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Structural studies for the refined reaction mechanism of copper amine oxidase.

Research Project

Project/Area Number 23770127
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionOsaka Medical College

Principal Investigator

TAKESHI Murakawa  大阪医科大学, 医学部, 助教 (90445990)

Project Period (FY) 2011 – 2013
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2012: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsトパキノン / 高分解能X線結晶解析 / 中性子線結晶構造解析 / 超高分解能X腺結晶構造解析 / TPQ / アミン酸化酵素 / 高分解能 / 中性子線 / X線
Research Abstract

Copper amine oxidases (CAOs) catalyse the oxidation of various aliphatic amines to the corresponding aldehydes, ammonia and hydrogen peroxide. I focused on the structural insights into the catalytic mechanism of a CAO from Arthrobacter globiformis (AGAO) using an ultra-high resolution X-ray crystallography and neutron crystallography method. For the ultra-high resolution X-ray crystallography, the crystal structure of AGAO was determined at 1.08 A resolution in the substrate-free form. Based on the structure, the oxygen pathway to the active site was estimated. On the other hand, on the basis of the structure of the AGAO complexed with irreversible inhibitors, structural insights of the substrate specificity were obtained. Furthermore, a large crystal of AGAO for a neutron crystallography was prepared.

Report

(4 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Research-status Report
  • 2011 Research-status Report
  • Research Products

    (14 results)

All 2014 2013 2012 2011

All Journal Article (4 results) (of which Peer Reviewed: 2 results) Presentation (10 results)

  • [Journal Article] High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis : assignment of bound diatomic molecules as O_22013

    • Author(s)
      Murakawa T, Hayashi H, Sunami T, Kurihara K, Tamada T, Kuroki R, Suzuki M, Tanizawa K, Okajima T.
    • Journal Title

      Acta Crystallogr D Biol Crystallogr

      Volume: 69 Pages: 2483-94

    • Related Report
      2013 Final Research Report
  • [Journal Article] High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O22013

    • Author(s)
      Murakawa T, Hayashi H, Sunami T, Kurihara K, Tamada T, Kuroki R, Suzuki M, Tanizawa K, Okajima T.
    • Journal Title

      Acta Crystallographica Section D

      Volume: 69 Issue: 12 Pages: 2483-2494

    • DOI

      10.1107/s0907444913023196

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural insights into the substrate specificity of bacterial copper amine oxidase obtained by using irreversible inhibitors2012

    • Author(s)
      Murakawa T, Hayashi H, Taki M, Yamamoto Y, Kawano Y, Tanizawa K, Okajima T.
    • Journal Title

      J. Biochem.

      Volume: 151 Pages: 167-78

    • NAID

      10031166055

    • Related Report
      2013 Final Research Report
  • [Journal Article] Structural insights into the substrate specificity of bacterial copper amine oxidase obtained by using irreversible inhibitors.2012

    • Author(s)
      Takeshi Murakawa, Hideyuki Hayashi, Masayasu Taki,Yukio Yamamoto, Yoshiaki Kawano, Katsuyuki Tanizawa, Toshihide Okajima.
    • Journal Title

      THE JOURNAL OF BIOCHEMISTRY

      Volume: 15 Pages: 167-178

    • NAID

      10031166055

    • Related Report
      2011 Research-status Report
    • Peer Reviewed
  • [Presentation] 銅アミン酸化酵素のTPQ生成反応と触媒反応における保存性Asn残基の役割2014

    • Author(s)
      村川武志,中西将太,元山暁仁,林秀行,谷澤克行,岡島俊英
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
  • [Presentation] 銅含有アミン酸化酵素の高分解能X線結晶構造解析2012

    • Author(s)
      村川武志,岡島俊英,谷澤克行,林秀行
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-15
    • Related Report
      2013 Final Research Report
  • [Presentation] 銅含有アミン酸化酵素の高分解能X線結晶構造解析2012

    • Author(s)
      村川武志,岡島俊英,谷澤克行,林秀行
    • Organizer
      日本生化学会近畿支部会
    • Place of Presentation
      京都
    • Year and Date
      2012-05-19
    • Related Report
      2013 Final Research Report
  • [Presentation] 銅含有アミン酸化酵素の高分解能X線結晶構造解析2012

    • Author(s)
      村川武志,岡島俊英,谷澤克行,林秀行
    • Organizer
      生化学会近畿支部会
    • Place of Presentation
      京都大学(京都)
    • Related Report
      2012 Research-status Report
  • [Presentation] 銅含有アミン酸化酵素の高分解能X線結晶構造解析2012

    • Author(s)
      村川武志,岡島俊英,谷澤克行,林秀行
    • Organizer
      酵素補酵素研究会
    • Place of Presentation
      名古屋大学(名古屋)
    • Related Report
      2012 Research-status Report
  • [Presentation] 銅含有アミン酸化酵素の高分解能X線結晶構造解析2012

    • Author(s)
      村川武志,岡島俊英,谷澤克行,林秀行
    • Organizer
      日本生化学会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2012 Research-status Report
  • [Presentation] Acid-base chemistry of the reductive half reaction of bacterial copper amine oxidase2011

    • Author(s)
      Takeshi Murakawa, Toshihide Okajima, Akio Hamaguchi, Katsuyuki Tanizawa, and Hideyuki Hayashi
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2011-09-22
    • Related Report
      2013 Final Research Report
  • [Presentation] Acid-base chemistry of the reductive half reaction of bacterial copper amine oxidase2011

    • Author(s)
      Takeshi Murakawa, Toshihide Okajima, Akio Hamaguchi, Katsuyuki Tanizawa, and Hideyuki Hayashi
    • Organizer
      ICC-03
    • Place of Presentation
      トゥルク,フィンランド
    • Year and Date
      2011-07-12
    • Related Report
      2013 Final Research Report
  • [Presentation] Acid-base chemistry of the catalytic reaction of the bacterial copper amine oxidase2011

    • Author(s)
      Takeshi Murakawa, Toshihide Okajima, Akio Hamaguchi, Katsuyuki Tanizawa, Hideyuki Hayashi
    • Organizer
      日本生化学会
    • Place of Presentation
      京都
    • Related Report
      2011 Research-status Report
  • [Presentation] Acid-base chemistry of the catalytic reaction of the bacterial copper amine oxidase2011

    • Author(s)
      Takeshi Murakawa, Toshihide Okajima, Akio Hamaguchi, Katsuyuki Tanizawa, Hideyuki Hayashi
    • Organizer
      The Third International Conference on Cofactors 03
    • Place of Presentation
      フィンランド
    • Related Report
      2011 Research-status Report

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Published: 2011-08-05   Modified: 2019-07-29  

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