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Development of genome-engineering technology and its application to genome evolution in Saccharomyces cerevisiae

Research Project

Project/Area Number 23780080
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionOsaka University

Principal Investigator

SUGIYAMA Minetaka  大阪大学, 大学院・工学研究科, 准教授 (80379130)

Research Collaborator HARASHIMA Satoshi  大阪大学, 大学院・工学研究科, 教授 (70116086)
Project Period (FY) 2011 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2012: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2011: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Keywords部分異数性 / ゲノム / 育種 / 出芽酵母 / 染色体分断 / エボリューション / 循環型社会
Research Abstract

Using PCR-mediated chromosomal duplication and deletion technologies that we developed, we investigated whether segmental duplication or deletion of specific chromosomal regions improved industrially important phenotypes in Saccharomyces cerevisiae. Systematic analysis of segmental duplication and deletion of chromosomes revealed that alteration of copy number of specific chromosomal regions enhanced resistance against a variety of stresses including ethanol, high-temperature and acid stresses. These results indicate that the genome-engineering technologies provide an unique and useful tool not only for analyzing genome function but also for breeding of S. cerevisaie for efficient production of bioethanol or organic acids.

Report

(3 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Research-status Report
  • Research Products

    (23 results)

All 2013 2012 2011 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results) Presentation (14 results) Book (3 results) Remarks (2 results)

  • [Journal Article] 酵母ゲノム工学の最前線2013

    • Author(s)
      杉山峰崇、笹野 佑、原島 俊
    • Journal Title

      細胞工学

      Volume: VOL. 32 Pages: 592-599

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Large-scale genome reorganization in Saccharomyces cerevisiae through combinatorial loss of mini-chromosomes2012

    • Author(s)
      Youji Ueda, Shigehito Ikushima, Minetaka Sugiyama, Ryo Matoba, Yoshinobu Kaneko, Kenichi Matsubara, Satoshi Harashima
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: VOL. 113 Issue: 6 Pages: 675-682

    • DOI

      10.1016/j.jbiosc.2012.01.013

    • NAID

      10031085641

    • Related Report
      2012 Annual Research Report 2012 Final Research Report 2011 Research-status Report
    • Peer Reviewed
  • [Journal Article] Creation of an ethanol-tolerant yeast strain by genome reconstruction based on chromosome splitting technology.2012

    • Author(s)
      A-Hwang Park, Minetaka Sugiyama, Satoshi Harashima, Yeon-Hee Kim
    • Journal Title

      J. Microbiol. Biotechnol.

      Volume: 22(2) Pages: 184-189

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Creation of an ethanol-tolerant yeast strain by genome reconstruction based on chromosome splitting technology2012

    • Author(s)
      A-Hwang Park, Minetaka Sugiyama, Satoshi Harashima, Yeon-Hee Kim
    • Journal Title

      Journal of Microbiology and Biotechnology

      Volume: VOL. 22 Pages: 184-189

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 出芽酵母におけるゲノム網羅的な染色体部分重複と表現型解析2012

    • Author(s)
      杉山峰崇,Waranya Netesuntorn,松原裕樹,林 達也,原島 俊
    • Organizer
      第35回 日本分子生物学年会
    • Place of Presentation
      マリンメッセ福岡(福岡).
    • Year and Date
      2012-12-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Random walks on chromosomal regions reveal hidden lethal relationships among non-essential genes in the genome of Saccharomyces cerevisiae.2012

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第35回 日本分子生物学年会
    • Place of Presentation
      マリンメッセ福岡(福岡).
    • Year and Date
      2012-12-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Revealing hidden lethal relationships among non-essential genes using systematic lethal screen on chromosomal regions in the genome of Saccharomyces cerevisiae.2012

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      Aachen-Osaka Symposium
    • Place of Presentation
      Germany
    • Year and Date
      2012-12-04
    • Related Report
      2012 Final Research Report
  • [Presentation] Exploitation of PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae.2012

    • Author(s)
      Waranya Netesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第64回 日本生物工学大会
    • Place of Presentation
      神戸国際 議場 (兵庫)
    • Year and Date
      2012-10-25
    • Related Report
      2012 Final Research Report
  • [Presentation] Exploitation pf PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae2012

    • Author(s)
      Waranya Netesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第45回 酵母遺伝学フォーラム
    • Place of Presentation
      京都大学宇治キャンパスきはだホール(京都)
    • Year and Date
      2012-09-06
    • Related Report
      2012 Final Research Report
  • [Presentation] 出芽酵母における染色体任意領域重複技術の開発と応用2011

    • Author(s)
      松原裕樹,岩見康太郎,杉山峰崇,金子嘉信,原島 俊
    • Organizer
      第63回 日本生物工学大会
    • Place of Presentation
      東京農工大学(東京)
    • Year and Date
      2011-09-26
    • Related Report
      2012 Final Research Report
  • [Presentation] 出芽酵母における染色体任意領域重複技術の開発と応用2011

    • Author(s)
      松原裕樹,岩見康太郎,杉山峰崇,金子嘉信,原島 俊
    • Organizer
      第44回 酵母遺伝学フォーラム
    • Place of Presentation
      九州大学医学部百年講堂(福岡)
    • Year and Date
      2011-09-05
    • Related Report
      2012 Final Research Report
  • [Presentation] 出芽酵母における染色体任意領域重複技術の開発と応用2011

    • Author(s)
      杉山 峰崇
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      九州大学医学部百年講堂(福岡)
    • Related Report
      2011 Research-status Report
  • [Presentation] 出芽酵母における染色体任意領域重複技術の開発と応用2011

    • Author(s)
      杉山 峰崇
    • Organizer
      日本生物工学会大会
    • Place of Presentation
      東京農工大学(東京)
    • Related Report
      2011 Research-status Report
  • [Presentation] Exploitation pf PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae

    • Author(s)
      Waranya Netesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第45回 酵母遺伝学フォーラム
    • Place of Presentation
      京都大学宇治キャンパスきはだホール(京都)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Exploitation pf PCDup technology for breeding and genome analysis in Saccharomyces cerevisiae

    • Author(s)
      Waranya Netesuntorn, Yuki Matsubara, Tatsuya Hayashi, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第64回 日本生物工学会大会
    • Place of Presentation
      神戸国際会議場 (兵庫)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Revealing hidden lethal relationships among non-essential genes using systematic lethal screen on chromosomal regions in the genome of Saccharomyces cerevisiae

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      Aachen-Osaka Symposium
    • Place of Presentation
      Aachen (Germany)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 出芽酵母におけるゲノム網羅的な染色体部分重複と表現型解析

    • Author(s)
      杉山峰崇、Waranya Netesuntorn、松原裕樹、林 達也、原島 俊
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Random walks on chromosomal regions reveal hidden lethal relationships among non-essential genes in the genome of Saccharomyces cerevisiae

    • Author(s)
      Saeed Kaboli, Takuya Yamakawa, Minetaka Sugiyama, Yoshinobu Kaneko, Satoshi Harashima
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Book] Part 2, chapter 5, Development and application of novel genome engineering technologies in Saccharomyces cerevisiae. SakayuShimizu and Hideharu Anazawa (eds). Microbial production: from genome design to cell engineering.2013

    • Author(s)
      Yu Sasano, Minetaka Sugiyama, Satoshi Harashima
    • Publisher
      Springer(in press)
    • Related Report
      2012 Final Research Report
  • [Book] 酵母ゲノム工学の最前線,細胞工学 Vol.322013

    • Author(s)
      杉山峰崇,笹野 佑,原島 俊
    • Publisher
      秀潤社
    • Related Report
      2012 Final Research Report
  • [Book] Microbial production: from genome design to cell engineering2013

    • Author(s)
      笹野 佑、杉山峰崇、原島 俊
    • Total Pages
      8
    • Publisher
      Springer
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.bio.eng.osaka-u.ac.jp/mg/index.html

    • Related Report
      2012 Final Research Report
  • [Remarks] 研究内容

    • URL

      http://www.bio.eng.osaka-u.ac.jp/mg/research/index.html

    • Related Report
      2012 Annual Research Report

URL: 

Published: 2011-08-05   Modified: 2019-07-29  

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