaria species from northern Thailand2011

    • Author(s)
      Osono T., To-Anun C., Hagiwara Y. & Hirose D.
    • Journal Title

      Fungal Ecology

      Volume: 4 Pages: 210-218

    • NAID

      120004397859

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Diversity and functioning of fungi associated with leaf litter decomposition in an Asian climatic gradient2011

    • Author(s)
      Osono T.
    • Journal Title

      Fungal Ecology

      Volume: 4 Pages: 375-385

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 知床羅臼岳の針広混交林における樹木葉内生菌の標高分布とその制限要因2013

    • Author(s)
      阪口瀬理奈・松岡俊将・川口恵里・森章・広瀬大・大園享司
    • Organizer
      日本菌学会第57回大会
    • Place of Presentation
      東京農業大学, 東京
    • Related Report
      2013 Final Research Report
  • [Presentation] 知床羅臼岳の標高傾度に沿った内生菌類群集の変化2013

    • Author(s)
      阪口瀬理奈・松岡俊将・川口恵里・森章・大園享司
    • Organizer
      日本生態学会第60回大会
    • Place of Presentation
      グランシップ静岡(ポスター講演)
    • Related Report
      2013 Final Research Report
  • [Presentation] 知床羅臼岳の針広混交林における樹木葉内生菌の標高分布とその制限要因2013

    • Author(s)
      阪口瀬理奈・松岡俊将・川口恵里・森章・広瀬大・大園享司
    • Organizer
      日本菌学会第57回大会
    • Place of Presentation
      東京農業大学
    • Related Report
      2013 Annual Research Report
  • [Presentation] Ecology of litter-decomposing macrofungi in subtropical, temperate, and subalpine forests in Japan2013

    • Author(s)
      Osono T, Hirose D.
    • Organizer
      Asian Mycological Congress 2013
    • Place of Presentation
      China National Convention Center
    • Related Report
      2013 Annual Research Report
  • [Presentation] Spatiotemporal changes of ectomycorrhizal fungal community in a subtropical forest in Japan2013

    • Author(s)
      Matsuoka S, Sakaguchi C, Kawaguchi E, Hirose D, Osono T.
    • Organizer
      Asian Mycological Congress 2013
    • Place of Presentation
      China National Convention Center
    • Related Report
      2013 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたアジア熱帯林における内生菌類の群集構造の比較2012

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・田邊晶文・東樹宏和・大園享司
    • Organizer
      日本菌学会第56回大会
    • Place of Presentation
      岐阜大学, 岐阜
    • Related Report
      2013 Final Research Report
  • [Presentation] Next-generation sequencing reveals the hyper-diversity of endophytic fungi associated with tree leaves in tropical forests2012

    • Author(s)
      Sakaguchi C, Matsuoka S, Ito K, Hirose D, Yazawa S, Nishimura O, Tanabe A, Toju H, Osono T.
    • Organizer
      The 5th East Asian Federation of Ecological Societies (EAFES) International Congress
    • Place of Presentation
      Ryukoku University, Shiga, Japan (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] Diversity of Xylariaceous fungi on living and dead leaves : endophytes become saprophytes?2012

    • Author(s)
      Ikeda A, Hirose D, Matsuoka S, Osono T.
    • Organizer
      The 5th East Asian Federation of Ecological Societies (EAFES) International Congress
    • Place of Presentation
      Ryukoku University, Shiga, Japan (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] 次世代シーケンサーを用いたアジア熱帯林における内生菌類の群集構造の比較2012

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・田邊晶文・東樹宏和・大園享司
    • Organizer
      日本菌学会第56回大会
    • Place of Presentation
      岐阜大学
    • Related Report
      2012 Research-status Report
  • [Presentation] Next-generation sequencing reveals the hyper-diversity of endophytic fungi associated with tree leaves in tropical forests2012

    • Author(s)
      Sakaguchi C, Matsuoka S, Ito K, Hirose D, Yazawa S, Nishimura O, Tanabe A, Toju H, Osono T
    • Organizer
      The 5th East Asian Federation of Ecological Societies (EAFES) International Congress
    • Place of Presentation
      龍谷大学(滋賀県)
    • Related Report
      2011 Research-status Report
  • [Presentation] 次世代シーケンサーで明らかにする亜熱帯林内生菌の超多様性2011

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・大園享司
    • Organizer
      日本菌学会第55回大会
    • Place of Presentation
      北海道大学, 札幌
    • Related Report
      2013 Final Research Report
  • [Presentation] カバノキ科樹木の葉に見いだされる菌類エンドファイトの多様性2011

    • Author(s)
      大園享司・升屋勇人
    • Organizer
      日本菌学会第55回大会
    • Place of Presentation
      北海道大学, 札幌
    • Related Report
      2013 Final Research Report
  • [Presentation] 国内亜熱帯林におけるクロサイワイタケ科内生菌の多様性―気候帯間比較による評価2011

    • Author(s)
      池田あんず・広瀬大・松岡俊将・大園享司
    • Organizer
      日本菌学会第55回大会
    • Place of Presentation
      北海道大学, 札幌
    • Related Report
      2013 Final Research Report
  • [Presentation] Diversity and host-specificity of endophytic Xylariaceae in a subtropical forest in Japan inferred from rDNA sequence analysis2011

    • Author(s)
      Ikeda A, Hirose D, Matsuoka S, Osono T.
    • Organizer
      XIII International Congress of Mycology (IUMS2011 Sapporo)
    • Place of Presentation
      Sapporo Convention Center, Sapporo, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] 454 sequencing reveals the hyper-diversity of endophytic fungi associated with tree leaves in a subtropical forest in southern Japan2011

    • Author(s)
      Sakaguchi C, Matsuoka S, Ito K, Hirose D, Yazawa S, Nishimura O, Osono T.
    • Organizer
      XIII International Congress of Mycology (IUMS2011 Sapporo)
    • Place of Presentation
      Sapporo Convention Center, Sapporo, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] Environmental DNA analysis reveals the fungal succession on Camellia japonica leaves and the functioning of ligninolytic endophytes2011

    • Author(s)
      Osono T, Hirose D.
    • Organizer
      XIII International Congress of Mycology (IUMS2011 Sapporo)
    • Place of Presentation
      Sapporo Convention Center, Sapporo, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] Metagenomics of hyper-diversity of tropical fungi2011

    • Author(s)
      Osono T.
    • Organizer
      日本進化学会2011京都シンポジウム「未知の多様性探索とゲノム情報」
    • Place of Presentation
      京都大学, 京都
    • Related Report
      2013 Final Research Report
  • [Presentation] Next-generation sequencing reveals the hyper-diversity of endophytic fungi associated with tree leaves in a subtropical forest in southern Japan2011

    • Author(s)
      Sakaguchi C, Matsuoka S, Ito K, Hirose D, Yazawa S, Nishimura O, Osono T.
    • Organizer
      The 5th International Symposium of the Biodiversity & Evolution gCOE
    • Place of Presentation
      Kyoto University, Kyoto, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] The diversity of fungi in ant-plants and a three-way symbiosis2011

    • Author(s)
      Nagao Y, Hirose D, Osono T.
    • Organizer
      The 5th International Symposium of the Biodiversity & Evolution gCOE
    • Place of Presentation
      Kyoto University, Kyoto, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] Phylogenetic diversity and host specificity of Coccomyces in Asian forests2011

    • Author(s)
      Osono T, Hirose D.
    • Organizer
      The 5th International Symposium of the Biodiversity & Evolution gCOE
    • Place of Presentation
      Kyoto University, Kyoto, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] The diversity of Xylariaceous endophytes in a subtropical forest in Japan : comparison with different climate zones2011

    • Author(s)
      Ikeda A, Hirose D, Matsuoka S, Osono T.
    • Organizer
      The 5th International Symposium of the Biodiversity & Evolution gCOE
    • Place of Presentation
      Kyoto University, Kyoto, Japan. (poster session)
    • Related Report
      2013 Final Research Report
  • [Presentation] 亜熱帯林における内生菌の種多様性と宿主特異性2011

    • Author(s)
      池田あんず・広瀬大・松岡俊将・大園享司
    • Organizer
      京都大学微生物科学寄付研究部門主催シンポジウム「微生物科学研究の現状と展望」(ポスター講演)
    • Place of Presentation
      京都大学, 京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 次世代シケンサーで解析する亜熱帯林内生菌の超多様性2011

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・大園享司
    • Organizer
      京都大学微生物科学寄付研究部門主催シンポジウム「微生物科学研究の現状と展望」(ポスター講演)
    • Place of Presentation
      京都大学, 京都
    • Related Report
      2013 Final Research Report
  • [Presentation] 漂白化した落葉上に子実体形成するCoccomyces属菌の系統的多様性と宿主特異性2011

    • Author(s)
      広瀬大・大園享司
    • Organizer
      平成23年度日本菌学会関東支部会年次大会
    • Place of Presentation
      東京農業大学, 東京
    • Related Report
      2013 Final Research Report
  • [Presentation] 次世代シーケンサーで解析する亜熱帯林内生菌の超多様性2011

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・大園享司
    • Organizer
      京都大学微生物科学寄付研究部門主催シンポジウム
    • Place of Presentation
      京都大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] 菌目線で生態系にせまる―熱帯から極地まで2011

    • Author(s)
      大園享司
    • Organizer
      京都大学微生物科学寄付研究部門主催シンポジウム(招待講演)
    • Place of Presentation
      京都大学(京都府)
    • Related Report
      2011 Research-status Report
  • [Presentation] The Biodiversity of fungi2011

    • Author(s)
      Osono T.
    • Organizer
      School of Life Science, Nanjing University, China(招待講演)
    • Place of Presentation
      南京大学(中国)
    • Related Report
      2011 Research-status Report
  • [Presentation] 454 sequencing reveals the hyper-diversity of endophytic fungi associated with tree leaves in a subtropical forest in southern Japan2011

    • Author(s)
      Sakaguchi C, Matsuoka S, Ito K, Hirose D, Yazawa S, Nishimura O, Osono T.
    • Organizer
      XIII International Congress of Mycology
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Related Report
      2011 Research-status Report
  • [Presentation] 次世代シーケンサーで明らかにする亜熱帯林内生菌の超多様性2011

    • Author(s)
      阪口瀬理奈・松岡俊将・伊藤公一・広瀬大・矢澤重信・西村理・大園享司
    • Organizer
      日本菌学会第55回大会
    • Place of Presentation
      北海道大学(北海道)
    • Related Report
      2011 Research-status Report
  • [Book] Species Diversity and Community Structure: Novel Patterns and Processes in Plants, Insects, and Fungi2014

    • Author(s)
      Osono T.
    • Total Pages
      61
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Advances in Endophytic Research2014

    • Author(s)
      Osono T.
    • Total Pages
      454
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] Advances in Endophytic Research2013

    • Author(s)
      Osono, T.
    • Publisher
      Springer
    • Related Report
      2012 Research-status Report
  • [Book] Species Diversity and Community Structure: Novel Patterns and Processes in Plants, Insects, and Fungi2013

    • Author(s)
      Osono, T.
    • Publisher
      Springer
    • Related Report
      2012 Research-status Report
  • [Book] 熱帯林・亜熱帯林の落ち葉は白く腐る.生き物たちのつづれ織り(下)(阿形清和・森哲監修、高林純示ほか編)2012

    • Author(s)
      大園享司
    • Publisher
      京都大学学術出版会
    • Related Report
      2013 Final Research Report
  • [Book] 分解.森のバランス―植物と土壌の相互作用(森林立地学会編)2012

    • Author(s)
      大園享司
    • Publisher
      東海大学出版会
    • Related Report
      2013 Final Research Report
  • [Book] グラスエンドファイト―その生態と進化(原題:Ecology and Evolution of the Grass-Endophyte Symbiosis, Cheplick G.P. & Faeth S.H.)2012

    • Author(s)
      大園享司(訳)
    • Publisher
      東海大学出版会
    • Related Report
      2013 Final Research Report
  • [Book] グラスエンドファイト―その生態と進化2012

    • Author(s)
      大園享司
    • Total Pages
      295
    • Publisher
      東海大学出版会
    • Related Report
      2012 Research-status Report
  • [Book] 菌類の生物学(原題:Fungal Biology, Understanding the fungal lifestyle, second edition, Lysek G. & Jennings D.H.)2011

    • Author(s)
      広瀬大・大園享司(訳)
    • Publisher
      京都大学学術出版会
    • Related Report
      2013 Final Research Report
  • [Book] 鏡味麻衣子生態学からみた微生物の世界.微生物の生態学(大園享司・鏡味麻衣子編)2011

    • Author(s)
      大園享司
    • Publisher
      共立出版
    • Related Report
      2013 Final Research Report
  • [Book] 鏡味麻衣子微生物の生態学2011

    • Author(s)
      大園享司
    • Publisher
      共立出版
    • Related Report
      2013 Final Research Report
  • [Book] 微生物の生態学2011

    • Author(s)
      大園享司・鏡味麻衣子
    • Total Pages
      264
    • Publisher
      共立出版
    • Related Report
      2011 Research-status Report
  • [Book] 菌類の生物学2011

    • Author(s)
      広瀬大・大園享司
    • Total Pages
      207
    • Publisher
      京都大学学術出版会
    • Related Report
      2011 Research-status Report
  • [Remarks] 2011年10月2日 ひらめき☆ときめきサイエンス~ようこそ大学の研究室へ~KAKENHI「みんなちがうのにいっしょにくらしている生態系の不思議:生物の多様性って何だろう?」実施分担者, アウトリーチ活動

    • Related Report
      2013 Final Research Report
  • [Remarks] 2012年11月18日 サイエンスカフェ高槻「みんなの知らない南極のカビ・きのこの話」講師, アウトリーチ活動

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://www.ecology.kyoto-u.ac.jp/~tosono/

    • Related Report
      2013 Final Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi